Wall clock time and date at job start Mon Mar 8 2021 11:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 H 1.48503 * 109.47244 * 299.99766 * 3 2 1 5 5 H 1.48503 * 109.47274 * 59.99882 * 3 2 1 6 6 H 1.48506 * 109.47357 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 8 8 C 1.38242 * 120.00078 * 245.27527 * 7 2 1 9 9 C 1.38226 * 119.99966 * 179.97438 * 8 7 2 10 10 C 1.38241 * 120.00340 * 359.97438 * 9 8 7 11 11 S 1.76192 * 120.00165 * 179.97438 * 10 9 8 12 12 O 1.42096 * 106.40189 * 203.53503 * 11 10 9 13 13 O 1.42104 * 106.40375 * 336.45454 * 11 10 9 14 14 N 1.65602 * 107.22080 * 89.99232 * 11 10 9 15 15 C 1.46497 * 119.99548 * 65.00363 * 14 11 10 16 16 C 1.50704 * 109.47130 * 165.00054 * 15 14 11 17 17 C 1.38241 * 119.99772 * 270.27280 * 16 15 14 18 18 C 1.38238 * 119.99794 * 179.97438 * 17 16 15 19 19 C 1.38235 * 119.99990 * 359.97202 * 18 17 16 20 Xx 1.81001 * 119.99711 * 179.97438 * 19 18 17 21 20 F 9.91606 * 106.01946 * 161.82533 * 11 1 2 22 21 F 1.61002 * 89.99580 * 135.00456 * 20 19 18 23 22 F 1.60999 * 90.00143 * 315.00263 * 20 19 18 24 23 F 1.61000 * 90.00173 * 225.00217 * 20 19 18 25 24 F 1.61000 * 89.99969 * 45.00543 * 20 19 18 26 25 C 1.38229 * 120.00004 * 359.96160 * 19 18 17 27 26 C 1.38232 * 119.99994 * 89.99311 * 16 15 14 28 27 C 1.38232 * 119.99738 * 359.94616 * 10 9 8 29 28 C 1.38237 * 119.99948 * 64.99974 * 7 2 1 30 29 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 31 30 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 32 31 H 1.08001 * 119.99484 * 359.97438 * 8 7 2 33 32 H 1.08007 * 119.99930 * 179.97438 * 9 8 7 34 33 H 0.97000 * 120.00146 * 244.99650 * 14 11 10 35 34 H 1.09002 * 109.46762 * 284.99451 * 15 14 11 36 35 H 1.09001 * 109.47664 * 45.00147 * 15 14 11 37 36 H 1.07997 * 119.99840 * 359.97352 * 17 16 15 38 37 H 1.07998 * 119.99521 * 179.97438 * 18 17 16 39 38 H 1.08008 * 119.99826 * 180.02562 * 26 19 18 40 39 H 1.07993 * 120.00370 * 0.21072 * 27 16 15 41 40 H 1.07998 * 120.00081 * 180.02562 * 28 10 9 42 41 H 1.07995 * 120.00341 * 0.20894 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5550 2.4565 -1.2125 5 1 1.5549 2.4565 1.2125 6 1 3.5350 1.7565 0.0006 7 6 1.9313 -0.7104 1.2305 8 6 2.6338 -0.0110 2.1940 9 6 3.0941 -0.6624 3.3229 10 6 2.8515 -2.0132 3.4887 11 16 3.4388 -2.8437 4.9274 12 8 3.5447 -4.2181 4.5822 13 8 4.5324 -2.0782 5.4144 14 7 2.2482 -2.7399 6.0738 15 6 0.9606 -3.4035 5.8547 16 6 0.2053 -3.4768 7.1567 17 6 0.3694 -4.5672 7.9905 18 6 -0.3231 -4.6342 9.1850 19 6 -1.1791 -3.6106 9.5461 20 9 -2.8955 -3.7810 12.4989 21 9 -1.7133 -2.1621 11.4127 22 9 -2.4593 -5.2353 10.8069 23 9 -3.4286 -3.2246 10.3579 24 9 -0.7439 -4.1727 11.8618 25 6 -1.3421 -2.5197 8.7130 26 6 -0.6472 -2.4510 7.5199 27 6 2.1476 -2.7122 2.5260 28 6 1.6847 -2.0601 1.3984 29 1 -0.3933 0.4417 -0.7650 30 1 1.7924 -0.5139 -0.8900 31 1 2.8230 1.0445 2.0647 32 1 3.6433 -0.1161 4.0755 33 1 2.4034 -2.2398 6.8903 34 1 0.3785 -2.8362 5.1284 35 1 1.1310 -4.4114 5.4763 36 1 1.0385 -5.3666 7.7086 37 1 -0.1952 -5.4862 9.8362 38 1 -2.0106 -1.7197 8.9953 39 1 -0.7745 -1.5987 6.8691 40 1 1.9577 -3.7675 2.6557 41 1 1.1350 -2.6063 0.6463 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16806390_13421422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:04:55 Heat of formation + Delta-G solvation = 318.868555 kcal Electronic energy + Delta-G solvation = -34904.359837 eV Core-core repulsion = 29047.312881 eV Total energy + Delta-G solvation = -5857.046956 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 401.068 amu Computer time = 27.40 seconds Orbital eigenvalues (eV) -44.36619 -44.25449 -44.13981 -44.07583 -43.56851 -41.23551 -40.55964 -38.38674 -37.62462 -36.98220 -36.63956 -33.09766 -32.86559 -32.30958 -32.14169 -27.16795 -26.78164 -24.44637 -24.05961 -22.78201 -22.69020 -20.65468 -19.23468 -18.77181 -18.49454 -17.92750 -17.26218 -17.12815 -16.85707 -16.58549 -16.26879 -16.04135 -15.65224 -15.39086 -15.27663 -15.25140 -15.11070 -14.80577 -14.71798 -14.64611 -14.55603 -14.50647 -14.24524 -14.17817 -14.14980 -14.10667 -13.98364 -13.86333 -13.82206 -13.64124 -13.59412 -13.55400 -13.23773 -13.15996 -12.82912 -12.81174 -12.70905 -12.34878 -12.26245 -12.17096 -11.87918 -11.82373 -11.74268 -11.45368 -10.75698 -10.74875 -10.62678 -10.49547 -10.21115 -10.07278 -5.25024 -4.80127 -3.07818 -0.94510 -0.57792 -0.40340 -0.32115 0.25042 1.12188 1.43549 1.48201 1.74252 1.88624 2.10721 2.38580 2.71913 2.76422 3.03806 3.09281 3.30117 3.34577 3.39508 3.61246 3.74618 3.82545 3.93747 4.18384 4.22045 4.23731 4.32002 4.35297 4.46093 4.48977 4.57119 4.64277 4.67085 4.77783 4.90374 4.98500 5.00074 5.04685 5.05801 5.33613 5.76335 6.00440 6.76470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.086 4.086 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.030 4.030 8 C -0.160 4.160 9 C -0.021 4.021 10 C -0.679 4.679 11 S 2.719 3.281 12 O -0.974 6.974 13 O -0.987 6.987 14 N -1.105 6.105 15 C 0.145 3.855 16 C -0.072 4.072 17 C -0.026 4.026 18 C -0.119 4.119 19 C 0.331 3.669 20 F -0.215 7.215 21 F -0.163 7.163 22 F -0.162 7.162 23 F -0.160 7.160 24 F -0.167 7.167 25 C -0.118 4.118 26 C -0.022 4.022 27 C -0.022 4.022 28 C -0.117 4.117 29 H 0.401 0.599 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.432 0.568 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.211 0.789 37 H 0.184 0.816 38 H 0.186 0.814 39 H 0.218 0.782 40 H 0.166 0.834 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.718 2.367 -15.364 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.030 4.030 8 C -0.179 4.179 9 C -0.040 4.040 10 C -0.766 4.766 11 S 2.809 3.191 12 O -0.963 6.963 13 O -0.977 6.977 14 N -0.869 5.869 15 C 0.020 3.980 16 C -0.074 4.074 17 C -0.043 4.043 18 C -0.136 4.136 19 C 0.327 3.673 20 F -0.215 7.215 21 F -0.162 7.162 22 F -0.161 7.161 23 F -0.158 7.158 24 F -0.165 7.165 25 C -0.135 4.135 26 C -0.039 4.039 27 C -0.041 4.041 28 C -0.136 4.136 29 H 0.252 0.748 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.171 0.829 33 H 0.270 0.730 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.228 0.772 37 H 0.202 0.798 38 H 0.203 0.797 39 H 0.234 0.766 40 H 0.183 0.817 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.918 2.394 -14.945 15.634 hybrid contribution -1.476 0.599 1.136 1.956 sum 2.442 2.993 -13.809 14.339 Atomic orbital electron populations 1.86430 1.16570 1.82235 1.51312 1.24767 0.86258 1.10306 0.98323 0.85420 0.79589 0.75388 0.80415 1.18133 1.18870 1.18698 1.19929 0.93995 0.94915 0.94165 1.21349 1.00874 1.00643 0.95003 1.21034 0.93397 0.92494 0.97121 1.30882 1.17410 1.06358 1.21996 1.01007 0.72267 0.72964 0.72838 1.93588 1.85559 1.32912 1.84268 1.93595 1.50988 1.72928 1.80178 1.55358 1.28684 1.68072 1.34776 1.20635 0.82502 1.01749 0.93067 1.20521 0.96167 0.93590 0.97124 1.21860 0.95904 1.00313 0.86251 1.22154 0.93494 0.99722 0.98264 1.28008 0.89080 1.00727 0.49507 2.00000 1.59873 1.83209 1.78447 1.99921 1.57766 1.62558 1.95970 1.99919 1.82692 1.64682 1.68816 1.99920 1.60620 1.96639 1.58661 1.99921 1.29635 1.95402 1.91591 1.22185 1.02821 0.97673 0.90807 1.21860 0.91405 1.00687 0.89976 1.21294 0.90648 1.00671 0.91483 1.21403 0.99654 0.93743 0.98791 0.74771 0.87885 0.84848 0.82936 0.72983 0.86209 0.86084 0.77205 0.79844 0.79667 0.76575 0.81689 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 439. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 4.19 12.81 -148.98 -1.91 2.28 16 2 C -0.09 0.67 2.79 71.24 0.20 0.87 16 3 Si 0.97 -5.92 25.15 68.60 1.72 -4.19 16 4 H -0.26 1.41 7.11 99.48 0.71 2.12 16 5 H -0.26 0.86 7.03 99.48 0.70 1.56 16 6 H -0.26 0.98 7.11 99.48 0.71 1.69 16 7 C -0.03 0.14 5.38 -19.86 -0.11 0.04 16 8 C -0.16 0.66 8.67 22.27 0.19 0.85 16 9 C -0.02 0.11 9.52 22.27 0.21 0.32 16 10 C -0.68 4.61 5.95 22.27 0.13 4.75 16 11 S 2.72 -18.80 5.74 -56.49 -0.32 -19.12 16 12 O -0.97 1.93 16.75 -128.00 -2.14 -0.22 16 13 O -0.99 -1.14 17.28 -128.00 -2.21 -3.35 16 14 N -1.11 17.88 5.99 -190.79 -1.14 16.74 16 15 C 0.14 -3.01 6.35 85.63 0.54 -2.47 16 16 C -0.07 1.44 5.28 -19.86 -0.10 1.33 16 17 C -0.03 0.46 9.70 22.27 0.22 0.68 16 18 C -0.12 1.17 8.62 22.27 0.19 1.37 16 19 C 0.33 -1.01 4.82 22.27 0.11 -0.90 16 20 F -0.22 -5.59 16.66 44.97 0.75 -4.84 16 21 F -0.16 -2.38 15.32 44.97 0.69 -1.69 16 22 F -0.16 -2.39 15.30 44.97 0.69 -1.70 16 23 F -0.16 -2.29 15.31 44.97 0.69 -1.60 16 24 F -0.17 -2.51 15.32 44.97 0.69 -1.82 16 25 C -0.12 1.27 8.62 22.27 0.19 1.47 16 26 C -0.02 0.43 9.70 22.27 0.22 0.64 16 27 C -0.02 0.18 9.52 22.27 0.21 0.39 16 28 C -0.12 0.79 9.69 22.27 0.22 1.01 16 29 H 0.40 -6.24 8.74 -74.06 -0.65 -6.88 16 30 H 0.10 -1.20 7.96 -2.39 -0.02 -1.22 16 31 H 0.13 -0.76 4.87 -2.91 -0.01 -0.77 16 32 H 0.15 -1.14 7.62 -2.91 -0.02 -1.16 16 33 H 0.43 -8.07 8.64 -96.74 -0.84 -8.91 16 34 H 0.12 -3.01 8.09 -2.39 -0.02 -3.03 16 35 H 0.12 -2.71 7.70 -2.39 -0.02 -2.73 16 36 H 0.21 -4.96 8.06 -2.91 -0.02 -4.98 16 37 H 0.18 -1.66 7.40 -2.91 -0.02 -1.68 16 38 H 0.19 -1.92 7.40 -2.91 -0.02 -1.94 16 39 H 0.22 -5.78 8.06 -2.91 -0.02 -5.81 16 40 H 0.17 -2.11 7.62 -2.91 -0.02 -2.13 16 41 H 0.15 -1.49 8.06 -2.91 -0.02 -1.52 16 Total: 0.00 -46.89 387.68 0.32 -46.57 By element: Atomic # 1 Polarization: -37.79 SS G_CDS: 0.40 Total: -37.39 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 2.42 Total: 10.34 kcal Atomic # 7 Polarization: 17.88 SS G_CDS: -1.14 Total: 16.74 kcal Atomic # 8 Polarization: 4.97 SS G_CDS: -6.27 Total: -1.29 kcal Atomic # 9 Polarization: -15.16 SS G_CDS: 3.50 Total: -11.65 kcal Atomic # 14 Polarization: -5.92 SS G_CDS: 1.72 Total: -4.19 kcal Atomic # 16 Polarization: -18.80 SS G_CDS: -0.32 Total: -19.12 kcal Total: -46.89 0.32 -46.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16806390_13421422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 365.442 kcal (2) G-P(sol) polarization free energy of solvation -46.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 318.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 318.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.41 seconds