Wall clock time and date at job start Mon Mar 8 2021 10:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99862 * 2 1 4 4 C 1.52998 * 109.47185 * 180.02562 * 3 2 1 5 5 O 1.42895 * 109.47467 * 65.00183 * 4 3 2 6 6 C 1.35995 * 117.00064 * 180.02562 * 5 4 3 7 7 C 1.38522 * 120.07525 * 0.02562 * 6 5 4 8 8 C 1.38283 * 119.99965 * 179.97438 * 7 6 5 9 9 C 1.38205 * 120.14926 * 359.97438 * 8 7 6 10 10 C 1.50696 * 119.93251 * 179.97438 * 9 8 7 11 11 O 1.42894 * 109.47259 * 119.99637 * 10 9 8 12 12 Si 1.86308 * 109.46765 * 0.02562 * 10 9 8 13 13 H 1.48504 * 109.47063 * 299.99927 * 12 10 9 14 14 H 1.48493 * 109.47019 * 59.99614 * 12 10 9 15 15 H 1.48494 * 109.47008 * 179.97438 * 12 10 9 16 16 C 1.38291 * 120.14649 * 0.02562 * 9 8 7 17 17 C 1.38527 * 119.99574 * 359.97438 * 16 9 8 18 18 O 1.35994 * 120.07075 * 180.27982 * 17 16 9 19 19 S 1.52203 * 113.99971 * 269.72443 * 18 17 16 20 20 O 1.42098 * 104.27525 * 191.07274 * 19 18 17 21 21 O 1.42098 * 104.27465 * 318.92613 * 19 18 17 22 22 C 1.81391 * 104.45011 * 74.99880 * 19 18 17 23 23 C 1.53005 * 109.47187 * 180.02562 * 22 19 18 24 24 C 1.53002 * 109.47130 * 180.02562 * 23 22 19 25 25 Si 1.86302 * 109.46870 * 179.97438 * 24 23 22 26 26 C 1.86300 * 109.47136 * 59.99548 * 25 24 23 27 27 C 1.86302 * 109.47030 * 179.97438 * 25 24 23 28 28 C 1.86293 * 109.46945 * 299.99477 * 25 24 23 29 29 H 1.09007 * 109.47072 * 299.99196 * 1 2 3 30 30 H 1.08997 * 109.47783 * 59.99465 * 1 2 3 31 31 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47271 * 60.00566 * 3 2 1 33 33 H 1.09003 * 109.46965 * 300.00513 * 3 2 1 34 34 H 1.08999 * 109.47035 * 304.99845 * 4 3 2 35 35 H 1.09005 * 109.46912 * 185.00033 * 4 3 2 36 36 H 1.07996 * 119.99916 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.92659 * 180.02562 * 8 7 6 38 38 H 1.08997 * 109.47728 * 240.00432 * 10 9 8 39 39 H 0.96705 * 114.00069 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00254 * 180.02562 * 16 9 8 41 41 H 1.09006 * 109.47354 * 300.00162 * 22 19 18 42 42 H 1.09002 * 109.47455 * 60.00159 * 22 19 18 43 43 H 1.09009 * 109.46865 * 299.99587 * 23 22 19 44 44 H 1.08994 * 109.47411 * 59.99709 * 23 22 19 45 45 H 1.08999 * 109.46429 * 299.99286 * 24 23 22 46 46 H 1.08994 * 109.47551 * 59.99378 * 24 23 22 47 47 H 1.08997 * 109.47154 * 60.00048 * 26 25 24 48 48 H 1.09006 * 109.47084 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.47066 * 299.99681 * 26 25 24 50 50 H 1.08994 * 109.47104 * 59.99722 * 27 25 24 51 51 H 1.08997 * 109.47357 * 179.97438 * 27 25 24 52 52 H 1.08997 * 109.47188 * 299.99909 * 27 25 24 53 53 H 1.09001 * 109.47442 * 60.00206 * 28 25 24 54 54 H 1.09009 * 109.47136 * 180.02562 * 28 25 24 55 55 H 1.09003 * 109.47584 * 299.99946 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2219 6 6 5.3028 0.3979 -1.3837 7 6 6.1823 0.7924 -0.3889 8 6 7.5425 0.6062 -0.5548 9 6 8.0277 0.0264 -1.7117 10 6 9.5109 -0.1737 -1.8876 11 8 9.7873 -1.5656 -2.0553 12 14 10.4059 0.4593 -0.3812 13 1 10.1187 1.9058 -0.2062 14 1 9.9446 -0.2854 0.8179 15 1 11.8674 0.2616 -0.5542 16 6 7.1552 -0.3698 -2.7088 17 6 5.7914 -0.1861 -2.5489 18 8 4.9316 -0.5803 -3.5260 19 16 4.6343 0.4961 -4.5602 20 8 3.5440 -0.0266 -5.3066 21 8 4.4958 1.6867 -3.7970 22 6 6.1305 0.5664 -5.5833 23 6 5.9539 1.6257 -6.6732 24 6 7.2157 1.6845 -7.5365 25 14 7.0003 2.9738 -8.8640 26 6 6.7101 4.6359 -8.0741 27 6 8.5370 3.0459 -9.9148 28 6 5.5387 2.5292 -9.9300 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6884 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9784 2.1766 0.0889 36 1 5.8058 1.2454 0.5163 37 1 8.2271 0.9138 0.2218 38 1 9.8494 0.3726 -2.7680 39 1 10.7252 -1.7688 -2.1746 40 1 7.5368 -0.8230 -3.6117 41 1 6.9856 0.8266 -4.9593 42 1 6.3007 -0.4060 -6.0455 43 1 5.0989 1.3657 -7.2973 44 1 5.7840 2.5979 -6.2108 45 1 8.0709 1.9442 -6.9126 46 1 7.3852 0.7121 -7.9989 47 1 7.5653 4.8960 -7.4504 48 1 6.5845 5.3903 -8.8508 49 1 5.8112 4.5939 -7.4591 50 1 8.7071 2.0736 -10.3769 51 1 8.4108 3.7999 -10.6917 52 1 9.3919 3.3062 -9.2908 53 1 4.6397 2.4872 -9.3150 54 1 5.4128 3.2833 -10.7071 55 1 5.7084 1.5567 -10.3922 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16901880_14927650.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:00:33 Heat of formation + Delta-G solvation = -237.360960 kcal Electronic energy + Delta-G solvation = -36140.869070 eV Core-core repulsion = 31395.177466 eV Total energy + Delta-G solvation = -4745.691604 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 406.158 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.50395 -40.40589 -39.40339 -38.57354 -38.38026 -37.28478 -37.13086 -35.85002 -32.54207 -31.96155 -31.06067 -29.59871 -28.38166 -28.29916 -28.22303 -27.41951 -26.47354 -25.19215 -24.18472 -22.81921 -22.50926 -21.26884 -19.76729 -19.29509 -18.81141 -18.55416 -18.31857 -17.90698 -17.51053 -16.88619 -16.72142 -16.35059 -16.22036 -16.14692 -15.96345 -15.76470 -15.47770 -14.82541 -14.71166 -14.57020 -14.27959 -14.12164 -14.02156 -13.98157 -13.91785 -13.74862 -13.56765 -13.52691 -13.50274 -13.36463 -13.31438 -13.22645 -13.13754 -13.03860 -13.00020 -12.96675 -12.82063 -12.47771 -12.40662 -12.34517 -11.98602 -11.86264 -11.82070 -11.79943 -11.70240 -10.76771 -10.69792 -10.67258 -10.43429 -10.32191 -10.23219 -9.39363 -1.08830 -0.12363 0.01335 0.97703 1.21763 1.51716 1.58176 1.89708 1.93117 1.97721 2.01976 2.04025 2.21286 2.54941 2.70446 2.75210 2.89625 3.35162 3.44063 3.50801 3.64271 3.68840 3.77195 3.86643 3.97419 3.99924 4.10102 4.18339 4.22902 4.26040 4.37639 4.42183 4.44131 4.46945 4.47792 4.60936 4.63194 4.73992 4.76283 4.78961 4.80749 4.82157 4.84788 4.87310 4.89027 4.89483 4.89862 4.91677 5.10986 5.13295 5.40080 5.47442 5.61278 5.67285 5.68736 6.04505 6.15058 6.87467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.418 6.418 3 C 0.053 3.947 4 C 0.046 3.954 5 O -0.321 6.321 6 C 0.143 3.857 7 C -0.189 4.189 8 C -0.063 4.063 9 C -0.105 4.105 10 C -0.078 4.078 11 O -0.563 6.563 12 Si 0.968 3.032 13 H -0.247 1.247 14 H -0.268 1.268 15 H -0.254 1.254 16 C -0.062 4.062 17 C 0.001 3.999 18 O -0.663 6.663 19 S 2.569 3.431 20 O -0.978 6.978 21 O -0.970 6.970 22 C -0.625 4.625 23 C -0.119 4.119 24 C -0.409 4.409 25 Si 1.068 2.932 26 C -0.472 4.472 27 C -0.460 4.460 28 C -0.477 4.477 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.174 0.826 37 H 0.155 0.845 38 H 0.112 0.888 39 H 0.401 0.599 40 H 0.174 0.826 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.064 0.936 52 H 0.073 0.927 53 H 0.064 0.936 54 H 0.065 0.935 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.221 3.757 2.266 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.338 6.338 3 C -0.023 4.023 4 C -0.028 4.028 5 O -0.234 6.234 6 C 0.094 3.906 7 C -0.208 4.208 8 C -0.082 4.082 9 C -0.105 4.105 10 C -0.188 4.188 11 O -0.372 6.372 12 Si 0.791 3.209 13 H -0.171 1.171 14 H -0.193 1.193 15 H -0.178 1.178 16 C -0.082 4.082 17 C -0.041 4.041 18 O -0.622 6.622 19 S 2.671 3.329 20 O -0.976 6.976 21 O -0.968 6.968 22 C -0.756 4.756 23 C -0.158 4.158 24 C -0.495 4.495 25 Si 1.260 2.740 26 C -0.578 4.578 27 C -0.567 4.567 28 C -0.582 4.582 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.191 0.809 37 H 0.173 0.827 38 H 0.129 0.871 39 H 0.252 0.748 40 H 0.192 0.808 41 H 0.181 0.819 42 H 0.181 0.819 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.083 0.917 52 H 0.092 0.908 53 H 0.083 0.917 54 H 0.085 0.915 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.117 3.737 3.187 8.647 hybrid contribution -0.074 -0.152 -0.778 0.796 sum 7.043 3.585 2.409 8.262 Atomic orbital electron populations 1.22928 0.79380 1.03781 1.01061 1.87907 1.21600 1.28575 1.95679 1.22817 0.91245 0.85363 1.02901 1.23376 0.94539 0.99994 0.84899 1.86211 1.19278 1.76300 1.41569 1.19407 0.84179 0.93441 0.93530 1.21451 0.93193 1.05983 1.00147 1.21330 0.95256 0.95170 0.96427 1.19359 0.95427 1.01630 0.94112 1.24732 0.94223 0.87874 1.11990 1.86471 1.32851 1.21760 1.96145 0.85436 0.78889 0.79899 0.76626 1.17117 1.19283 1.17849 1.21273 0.88085 0.96573 1.02286 1.17740 0.88062 1.09955 0.88354 1.85714 1.67183 1.62707 1.46635 1.06141 0.78338 0.73044 0.75394 1.93568 1.52329 1.78803 1.72916 1.93582 1.86813 1.49677 1.66776 1.30796 1.19940 1.11473 1.13411 1.21215 1.01523 0.97236 0.95800 1.26235 0.98851 1.13987 1.10431 0.78313 0.65276 0.65175 0.65210 1.26404 1.04972 1.18750 1.07646 1.26236 1.16179 1.04461 1.09844 1.26481 1.15768 1.05525 1.10472 0.91908 0.93840 0.89072 0.87437 0.92733 0.89168 0.87023 0.80894 0.82747 0.87055 0.74808 0.80846 0.81898 0.81885 0.90146 0.89422 0.88308 0.88892 0.90707 0.91552 0.91593 0.91112 0.91652 0.90791 0.91711 0.91529 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 11.01 113.37 1.25 1.32 16 2 O -0.42 -3.77 10.67 -144.35 -1.54 -5.31 16 3 C 0.05 0.16 6.32 71.98 0.45 0.62 16 4 C 0.05 0.11 5.12 71.98 0.37 0.48 16 5 O -0.32 -3.74 9.32 -68.75 -0.64 -4.38 16 6 C 0.14 1.22 5.94 22.57 0.13 1.36 16 7 C -0.19 -0.21 9.04 22.35 0.20 -0.01 16 8 C -0.06 0.08 8.66 22.27 0.19 0.27 16 9 C -0.10 0.10 5.42 -19.86 -0.11 -0.01 16 10 C -0.08 0.51 2.81 71.23 0.20 0.71 16 11 O -0.56 2.77 12.74 -148.98 -1.90 0.87 16 12 Si 0.97 -6.07 25.06 68.60 1.72 -4.35 16 13 H -0.25 1.51 7.11 99.48 0.71 2.22 16 14 H -0.27 0.64 7.11 99.48 0.71 1.35 16 15 H -0.25 1.50 7.11 99.48 0.71 2.21 16 16 C -0.06 -0.09 8.03 22.35 0.18 0.09 16 17 C 0.00 0.01 4.80 22.57 0.11 0.12 16 18 O -0.66 -7.71 9.84 -60.50 -0.60 -8.31 16 19 S 2.57 25.60 5.17 -56.49 -0.29 25.31 16 20 O -0.98 -17.69 18.09 -118.57 -2.15 -19.84 16 21 O -0.97 -13.12 15.80 -117.10 -1.85 -14.97 16 22 C -0.63 1.19 5.47 71.98 0.39 1.58 16 23 C -0.12 0.26 4.59 30.60 0.14 0.40 16 24 C -0.41 2.72 4.45 71.98 0.32 3.04 16 25 Si 1.07 -6.78 12.19 68.60 0.84 -5.94 16 26 C -0.47 1.51 8.65 113.37 0.98 2.50 16 27 C -0.46 2.19 8.65 113.37 0.98 3.17 16 28 C -0.48 0.93 8.65 113.37 0.98 1.91 16 29 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 30 H 0.04 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.11 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.09 -0.08 7.66 -2.39 -0.02 -0.10 16 35 H 0.11 -0.42 7.67 -2.38 -0.02 -0.43 16 36 H 0.17 -0.93 6.30 -2.91 -0.02 -0.94 16 37 H 0.16 -0.93 4.87 -2.91 -0.01 -0.94 16 38 H 0.11 -1.38 7.96 -2.39 -0.02 -1.40 16 39 H 0.40 -5.50 8.74 -74.05 -0.65 -6.15 16 40 H 0.17 -0.78 7.51 -2.91 -0.02 -0.80 16 41 H 0.16 -1.21 6.62 -2.39 -0.02 -1.23 16 42 H 0.16 -1.05 8.14 -2.39 -0.02 -1.06 16 43 H 0.08 -0.16 7.79 -2.38 -0.02 -0.17 16 44 H 0.09 -0.30 7.79 -2.39 -0.02 -0.31 16 45 H 0.10 -0.94 7.96 -2.39 -0.02 -0.96 16 46 H 0.09 -0.76 7.96 -2.39 -0.02 -0.78 16 47 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 48 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 49 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 50 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 51 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 52 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 53 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 54 H 0.07 -0.10 7.96 -2.38 -0.02 -0.11 16 55 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 Total: 0.00 -32.40 456.85 1.36 -31.04 By element: Atomic # 1 Polarization: -12.65 SS G_CDS: 0.99 Total: -11.66 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 6.78 Total: 17.54 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -8.67 Total: -51.93 kcal Atomic # 14 Polarization: -12.85 SS G_CDS: 2.56 Total: -10.30 kcal Atomic # 16 Polarization: 25.60 SS G_CDS: -0.29 Total: 25.31 kcal Total: -32.40 1.36 -31.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16901880_14927650.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.319 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds