Wall clock time and date at job start Mon Mar 8 2021 12:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00022 * 2 1 4 4 C 1.53002 * 109.47145 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.46973 * 65.00193 * 4 3 2 6 6 C 1.35990 * 116.99813 * 180.02562 * 5 4 3 7 7 C 1.39156 * 120.07318 * 179.97438 * 6 5 4 8 8 O 1.35999 * 120.07130 * 359.97438 * 7 6 5 9 9 S 1.52204 * 113.99905 * 269.72966 * 8 7 6 10 10 O 1.42105 * 104.27651 * 318.92508 * 9 8 7 11 11 O 1.42095 * 104.27306 * 191.07355 * 9 8 7 12 12 C 1.81397 * 104.45287 * 74.99795 * 9 8 7 13 13 H 1.09005 * 112.90451 * 53.74400 * 12 9 8 14 14 C 1.53775 * 113.61224 * 184.99936 * 12 9 8 15 15 C 1.53782 * 87.08074 * 89.11764 * 14 12 9 16 16 H 1.08999 * 113.61594 * 270.79485 * 15 14 12 17 17 C 1.50706 * 113.61290 * 139.97692 * 15 14 12 18 18 C 1.38233 * 120.00109 * 299.72461 * 17 15 14 19 19 C 1.38238 * 119.99749 * 179.78525 * 18 17 15 20 20 C 1.38234 * 120.00078 * 0.44989 * 19 18 17 21 21 C 1.38238 * 120.00032 * 359.80374 * 20 19 18 22 22 C 1.38235 * 120.00123 * 359.97438 * 21 20 19 23 23 C 1.53776 * 87.08086 * 25.43231 * 15 14 12 24 24 C 1.38566 * 119.85455 * 179.72991 * 7 6 5 25 25 C 1.38244 * 119.99844 * 0.26834 * 24 7 6 26 26 C 1.50704 * 119.92414 * 180.02562 * 25 24 7 27 27 O 1.42906 * 109.46835 * 300.00330 * 26 25 24 28 28 Si 1.86299 * 109.46816 * 180.02562 * 26 25 24 29 29 C 1.38247 * 120.14790 * 0.02562 * 25 24 7 30 30 C 1.38249 * 120.14786 * 0.02562 * 29 25 24 31 31 H 1.08999 * 109.46787 * 300.00023 * 1 2 3 32 32 H 1.08997 * 109.47057 * 60.00143 * 1 2 3 33 33 H 1.08999 * 109.46952 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47692 * 59.99798 * 3 2 1 35 35 H 1.09003 * 109.47167 * 299.99669 * 3 2 1 36 36 H 1.08995 * 109.47304 * 304.99744 * 4 3 2 37 37 H 1.09001 * 109.47046 * 184.99516 * 4 3 2 38 38 H 1.08999 * 113.61967 * 334.56641 * 14 12 9 39 39 H 1.09005 * 113.61453 * 203.66206 * 14 12 9 40 40 H 1.08004 * 119.99934 * 0.02562 * 18 17 15 41 41 H 1.07999 * 119.99925 * 180.27297 * 19 18 17 42 42 H 1.08002 * 120.00276 * 179.83134 * 20 19 18 43 43 H 1.08000 * 120.00524 * 180.02562 * 21 20 19 44 44 H 1.07999 * 120.00181 * 179.97438 * 22 21 20 45 45 H 1.08996 * 113.61717 * 89.11760 * 23 15 14 46 46 H 1.09006 * 113.61383 * 220.01884 * 23 15 14 47 47 H 1.08001 * 119.99698 * 180.25285 * 24 7 6 48 48 H 1.08998 * 109.46909 * 60.00223 * 26 25 24 49 49 H 0.96704 * 113.99657 * 180.02562 * 27 26 25 50 50 H 1.48497 * 109.99998 * 298.67622 * 28 26 25 51 51 H 1.48493 * 110.00228 * 60.00073 * 28 26 25 52 52 H 1.08000 * 119.92769 * 179.97438 * 29 25 24 53 53 H 1.07990 * 119.99929 * 179.97438 * 30 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5791 -1.2202 6 6 5.3039 0.3971 -1.3809 7 6 5.7933 -0.1872 -2.5451 8 8 4.9345 -0.5779 -3.5246 9 16 4.4489 -2.0137 -3.3857 10 8 5.6063 -2.7385 -2.9923 11 8 3.7992 -2.2848 -4.6199 12 6 3.2438 -1.9550 -2.0312 13 1 2.4644 -1.2094 -2.1888 14 6 2.7022 -3.3367 -1.6283 15 6 3.8819 -3.4255 -0.6458 16 1 4.7801 -3.8641 -1.0805 17 6 3.5165 -4.0360 0.6827 18 6 2.5531 -3.4408 1.4753 19 6 2.2148 -4.0033 2.6919 20 6 2.8465 -5.1560 3.1200 21 6 3.8137 -5.7483 2.3296 22 6 4.1488 -5.1884 1.1110 23 6 3.8876 -1.8878 -0.6363 24 6 7.1580 -0.3654 -2.7065 25 6 8.0295 0.0319 -1.7097 26 6 9.5134 -0.1622 -1.8872 27 8 9.7947 -1.5527 -2.0592 28 14 10.4070 0.4698 -0.3796 29 6 7.5429 0.6068 -0.5504 30 6 6.1825 0.7865 -0.3826 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 3.8508 0.5685 0.8427 37 1 3.9785 2.1765 0.0901 38 1 2.7455 -4.0736 -2.4303 39 1 1.7287 -3.2986 -1.1393 40 1 2.0619 -2.5383 1.1424 41 1 1.4589 -3.5407 3.3092 42 1 2.5841 -5.5940 4.0717 43 1 4.3070 -6.6491 2.6638 44 1 4.9047 -5.6509 0.4938 45 1 3.2382 -1.4534 0.1238 46 1 4.8879 -1.4548 -0.6374 47 1 7.5406 -0.8149 -3.6109 48 1 9.8492 0.3879 -2.7662 49 1 10.7333 -1.7522 -2.1790 50 1 10.1483 1.9218 -0.2073 51 1 9.9579 -0.2727 0.8255 52 1 8.2270 0.9155 0.2262 53 1 5.8049 1.2355 0.5241 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16901880_17781816.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:02:13 Heat of formation + Delta-G solvation = -109.188776 kcal Electronic energy + Delta-G solvation = -42379.718060 eV Core-core repulsion = 37278.660438 eV Total energy + Delta-G solvation = -5101.057622 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.142 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.79479 -41.17933 -40.46078 -39.47012 -38.92997 -38.50128 -38.35846 -37.41361 -37.18038 -32.64275 -32.21248 -32.04568 -31.76928 -31.06730 -27.45565 -27.07171 -26.92031 -26.49841 -25.29335 -24.26344 -23.69491 -22.93774 -22.49575 -21.51933 -20.96569 -19.91248 -19.21251 -18.84488 -18.47666 -18.26690 -18.18790 -17.90848 -17.37173 -17.03970 -16.69578 -16.51753 -16.29009 -16.09746 -16.07695 -15.85564 -15.70523 -15.45531 -15.21372 -14.99230 -14.67554 -14.46336 -14.32068 -14.25185 -14.19747 -13.98568 -13.81620 -13.77969 -13.62193 -13.41725 -13.39858 -13.29957 -13.19746 -13.15003 -12.81136 -12.53428 -12.43560 -12.35011 -12.29566 -11.99160 -11.96181 -11.85862 -11.75592 -11.44023 -11.27702 -10.64085 -10.39309 -10.30258 -9.82258 -9.59555 -9.48011 -4.89381 -1.18375 -0.23752 -0.10623 0.40712 0.49711 0.85742 1.31382 1.68773 1.73073 1.96344 2.10146 2.36298 2.62551 2.74212 2.81647 3.10652 3.23328 3.26969 3.34229 3.43846 3.59730 3.65670 3.71946 3.79411 3.91104 3.98981 4.01365 4.06474 4.14769 4.16740 4.19358 4.29935 4.31752 4.38849 4.44929 4.47021 4.47439 4.51765 4.52783 4.57746 4.61958 4.62725 4.64406 4.67816 4.69301 4.75920 4.79733 4.82601 4.92793 5.04544 5.09412 5.17134 5.20669 5.27116 5.57961 5.63588 5.73041 5.94976 6.11541 6.16777 6.92113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.057 3.943 4 C 0.039 3.961 5 O -0.306 6.306 6 C 0.146 3.854 7 C 0.006 3.994 8 O -0.659 6.659 9 S 2.597 3.403 10 O -0.967 6.967 11 O -0.974 6.974 12 C -0.614 4.614 13 H 0.169 0.831 14 C -0.085 4.085 15 C -0.101 4.101 16 H 0.100 0.900 17 C -0.076 4.076 18 C -0.118 4.118 19 C -0.123 4.123 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.134 4.134 23 C -0.073 4.073 24 C -0.040 4.040 25 C -0.112 4.112 26 C -0.091 4.091 27 O -0.566 6.566 28 Si 0.779 3.221 29 C -0.067 4.067 30 C -0.184 4.184 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.121 0.879 45 H 0.134 0.866 46 H 0.067 0.933 47 H 0.140 0.860 48 H 0.095 0.905 49 H 0.403 0.597 50 H -0.272 1.272 51 H -0.287 1.287 52 H 0.147 0.853 53 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 6.205 8.631 10.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.019 4.019 4 C -0.035 4.035 5 O -0.219 6.219 6 C 0.097 3.903 7 C -0.037 4.037 8 O -0.618 6.618 9 S 2.696 3.304 10 O -0.965 6.965 11 O -0.972 6.972 12 C -0.725 4.725 13 H 0.187 0.813 14 C -0.123 4.123 15 C -0.120 4.120 16 H 0.119 0.881 17 C -0.076 4.076 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.111 4.111 24 C -0.060 4.060 25 C -0.113 4.113 26 C -0.199 4.199 27 O -0.376 6.376 28 Si 0.682 3.318 29 C -0.085 4.085 30 C -0.203 4.203 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.139 0.861 45 H 0.152 0.848 46 H 0.085 0.915 47 H 0.158 0.842 48 H 0.112 0.888 49 H 0.255 0.745 50 H -0.198 1.198 51 H -0.214 1.214 52 H 0.164 0.836 53 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.662 6.189 8.585 10.603 hybrid contribution -1.163 0.080 -0.600 1.311 sum -0.502 6.269 7.985 10.164 Atomic orbital electron populations 1.22868 0.79824 1.03605 1.00704 1.87852 1.20780 1.27638 1.95624 1.22715 0.90317 0.85864 1.02998 1.23487 0.94988 1.00045 0.84945 1.86288 1.17364 1.76383 1.41868 1.18871 0.84945 0.94281 0.92178 1.17595 0.88058 1.11202 0.86798 1.85683 1.65013 1.55151 1.55950 1.05292 0.76146 0.72879 0.76066 1.93615 1.46472 1.71741 1.84672 1.93570 1.78272 1.82452 1.42903 1.32045 1.17060 1.09298 1.14078 0.81329 1.22728 1.00430 0.90427 0.98710 1.21984 0.99197 0.96862 0.93936 0.88148 1.19617 0.97137 0.95547 0.95252 1.21243 0.97312 1.00526 0.94471 1.21426 1.00082 0.96115 0.96504 1.21467 0.96657 0.96441 1.00481 1.21388 0.98190 1.00531 0.94532 1.21303 1.00398 0.96342 0.97130 1.22977 1.00569 0.94731 0.92795 1.21073 0.89744 0.94870 1.00348 1.19529 0.95683 1.01885 0.94207 1.25048 0.93881 0.87867 1.13091 1.86510 1.32964 1.21918 1.96210 0.93876 0.88398 0.76432 0.73092 1.21173 0.95951 0.95676 0.95738 1.21444 0.92445 1.05965 1.00407 0.92818 0.93940 0.89053 0.88279 0.92064 0.89025 0.87211 0.90589 0.85683 0.84208 0.84236 0.84600 0.84949 0.86077 0.84842 0.91486 0.84169 0.88762 0.74547 1.19804 1.21394 0.83629 0.79853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.18 11.01 113.37 1.25 1.07 16 2 O -0.40 1.91 9.02 -144.34 -1.30 0.61 16 3 C 0.06 -0.46 6.32 71.98 0.45 -0.01 16 4 C 0.04 -0.30 4.31 71.98 0.31 0.01 16 5 O -0.31 0.03 6.40 -73.39 -0.47 -0.43 16 6 C 0.15 0.45 3.83 22.57 0.09 0.54 16 7 C 0.01 0.05 4.33 22.57 0.10 0.15 16 8 O -0.66 -8.24 9.84 -60.56 -0.60 -8.83 16 9 S 2.60 33.06 5.07 -56.49 -0.29 32.77 16 10 O -0.97 -15.37 14.53 -118.57 -1.72 -17.09 16 11 O -0.97 -19.24 18.09 -118.57 -2.15 -21.39 16 12 C -0.61 -2.78 3.39 31.12 0.11 -2.68 16 13 H 0.17 0.32 7.80 -2.38 -0.02 0.31 16 14 C -0.08 -0.25 7.15 31.12 0.22 -0.03 16 15 C -0.10 -0.49 3.59 -11.01 -0.04 -0.53 16 16 H 0.10 0.82 6.84 -2.39 -0.02 0.80 16 17 C -0.08 -0.33 5.29 -19.86 -0.11 -0.43 16 18 C -0.12 -0.16 8.62 22.27 0.19 0.03 16 19 C -0.12 -0.07 10.05 22.27 0.22 0.16 16 20 C -0.13 -0.21 10.05 22.27 0.22 0.02 16 21 C -0.13 -0.42 10.05 22.27 0.22 -0.20 16 22 C -0.13 -0.71 9.71 22.27 0.22 -0.49 16 23 C -0.07 -0.19 4.32 31.12 0.13 -0.05 16 24 C -0.04 -0.37 8.60 22.35 0.19 -0.18 16 25 C -0.11 -0.55 5.42 -19.86 -0.11 -0.66 16 26 C -0.09 0.03 2.81 71.24 0.20 0.23 16 27 O -0.57 -1.05 12.74 -148.98 -1.90 -2.95 16 28 Si 0.78 -3.59 29.78 68.60 2.04 -1.55 16 29 C -0.07 -0.09 8.66 22.27 0.19 0.11 16 30 C -0.18 0.23 8.89 22.35 0.20 0.43 16 31 H 0.05 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.04 -0.28 8.14 -2.39 -0.02 -0.30 16 33 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.10 -1.24 8.14 -2.39 -0.02 -1.26 16 35 H 0.06 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H 0.09 -0.90 7.22 -2.39 -0.02 -0.92 16 37 H 0.11 -1.36 7.68 -2.39 -0.02 -1.38 16 38 H 0.08 0.24 8.10 -2.39 -0.02 0.22 16 39 H 0.12 -0.08 7.73 -2.38 -0.02 -0.10 16 40 H 0.14 -0.24 6.64 -2.91 -0.02 -0.26 16 41 H 0.14 -0.53 8.06 -2.91 -0.02 -0.56 16 42 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 43 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 44 H 0.12 0.54 8.05 -2.91 -0.02 0.52 16 45 H 0.13 -0.13 3.57 -2.39 -0.01 -0.14 16 46 H 0.07 0.27 4.56 -2.38 -0.01 0.26 16 47 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 48 H 0.09 -0.40 7.96 -2.39 -0.02 -0.41 16 49 H 0.40 -3.66 8.74 -74.05 -0.65 -4.30 16 50 H -0.27 0.42 7.11 99.48 0.71 1.13 16 51 H -0.29 -0.54 7.11 99.48 0.71 0.17 16 52 H 0.15 -0.30 4.87 -2.91 -0.01 -0.31 16 53 H 0.18 -1.70 6.30 -2.92 -0.02 -1.72 16 Total: 0.00 -28.52 425.10 -1.75 -30.28 By element: Atomic # 1 Polarization: -9.24 SS G_CDS: 0.35 Total: -8.89 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.27 Total: -2.52 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -8.13 Total: -50.09 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.04 Total: -1.55 kcal Atomic # 16 Polarization: 33.06 SS G_CDS: -0.29 Total: 32.77 kcal Total: -28.52 -1.75 -30.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16901880_17781816.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.913 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds