Wall clock time and date at job start Mon Mar 8 2021 10:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86307 * 111.70098 * 2 1 4 4 C 1.90119 * 111.99375 * 233.50074 * 2 1 3 5 5 C 1.55210 * 98.88653 * 271.16901 * 4 2 1 6 6 N 1.45024 * 115.98063 * 339.71602 * 5 4 2 7 7 S 1.65603 * 120.86040 * 179.15502 * 6 5 4 8 8 O 1.42100 * 106.40093 * 203.56230 * 7 6 5 9 9 O 1.42094 * 106.39881 * 336.48675 * 7 6 5 10 10 C 1.76201 * 107.21480 * 90.02862 * 7 6 5 11 11 C 1.38239 * 119.99534 * 269.72188 * 10 7 6 12 12 C 1.38238 * 119.99735 * 179.78836 * 11 10 7 13 13 C 1.38239 * 119.99896 * 0.46623 * 12 11 10 14 14 C 1.50702 * 119.99911 * 179.78939 * 13 12 11 15 15 O 1.42902 * 109.46741 * 244.98087 * 14 13 12 16 16 Si 1.86296 * 109.47025 * 4.97572 * 14 13 12 17 17 H 1.48509 * 109.47027 * 60.00704 * 16 14 13 18 18 H 1.48504 * 109.47141 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47616 * 300.00056 * 16 14 13 20 20 C 1.38231 * 120.00023 * 359.76607 * 13 12 11 21 21 C 1.38234 * 120.00225 * 90.00031 * 10 7 6 22 22 C 1.48279 * 118.27649 * 359.17759 * 6 5 4 23 23 H 1.09002 * 109.47089 * 293.50497 * 1 2 3 24 24 H 1.09001 * 109.47273 * 53.50348 * 1 2 3 25 25 H 1.08998 * 109.47278 * 173.50336 * 1 2 3 26 26 H 1.09001 * 109.47329 * 186.49937 * 3 2 1 27 27 H 1.09008 * 109.46925 * 306.49678 * 3 2 1 28 28 H 1.08998 * 109.47056 * 66.49104 * 3 2 1 29 29 H 1.09003 * 111.51844 * 153.74089 * 4 2 1 30 30 H 1.09004 * 111.49026 * 28.58592 * 4 2 1 31 31 H 1.09002 * 108.15421 * 218.08057 * 5 4 2 32 32 H 1.08999 * 108.15288 * 101.34778 * 5 4 2 33 33 H 1.07999 * 120.00201 * 0.02562 * 11 10 7 34 34 H 1.08001 * 120.00013 * 180.25529 * 12 11 10 35 35 H 1.08998 * 109.47131 * 124.98080 * 14 13 12 36 36 H 0.96695 * 114.00492 * 59.99943 * 15 14 13 37 37 H 1.08002 * 120.00318 * 179.97438 * 20 13 12 38 38 H 1.07997 * 119.99651 * 359.97438 * 21 10 7 39 39 H 1.09000 * 111.29667 * 139.18370 * 22 6 5 40 40 H 1.08997 * 111.30726 * 263.80268 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5519 1.7310 0.0000 4 6 2.5750 -1.0486 -1.4171 5 6 2.6358 -2.4202 -0.6933 6 7 2.6236 -2.3748 0.7562 7 16 2.6633 -3.7682 1.6501 8 8 2.0982 -3.4500 2.9145 9 8 2.1595 -4.7979 0.8105 10 6 4.3578 -4.1507 1.9447 11 6 5.0504 -4.9512 1.0555 12 6 6.3810 -5.2477 1.2843 13 6 7.0165 -4.7517 2.4073 14 6 8.4658 -5.0789 2.6592 15 8 8.5768 -5.8679 3.8454 16 14 9.1474 -6.0340 1.2121 17 1 9.0321 -5.2140 -0.0207 18 1 10.5758 -6.3559 1.4600 19 1 8.3779 -7.2928 1.0432 20 6 6.3227 -3.9553 3.2990 21 6 4.9932 -3.6552 3.0680 22 6 2.5742 -1.0483 1.4170 23 1 -0.3633 0.4099 0.9424 24 1 -0.3634 0.6112 -0.8261 25 1 -0.3634 -1.0210 -0.1163 26 1 3.6349 1.6911 -0.1163 27 1 2.1183 2.2946 -0.8262 28 1 2.3054 2.2202 0.9423 29 1 3.5680 -0.7058 -1.7082 30 1 1.8987 -1.0771 -2.2715 31 1 3.5453 -2.9310 -1.0094 32 1 1.7837 -3.0154 -1.0215 33 1 4.5529 -5.3417 0.1801 34 1 6.9232 -5.8696 0.5874 35 1 9.0307 -4.1550 2.7832 36 1 8.0976 -6.7069 3.8061 37 1 6.8190 -3.5681 4.1766 38 1 4.4509 -3.0332 3.7647 39 1 1.9040 -1.0589 2.2766 40 1 3.5708 -0.7089 1.6991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16914276_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:48:25 Heat of formation + Delta-G solvation = -108.939383 kcal Electronic energy + Delta-G solvation = -22590.797777 eV Core-core repulsion = 19235.219951 eV Total energy + Delta-G solvation = -3355.577826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.092 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.72326 -38.23568 -37.79603 -37.74255 -36.78057 -33.04582 -32.24207 -31.09534 -29.38147 -28.65278 -27.28749 -26.98021 -24.15393 -23.16935 -22.77748 -20.13258 -19.25553 -18.62451 -18.23007 -17.27366 -16.79296 -16.49272 -16.34203 -16.01169 -15.65104 -15.23945 -15.22664 -14.59975 -14.53980 -14.44603 -14.08130 -14.05927 -13.96148 -13.82339 -13.57516 -13.40825 -13.33607 -13.08229 -12.99183 -12.67313 -12.65109 -12.60314 -12.54728 -12.28434 -11.86002 -11.75753 -11.09435 -11.00479 -10.71570 -10.65786 -10.41141 -10.17517 -9.89777 -0.69815 -0.34122 0.15249 0.97626 1.21859 1.30336 1.38073 1.62467 1.70338 1.78130 1.88830 2.24956 2.34242 2.78932 3.20958 3.25899 3.43212 3.64321 3.74067 3.84972 4.10732 4.11295 4.27350 4.33994 4.37218 4.54802 4.56061 4.56468 4.59016 4.60886 4.63078 4.72370 4.77175 4.84621 4.91044 4.94274 5.00895 5.02589 5.19625 5.32753 5.41318 5.54092 5.66322 6.36129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 0.993 3.007 3 C -0.441 4.441 4 C -0.396 4.396 5 C 0.114 3.886 6 N -0.982 5.982 7 S 2.691 3.309 8 O -0.949 6.949 9 O -0.954 6.954 10 C -0.674 4.674 11 C -0.015 4.015 12 C -0.148 4.148 13 C -0.066 4.066 14 C -0.089 4.089 15 O -0.534 6.534 16 Si 0.949 3.051 17 H -0.248 1.248 18 H -0.250 1.250 19 H -0.249 1.249 20 C -0.111 4.111 21 C -0.018 4.018 22 C -0.181 4.181 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.379 0.621 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.100 0.900 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 4.078 -2.943 5.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.188 2.812 3 C -0.550 4.550 4 C -0.484 4.484 5 C -0.011 4.011 6 N -0.822 5.822 7 S 2.782 3.218 8 O -0.939 6.939 9 O -0.945 6.945 10 C -0.760 4.760 11 C -0.034 4.034 12 C -0.166 4.166 13 C -0.066 4.066 14 C -0.200 4.200 15 O -0.339 6.339 16 Si 0.771 3.229 17 H -0.171 1.171 18 H -0.173 1.173 19 H -0.173 1.173 20 C -0.130 4.130 21 C -0.037 4.037 22 C -0.352 4.352 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.226 0.774 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.118 0.882 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.912 3.630 -3.153 5.174 hybrid contribution 0.434 -0.359 0.266 0.623 sum 2.347 3.271 -2.888 4.954 Atomic orbital electron populations 1.25996 1.19141 1.05121 1.05049 0.80495 0.68153 0.66728 0.65783 1.25968 1.06897 1.17135 1.05006 1.26590 1.07671 1.04292 1.09817 1.20791 1.02671 0.99380 0.78210 1.57605 1.89454 1.20381 1.14740 1.02144 0.73955 0.72411 0.73297 1.93587 1.75472 1.83831 1.41057 1.93584 1.77632 1.55323 1.67937 1.31160 1.27298 1.12513 1.05062 1.20879 0.93679 0.92013 0.96868 1.21209 0.95554 1.01766 0.98074 1.20704 0.96623 0.95148 0.94156 1.25147 0.94712 1.01633 0.98485 1.86544 1.75555 1.35028 1.36779 0.85674 0.80913 0.80022 0.76310 1.17141 1.17339 1.17260 1.21189 0.94170 0.98063 0.99590 1.21019 0.94508 0.94468 0.93745 1.26858 1.07087 0.91595 1.09655 0.90600 0.90598 0.90717 0.90733 0.90638 0.90680 0.89211 0.88545 0.92082 0.90743 0.83883 0.85170 0.85858 0.77388 0.84340 0.83906 0.88178 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 1.11 8.65 101.05 0.87 1.98 16 2 Si 0.99 -3.83 13.64 -169.99 -2.32 -6.15 16 3 C -0.44 1.60 8.65 101.05 0.87 2.47 16 4 C -0.40 1.26 6.06 38.33 0.23 1.49 16 5 C 0.11 -0.12 5.70 -3.66 -0.02 -0.14 16 6 N -0.98 -0.05 3.40 -56.29 -0.19 -0.25 16 7 S 2.69 7.20 5.74 -107.50 -0.62 6.58 16 8 O -0.95 -4.77 16.22 -57.17 -0.93 -5.69 16 9 O -0.95 -4.78 16.41 -57.17 -0.94 -5.72 16 10 C -0.67 -1.18 5.97 -39.58 -0.24 -1.42 16 11 C -0.02 -0.02 9.52 -39.58 -0.38 -0.39 16 12 C -0.15 -0.05 8.67 -39.58 -0.34 -0.39 16 13 C -0.07 -0.01 5.35 -104.62 -0.56 -0.57 16 14 C -0.09 0.10 2.80 36.01 0.10 0.20 16 15 O -0.53 0.14 12.83 -35.23 -0.45 -0.31 16 16 Si 0.95 -1.19 25.14 -169.99 -4.27 -5.47 16 17 H -0.25 0.20 7.11 56.52 0.40 0.60 16 18 H -0.25 -0.05 7.11 56.52 0.40 0.35 16 19 H -0.25 0.25 7.04 56.52 0.40 0.65 16 20 C -0.11 -0.05 9.69 -39.58 -0.38 -0.43 16 21 C -0.02 -0.02 9.52 -39.58 -0.38 -0.40 16 22 C -0.18 0.31 5.98 60.83 0.36 0.67 16 23 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 24 H 0.07 -0.22 7.96 -51.93 -0.41 -0.64 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 26 H 0.07 -0.26 7.96 -51.93 -0.41 -0.68 16 27 H 0.07 -0.27 7.96 -51.92 -0.41 -0.68 16 28 H 0.07 -0.27 7.96 -51.93 -0.41 -0.68 16 29 H 0.09 -0.33 8.06 -51.93 -0.42 -0.75 16 30 H 0.10 -0.38 8.06 -51.93 -0.42 -0.79 16 31 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.07 -0.06 7.91 -51.93 -0.41 -0.47 16 33 H 0.14 -0.04 7.61 -52.49 -0.40 -0.44 16 34 H 0.13 -0.18 4.87 -52.49 -0.26 -0.43 16 35 H 0.12 -0.27 7.96 -51.93 -0.41 -0.69 16 36 H 0.38 -1.24 8.70 45.56 0.40 -0.84 16 37 H 0.14 -0.13 8.06 -52.49 -0.42 -0.56 16 38 H 0.14 -0.02 7.62 -52.49 -0.40 -0.42 16 39 H 0.10 -0.15 7.47 -51.93 -0.39 -0.53 16 40 H 0.08 -0.24 8.06 -51.93 -0.42 -0.66 16 LS Contribution 341.51 15.07 5.15 5.15 Total: 0.00 -8.44 341.51 -9.68 -18.12 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: -5.25 Total: -9.32 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 0.15 Total: 3.07 kcal Atomic # 7 Polarization: -0.05 SS G_CDS: -0.19 Total: -0.25 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -2.32 Total: -11.73 kcal Atomic # 14 Polarization: -5.03 SS G_CDS: -6.59 Total: -11.62 kcal Atomic # 16 Polarization: 7.20 SS G_CDS: -0.62 Total: 6.58 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -8.44 -9.68 -18.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16914276_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.821 kcal (2) G-P(sol) polarization free energy of solvation -8.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds