Wall clock time and date at job start Mon Mar 8 2021 11:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00139 * 2 1 4 4 C 1.53002 * 112.90913 * 71.36919 * 3 2 1 5 5 F 1.39892 * 109.47375 * 284.16658 * 4 3 2 6 6 F 1.39902 * 109.47008 * 44.16549 * 4 3 2 7 7 F 1.39900 * 109.47117 * 164.16268 * 4 3 2 8 8 C 1.53788 * 113.61498 * 300.11897 * 3 2 1 9 9 C 1.53774 * 87.08263 * 270.88520 * 8 3 2 10 10 H 1.09005 * 113.61585 * 89.19681 * 9 8 3 11 11 N 1.46500 * 113.61681 * 220.01702 * 9 8 3 12 12 S 1.65594 * 120.00389 * 214.98513 * 11 9 8 13 13 O 1.42098 * 106.40527 * 177.54587 * 12 11 9 14 14 O 1.42102 * 106.40129 * 310.46299 * 12 11 9 15 15 C 1.76195 * 107.21861 * 64.00249 * 12 11 9 16 16 C 1.38214 * 119.99918 * 64.62631 * 15 12 11 17 17 C 1.50700 * 119.99915 * 0.02562 * 16 15 12 18 18 O 1.42901 * 109.47332 * 284.58865 * 17 16 15 19 19 Si 1.86302 * 109.47074 * 164.58539 * 17 16 15 20 20 C 1.38257 * 120.00029 * 179.97438 * 16 15 12 21 21 C 1.38216 * 120.00048 * 0.02562 * 20 16 15 22 22 C 1.38252 * 119.99957 * 0.02562 * 21 20 16 23 23 C 1.38213 * 119.99942 * 359.70533 * 22 21 20 24 24 C 1.53781 * 87.08269 * 334.56779 * 9 8 3 25 25 H 1.08999 * 109.47308 * 185.98206 * 1 2 3 26 26 H 1.09000 * 109.47278 * 305.98089 * 1 2 3 27 27 H 1.09007 * 109.47541 * 65.97982 * 1 2 3 28 28 H 1.09001 * 113.61075 * 25.43241 * 8 3 2 29 29 H 1.08995 * 113.61305 * 156.25189 * 8 3 2 30 30 H 0.97000 * 119.99220 * 34.98543 * 11 9 8 31 31 H 1.09003 * 109.47152 * 44.58727 * 17 16 15 32 32 H 0.96692 * 113.99994 * 179.97438 * 18 17 16 33 33 H 1.48505 * 109.99794 * 60.00230 * 19 17 16 34 34 H 1.48506 * 109.99959 * 181.31946 * 19 17 16 35 35 H 1.08001 * 120.00027 * 180.02562 * 20 16 15 36 36 H 1.08005 * 119.99624 * 179.97438 * 21 20 16 37 37 H 1.07999 * 120.00034 * 179.97438 * 22 21 20 38 38 H 1.08004 * 119.99981 * 180.29857 * 23 22 21 39 39 H 1.09006 * 113.61504 * 270.88470 * 24 9 8 40 40 H 1.09000 * 113.62207 * 139.98286 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.8412 2.0326 1.3355 5 9 0.5250 2.4919 1.4531 6 9 2.1232 1.1517 2.3851 7 9 2.7208 3.1191 1.3894 8 6 1.6149 2.1558 -1.2188 9 6 2.8352 1.5543 -1.9356 10 1 2.6170 0.6273 -2.4659 11 7 3.5685 2.5206 -2.7570 12 16 4.2708 2.0364 -4.1764 13 8 4.8456 3.1992 -4.7568 14 8 5.0197 0.8669 -3.8750 15 6 2.9724 1.5317 -5.2551 16 6 2.0429 2.4543 -5.6968 17 6 2.1404 3.8921 -5.2562 18 8 1.6945 4.0071 -3.9034 19 14 1.0720 4.9520 -6.3544 20 6 1.0244 2.0584 -6.5438 21 6 0.9353 0.7397 -6.9483 22 6 1.8644 -0.1834 -6.5057 23 6 2.8859 0.2136 -5.6635 24 6 3.4489 1.3391 -0.5421 25 1 -0.3634 -1.0220 0.1071 26 1 -0.3634 0.6038 0.8316 27 1 -0.3634 0.4183 -0.9387 28 1 0.6619 1.8669 -1.6622 29 1 1.6934 3.2291 -1.0463 30 1 3.6427 3.4440 -2.4694 31 1 3.1761 4.2244 -5.3268 32 1 1.7302 4.9074 -3.5527 33 1 -0.3427 4.5091 -6.2671 34 1 1.1841 6.3766 -5.9503 35 1 0.2983 2.7794 -6.8892 36 1 0.1394 0.4304 -7.6096 37 1 1.7946 -1.2138 -6.8215 38 1 3.6145 -0.5066 -5.3215 39 1 4.0303 2.1892 -0.1850 40 1 3.9767 0.3910 -0.4390 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16772214_2726874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:12:36 Heat of formation + Delta-G solvation = -221.091027 kcal Electronic energy + Delta-G solvation = -34010.791964 eV Core-core repulsion = 28892.438242 eV Total energy + Delta-G solvation = -5118.353722 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.078 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.25870 -48.79522 -48.72795 -41.27903 -40.59463 -38.58491 -37.76384 -37.39512 -37.04850 -33.85690 -32.93351 -32.37484 -28.86811 -28.07722 -26.91106 -26.67973 -24.39841 -23.96054 -22.66091 -21.38399 -20.77229 -19.78113 -19.55155 -19.40471 -18.92392 -18.53212 -18.42528 -17.50946 -17.12760 -16.97494 -16.48681 -16.44190 -15.99610 -15.82856 -15.75482 -15.61308 -15.52060 -15.16961 -15.13350 -15.04142 -14.91886 -14.88271 -14.80858 -14.16281 -14.00379 -13.85725 -13.57785 -13.47836 -13.36612 -13.32343 -13.27757 -13.05761 -12.95063 -12.61559 -12.38794 -12.23123 -11.97655 -11.78240 -11.61233 -10.94607 -10.57491 -10.44544 -10.38780 -10.02254 -4.92205 -0.70335 -0.26641 0.16027 1.23355 1.48470 1.58295 1.87004 1.89890 2.09595 2.36590 2.55150 2.60551 2.65018 2.89382 3.18829 3.29754 3.33710 3.42486 3.53093 3.73293 3.80219 3.86042 4.01852 4.18461 4.22006 4.27809 4.28572 4.35942 4.46342 4.49341 4.51004 4.62474 4.67547 4.76088 4.84354 4.86462 5.01587 5.11144 5.20985 5.32356 5.72575 5.77659 6.05794 6.54441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.347 6.347 3 C 0.037 3.963 4 C 0.438 3.562 5 F -0.184 7.184 6 F -0.187 7.187 7 F -0.175 7.175 8 C -0.139 4.139 9 C 0.154 3.846 10 H 0.122 0.878 11 N -1.074 6.074 12 S 2.705 3.295 13 O -0.980 6.980 14 O -0.987 6.987 15 C -0.670 4.670 16 C 0.026 3.974 17 C -0.140 4.140 18 O -0.531 6.531 19 Si 0.763 3.237 20 C -0.149 4.149 21 C -0.055 4.055 22 C -0.137 4.137 23 C -0.037 4.037 24 C -0.136 4.136 25 H 0.111 0.889 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.431 0.569 31 H 0.108 0.892 32 H 0.398 0.602 33 H -0.277 1.277 34 H -0.283 1.283 35 H 0.148 0.852 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.127 0.873 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.992 0.469 -4.441 6.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.265 6.265 3 C -0.007 4.007 4 C 0.383 3.617 5 F -0.165 7.165 6 F -0.168 7.168 7 F -0.156 7.156 8 C -0.178 4.178 9 C 0.046 3.954 10 H 0.140 0.860 11 N -0.835 5.835 12 S 2.797 3.203 13 O -0.971 6.971 14 O -0.976 6.976 15 C -0.759 4.759 16 C 0.024 3.976 17 C -0.249 4.249 18 O -0.341 6.341 19 Si 0.667 3.333 20 C -0.167 4.167 21 C -0.072 4.072 22 C -0.155 4.155 23 C -0.057 4.057 24 C -0.175 4.175 25 H 0.129 0.871 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.269 0.731 31 H 0.126 0.874 32 H 0.249 0.751 33 H -0.204 1.204 34 H -0.210 1.210 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.737 0.060 -4.778 6.728 hybrid contribution -0.790 0.868 1.629 2.007 sum -5.526 0.928 -3.149 6.428 Atomic orbital electron populations 1.23294 0.78685 1.05086 1.02018 1.88089 1.22140 1.22273 1.94000 1.23733 1.01054 0.86896 0.88972 1.21350 0.73716 0.77997 0.88646 1.93171 1.36922 1.89676 1.96742 1.93192 1.93331 1.68942 1.61381 1.93172 1.69123 1.56542 1.96768 1.23954 1.00645 1.01539 0.91648 1.21876 0.91282 0.92216 0.90011 0.85993 1.54991 1.70975 1.20535 1.36984 1.01270 0.73304 0.72661 0.73028 1.93529 1.76427 1.49665 1.77433 1.93568 1.68663 1.51138 1.84276 1.30534 1.21060 1.02704 1.21554 1.18960 0.92477 0.92640 0.93483 1.25515 1.08819 0.98776 0.91794 1.86545 1.88344 1.35365 1.23886 0.93523 0.76767 0.74905 0.88133 1.21513 0.98152 0.97967 0.99047 1.21852 0.97606 0.92225 0.95561 1.21693 0.94470 1.01733 0.97641 1.21252 0.97297 0.93349 0.93774 1.23848 0.92070 1.06344 0.95258 0.87109 0.93251 0.91282 0.87707 0.85686 0.73063 0.87405 0.75059 1.20407 1.20954 0.83453 0.81984 0.82442 0.83594 0.85452 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.50 113.37 1.19 1.18 16 2 O -0.35 -0.44 10.34 -148.98 -1.54 -1.98 16 3 C 0.04 -0.03 0.84 -10.26 -0.01 -0.04 16 4 C 0.44 1.02 2.65 71.98 0.19 1.21 16 5 F -0.18 -0.49 15.26 44.97 0.69 0.20 16 6 F -0.19 -1.22 17.11 44.97 0.77 -0.45 16 7 F -0.17 -0.30 15.81 44.97 0.71 0.41 16 8 C -0.14 0.70 6.68 31.12 0.21 0.91 16 9 C 0.15 -0.49 4.29 45.52 0.20 -0.29 16 10 H 0.12 -0.37 8.05 -2.38 -0.02 -0.39 16 11 N -1.07 3.39 4.04 -167.20 -0.68 2.71 16 12 S 2.71 9.00 5.01 -56.49 -0.28 8.72 16 13 O -0.98 -7.28 15.51 -128.00 -1.99 -9.27 16 14 O -0.99 -9.07 16.75 -128.00 -2.14 -11.21 16 15 C -0.67 -1.02 5.86 22.27 0.13 -0.89 16 16 C 0.03 -0.01 5.28 -19.87 -0.10 -0.11 16 17 C -0.14 0.39 2.02 71.24 0.14 0.53 16 18 O -0.53 3.28 10.57 -148.98 -1.57 1.70 16 19 Si 0.76 -3.30 30.21 68.60 2.07 -1.23 16 20 C -0.15 0.42 8.66 22.27 0.19 0.61 16 21 C -0.05 0.27 10.05 22.27 0.22 0.49 16 22 C -0.14 0.50 10.05 22.27 0.22 0.72 16 23 C -0.04 -0.01 9.55 22.27 0.21 0.21 16 24 C -0.14 0.25 7.13 31.12 0.22 0.47 16 25 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.05 -0.08 6.18 -2.39 -0.01 -0.10 16 27 H 0.07 -0.41 6.65 -2.38 -0.02 -0.42 16 28 H 0.10 -0.63 6.51 -2.39 -0.02 -0.65 16 29 H 0.12 -0.98 8.04 -2.39 -0.02 -1.00 16 30 H 0.43 -3.27 8.47 -96.75 -0.82 -4.09 16 31 H 0.11 -0.17 5.38 -2.39 -0.01 -0.19 16 32 H 0.40 -5.25 8.74 -74.06 -0.65 -5.90 16 33 H -0.28 0.08 6.74 99.48 0.67 0.75 16 34 H -0.28 -0.03 7.11 99.48 0.71 0.67 16 35 H 0.15 -0.84 4.91 -2.91 -0.01 -0.86 16 36 H 0.16 -1.73 8.06 -2.91 -0.02 -1.76 16 37 H 0.16 -1.34 8.06 -2.91 -0.02 -1.36 16 38 H 0.15 -0.09 7.34 -2.91 -0.02 -0.11 16 39 H 0.13 -0.51 7.02 -2.38 -0.02 -0.52 16 40 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -20.73 347.69 -1.27 -22.00 By element: Atomic # 1 Polarization: -16.27 SS G_CDS: -0.33 Total: -16.60 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 3.02 Total: 5.01 kcal Atomic # 7 Polarization: 3.39 SS G_CDS: -0.68 Total: 2.71 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -7.24 Total: -20.76 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 2.17 Total: 0.15 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.07 Total: -1.23 kcal Atomic # 16 Polarization: 9.00 SS G_CDS: -0.28 Total: 8.72 kcal Total: -20.73 -1.27 -22.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16772214_2726874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.088 kcal (2) G-P(sol) polarization free energy of solvation -20.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds