Wall clock time and date at job start Mon Mar 8 2021 11:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00152 * 2 1 4 4 C 1.52999 * 109.47005 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47404 * 64.99852 * 4 3 2 6 6 C 1.35994 * 117.00258 * 180.02562 * 5 4 3 7 7 C 1.39146 * 120.07512 * 180.02562 * 6 5 4 8 8 O 1.35998 * 120.07325 * 359.97438 * 7 6 5 9 9 S 1.52201 * 114.00018 * 90.00025 * 8 7 6 10 10 O 1.42102 * 104.27605 * 318.92963 * 9 8 7 11 11 O 1.42102 * 104.27559 * 191.07232 * 9 8 7 12 12 C 1.81400 * 104.44786 * 75.00307 * 9 8 7 13 13 C 1.52998 * 109.46928 * 179.97438 * 12 9 8 14 14 H 1.09003 * 112.84968 * 45.33203 * 13 12 9 15 15 C 1.53785 * 113.61370 * 176.52621 * 13 12 9 16 16 C 1.53780 * 87.08096 * 89.19841 * 15 13 12 17 17 O 1.42897 * 113.61749 * 270.88441 * 16 15 13 18 18 C 1.42894 * 113.99963 * 294.70333 * 17 16 15 19 19 C 1.53002 * 113.61522 * 140.06273 * 16 15 13 20 20 F 1.39897 * 109.46941 * 54.78075 * 19 16 15 21 21 F 1.39901 * 109.47181 * 174.78519 * 19 16 15 22 22 F 1.39907 * 109.47076 * 294.78205 * 19 16 15 23 23 C 1.53783 * 113.61495 * 274.13263 * 13 12 9 24 24 C 1.38568 * 119.85276 * 180.24877 * 7 6 5 25 25 C 1.38238 * 119.99815 * 359.46976 * 24 7 6 26 26 C 1.50706 * 119.92390 * 180.25139 * 25 24 7 27 27 O 1.42900 * 109.47337 * 300.25588 * 26 25 24 28 28 Si 1.86296 * 109.47056 * 180.25320 * 26 25 24 29 29 C 1.38248 * 120.14921 * 0.50974 * 25 24 7 30 30 C 1.38242 * 120.14346 * 359.76285 * 29 25 24 31 31 H 1.08997 * 109.47507 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47186 * 300.00362 * 1 2 3 33 33 H 1.08997 * 109.47202 * 60.00030 * 1 2 3 34 34 H 1.08996 * 109.47515 * 60.00059 * 3 2 1 35 35 H 1.08996 * 109.47114 * 299.99557 * 3 2 1 36 36 H 1.09004 * 109.46927 * 304.99692 * 4 3 2 37 37 H 1.08998 * 109.47471 * 185.00156 * 4 3 2 38 38 H 1.08997 * 109.47383 * 59.99628 * 12 9 8 39 39 H 1.09004 * 109.47145 * 299.99924 * 12 9 8 40 40 H 1.08999 * 113.61297 * 203.74560 * 15 13 12 41 41 H 1.08996 * 113.61513 * 334.56688 * 15 13 12 42 42 H 1.09000 * 109.47258 * 296.83471 * 18 17 16 43 43 H 1.09001 * 109.47387 * 56.83483 * 18 17 16 44 44 H 1.08998 * 109.47248 * 176.83375 * 18 17 16 45 45 H 1.08997 * 113.61189 * 25.35174 * 23 13 12 46 46 H 1.08994 * 113.61137 * 156.25286 * 23 13 12 47 47 H 1.08001 * 119.99720 * 179.72037 * 24 7 6 48 48 H 1.09004 * 109.46704 * 60.25891 * 26 25 24 49 49 H 0.96703 * 113.99797 * 299.99748 * 27 26 25 50 50 H 1.48501 * 110.00172 * 58.68115 * 28 26 25 51 51 H 1.48499 * 110.00047 * 180.02562 * 28 26 25 52 52 H 1.07998 * 119.92739 * 179.75001 * 29 25 24 53 53 H 1.08002 * 119.99575 * 179.97438 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3028 0.3974 -1.3838 7 6 5.7913 -0.1855 -2.5490 8 8 4.9318 -0.5749 -3.5283 9 16 4.6400 0.5043 -4.5611 10 8 4.5043 1.6940 -3.7959 11 8 3.5491 -0.0133 -5.3103 12 6 6.1383 0.5712 -5.5816 13 6 5.9666 1.6321 -6.6705 14 1 5.5482 2.5644 -6.2910 15 6 7.2184 1.8285 -7.5420 16 6 6.6585 0.7259 -8.4563 17 8 7.0661 -0.5911 -8.0805 18 6 8.4700 -0.8242 -8.2099 19 6 6.8570 1.0065 -9.9472 20 9 8.2127 1.2404 -10.2012 21 9 6.4268 -0.0976 -10.6909 22 9 6.1129 2.1335 -10.3127 23 6 5.2622 1.1099 -7.9338 24 6 7.1551 -0.3735 -2.7069 25 6 8.0278 0.0277 -1.7127 26 6 9.5111 -0.1724 -1.8886 27 8 9.7873 -1.5643 -2.0569 28 14 10.4060 0.4606 -0.3823 29 6 7.5425 0.6073 -0.5552 30 6 6.1827 0.7926 -0.3889 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 1.6887 1.8463 -0.8900 36 1 3.8514 0.5681 0.8410 37 1 3.9786 2.1763 0.0889 38 1 6.3059 -0.4009 -6.0451 39 1 6.9931 0.8274 -4.9556 40 1 7.2691 2.8072 -8.0191 41 1 8.1466 1.5529 -7.0415 42 1 8.7582 -0.7344 -9.2573 43 1 9.0164 -0.0895 -7.6185 44 1 8.7064 -1.8265 -7.8527 45 1 4.6133 0.2538 -7.7495 46 1 4.7772 1.8919 -8.5181 47 1 7.5365 -0.8299 -3.6084 48 1 9.8496 0.3743 -2.7687 49 1 9.5120 -2.1131 -1.3098 50 1 9.9304 -0.2546 0.8291 51 1 11.8698 0.2696 -0.5435 52 1 8.2272 0.9158 0.2210 53 1 5.8061 1.2453 0.5165 There are 82 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 82 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16901880_17541816.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:52:55 Heat of formation + Delta-G solvation = -338.532962 kcal Electronic energy + Delta-G solvation = -47624.837277 eV Core-core repulsion = 41144.157369 eV Total energy + Delta-G solvation = -6480.679908 eV No. of doubly occupied orbitals = 82 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 457.129 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -51.26894 -48.79946 -48.74207 -42.49794 -41.46377 -40.38943 -39.48871 -38.58643 -38.37587 -37.38556 -37.27412 -37.12881 -32.46303 -32.11668 -31.60449 -30.97524 -28.39365 -27.88358 -27.39958 -26.81541 -26.50716 -25.15865 -24.19294 -23.61414 -22.56045 -21.57863 -20.71169 -20.00521 -19.70890 -19.57286 -19.28328 -19.20543 -18.67716 -18.65403 -18.02610 -17.85148 -17.33472 -17.22699 -16.76370 -16.52172 -16.47198 -16.36555 -16.12780 -16.07717 -15.91295 -15.80309 -15.68605 -15.61098 -15.44691 -15.34454 -15.16507 -14.92684 -14.92125 -14.83975 -14.67045 -14.35762 -14.28232 -14.15178 -14.10016 -13.54645 -13.44101 -13.42972 -13.28597 -13.26608 -13.17975 -13.11149 -12.97817 -12.86576 -12.44535 -12.36856 -12.33066 -12.23070 -12.20355 -12.10781 -11.90488 -11.66823 -11.43189 -10.83482 -10.74270 -10.65157 -10.22695 -9.40042 -4.86017 -1.10699 -0.08953 0.04070 0.98206 1.35533 1.50675 1.66702 1.93604 2.05077 2.06395 2.27079 2.47669 2.53873 2.60135 2.73471 2.82199 2.88724 3.12250 3.27600 3.29264 3.38545 3.49105 3.51155 3.54091 3.64307 3.86788 3.93436 3.98996 4.03433 4.05541 4.19572 4.26570 4.28311 4.29783 4.33360 4.41878 4.43217 4.45636 4.47417 4.50343 4.54341 4.58552 4.65405 4.66208 4.73635 4.79064 4.80942 4.82169 4.82598 4.91452 4.97655 5.14203 5.44576 5.70432 6.07497 6.18745 6.52205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.418 6.418 3 C 0.051 3.949 4 C 0.047 3.953 5 O -0.323 6.323 6 C 0.146 3.854 7 C -0.003 4.003 8 O -0.664 6.664 9 S 2.584 3.416 10 O -0.963 6.963 11 O -0.971 6.971 12 C -0.623 4.623 13 C -0.095 4.095 14 H 0.126 0.874 15 C -0.123 4.123 16 C 0.037 3.963 17 O -0.347 6.347 18 C 0.001 3.999 19 C 0.433 3.567 20 F -0.181 7.181 21 F -0.189 7.189 22 F -0.176 7.176 23 C -0.142 4.142 24 C -0.065 4.065 25 C -0.138 4.138 26 C -0.076 4.076 27 O -0.546 6.546 28 Si 0.765 3.235 29 C -0.046 4.046 30 C -0.189 4.189 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.135 0.865 47 H 0.167 0.833 48 H 0.141 0.859 49 H 0.387 0.613 50 H -0.279 1.279 51 H -0.305 1.305 52 H 0.170 0.830 53 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 6.335 7.408 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.338 6.338 3 C -0.025 4.025 4 C -0.027 4.027 5 O -0.236 6.236 6 C 0.097 3.903 7 C -0.045 4.045 8 O -0.623 6.623 9 S 2.684 3.316 10 O -0.962 6.962 11 O -0.969 6.969 12 C -0.752 4.752 13 C -0.114 4.114 14 H 0.144 0.856 15 C -0.162 4.162 16 C -0.006 4.006 17 O -0.265 6.265 18 C -0.094 4.094 19 C 0.378 3.622 20 F -0.162 7.162 21 F -0.170 7.170 22 F -0.157 7.157 23 C -0.179 4.179 24 C -0.085 4.085 25 C -0.139 4.139 26 C -0.184 4.184 27 O -0.355 6.355 28 Si 0.670 3.330 29 C -0.064 4.064 30 C -0.207 4.207 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.178 0.822 39 H 0.192 0.808 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.131 0.869 45 H 0.111 0.889 46 H 0.153 0.847 47 H 0.184 0.816 48 H 0.159 0.841 49 H 0.237 0.763 50 H -0.205 1.205 51 H -0.234 1.234 52 H 0.187 0.813 53 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.480 5.920 7.641 11.112 hybrid contribution -0.249 -1.380 -1.144 1.810 sum 5.231 4.540 6.497 9.497 Atomic orbital electron populations 1.22919 0.79458 1.03716 1.01059 1.87902 1.21517 1.28682 1.95682 1.22840 0.91469 0.85307 1.02903 1.23385 0.94350 1.00167 0.84819 1.86215 1.19465 1.76245 1.41643 1.19456 0.84203 0.93186 0.93461 1.17776 0.88040 1.10354 0.88360 1.85735 1.67240 1.62778 1.46533 1.05727 0.77633 0.73113 0.75132 1.93595 1.86479 1.49625 1.66462 1.93579 1.51683 1.78871 1.72809 1.30690 1.21766 1.10231 1.12557 1.21813 0.99246 0.97976 0.92403 0.85609 1.23644 0.99076 0.98403 0.95029 1.24126 1.02075 0.88279 0.86087 1.88052 1.26372 1.26812 1.85270 1.23340 0.79632 1.04556 1.01872 1.21472 0.73903 0.74184 0.92604 1.93185 1.33125 1.94369 1.95565 1.93190 1.89719 1.54171 1.79952 1.93175 1.76811 1.52634 1.93092 1.23687 0.93323 1.03687 0.97185 1.21229 0.88151 0.97035 1.02079 1.20184 0.96637 1.02564 0.94498 1.25225 0.92808 0.85889 1.14525 1.86589 1.84512 1.17395 1.46974 0.94228 0.75752 0.89745 0.73286 1.21377 0.94870 0.93678 0.96482 1.21534 0.93382 1.05787 1.00013 0.89182 0.91927 0.93844 0.87482 0.92744 0.89091 0.86679 0.82210 0.80774 0.85351 0.86232 0.93749 0.90372 0.86903 0.88893 0.84669 0.81573 0.84142 0.76305 1.20488 1.23376 0.81341 0.80720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 11.01 113.37 1.25 1.29 16 2 O -0.42 -3.01 10.67 -144.34 -1.54 -4.55 16 3 C 0.05 0.05 6.32 71.98 0.45 0.50 16 4 C 0.05 -0.03 5.12 71.98 0.37 0.34 16 5 O -0.32 -2.74 9.33 -68.83 -0.64 -3.38 16 6 C 0.15 0.66 5.93 22.57 0.13 0.80 16 7 C 0.00 -0.01 4.80 22.57 0.11 0.09 16 8 O -0.66 -6.16 9.84 -60.55 -0.60 -6.75 16 9 S 2.58 19.73 5.16 -56.49 -0.29 19.44 16 10 O -0.96 -9.88 15.82 -117.13 -1.85 -11.73 16 11 O -0.97 -15.47 17.90 -118.57 -2.12 -17.59 16 12 C -0.62 1.82 5.07 71.98 0.37 2.18 16 13 C -0.09 0.36 3.83 -10.27 -0.04 0.32 16 14 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 15 C -0.12 0.82 6.51 31.12 0.20 1.03 16 16 C 0.04 -0.02 0.85 -10.21 -0.01 -0.02 16 17 O -0.35 -0.24 8.33 -148.98 -1.24 -1.49 16 18 C 0.00 0.00 10.33 113.37 1.17 1.17 16 19 C 0.43 1.25 2.51 71.98 0.18 1.44 16 20 F -0.18 -0.43 15.38 44.97 0.69 0.26 16 21 F -0.19 -1.43 17.09 44.97 0.77 -0.66 16 22 F -0.18 -0.50 15.84 44.97 0.71 0.21 16 23 C -0.14 0.00 6.91 31.18 0.22 0.22 16 24 C -0.07 0.15 8.02 22.35 0.18 0.33 16 25 C -0.14 0.82 5.39 -19.86 -0.11 0.71 16 26 C -0.08 0.60 2.82 71.24 0.20 0.80 16 27 O -0.55 2.12 12.76 -148.98 -1.90 0.22 16 28 Si 0.76 -6.34 29.78 68.60 2.04 -4.30 16 29 C -0.05 0.34 8.66 22.27 0.19 0.53 16 30 C -0.19 0.74 9.04 22.35 0.20 0.94 16 31 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.04 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.05 0.14 8.14 -2.39 -0.02 0.13 16 36 H 0.09 -0.37 7.66 -2.38 -0.02 -0.38 16 37 H 0.12 -0.82 7.66 -2.39 -0.02 -0.84 16 38 H 0.16 -0.52 6.09 -2.39 -0.01 -0.54 16 39 H 0.17 -1.73 6.63 -2.39 -0.02 -1.74 16 40 H 0.13 -1.19 8.06 -2.39 -0.02 -1.21 16 41 H 0.12 -1.28 6.65 -2.39 -0.02 -1.30 16 42 H 0.04 -0.08 6.60 -2.39 -0.02 -0.10 16 43 H 0.08 -0.67 6.60 -2.39 -0.02 -0.68 16 44 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 45 H 0.09 0.32 7.91 -2.39 -0.02 0.30 16 46 H 0.14 -0.38 7.02 -2.39 -0.02 -0.40 16 47 H 0.17 -1.08 7.52 -2.91 -0.02 -1.11 16 48 H 0.14 -1.61 7.96 -2.38 -0.02 -1.63 16 49 H 0.39 -3.27 8.70 -74.06 -0.64 -3.92 16 50 H -0.28 1.28 7.11 99.48 0.71 1.99 16 51 H -0.31 -0.19 7.11 99.48 0.71 0.52 16 52 H 0.17 -2.25 4.87 -2.91 -0.01 -2.26 16 53 H 0.18 -1.78 6.30 -2.91 -0.02 -1.80 16 Total: 0.00 -34.50 448.47 -0.51 -35.01 By element: Atomic # 1 Polarization: -17.73 SS G_CDS: 0.39 Total: -17.34 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.07 Total: 12.66 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -9.90 Total: -45.29 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 2.17 Total: -0.18 kcal Atomic # 14 Polarization: -6.34 SS G_CDS: 2.04 Total: -4.30 kcal Atomic # 16 Polarization: 19.73 SS G_CDS: -0.29 Total: 19.44 kcal Total: -34.50 -0.51 -35.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16901880_17541816.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -303.522 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -338.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -338.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds