Wall clock time and date at job start Mon Mar 8 2021 10:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86307 * 111.70098 * 2 1 4 4 C 1.90119 * 111.99375 * 233.50074 * 2 1 3 5 5 C 1.55210 * 98.88653 * 271.16901 * 4 2 1 6 6 N 1.45024 * 115.98063 * 339.71602 * 5 4 2 7 7 S 1.65603 * 120.86040 * 179.15502 * 6 5 4 8 8 O 1.42100 * 106.40093 * 203.56230 * 7 6 5 9 9 O 1.42094 * 106.39881 * 336.48675 * 7 6 5 10 10 C 1.76201 * 107.21480 * 90.02862 * 7 6 5 11 11 C 1.38239 * 119.99534 * 269.72188 * 10 7 6 12 12 C 1.38238 * 119.99735 * 179.78836 * 11 10 7 13 13 C 1.38239 * 119.99896 * 0.46623 * 12 11 10 14 14 C 1.50702 * 119.99911 * 179.78939 * 13 12 11 15 15 O 1.42902 * 109.46741 * 244.98087 * 14 13 12 16 16 Si 1.86296 * 109.47025 * 4.97572 * 14 13 12 17 17 H 1.48509 * 109.47027 * 60.00704 * 16 14 13 18 18 H 1.48504 * 109.47141 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47616 * 300.00056 * 16 14 13 20 20 C 1.38231 * 120.00023 * 359.76607 * 13 12 11 21 21 C 1.38234 * 120.00225 * 90.00031 * 10 7 6 22 22 C 1.48279 * 118.27649 * 359.17759 * 6 5 4 23 23 H 1.09002 * 109.47089 * 293.50497 * 1 2 3 24 24 H 1.09001 * 109.47273 * 53.50348 * 1 2 3 25 25 H 1.08998 * 109.47278 * 173.50336 * 1 2 3 26 26 H 1.09001 * 109.47329 * 186.49937 * 3 2 1 27 27 H 1.09008 * 109.46925 * 306.49678 * 3 2 1 28 28 H 1.08998 * 109.47056 * 66.49104 * 3 2 1 29 29 H 1.09003 * 111.51844 * 153.74089 * 4 2 1 30 30 H 1.09004 * 111.49026 * 28.58592 * 4 2 1 31 31 H 1.09002 * 108.15421 * 218.08057 * 5 4 2 32 32 H 1.08999 * 108.15288 * 101.34778 * 5 4 2 33 33 H 1.07999 * 120.00201 * 0.02562 * 11 10 7 34 34 H 1.08001 * 120.00013 * 180.25529 * 12 11 10 35 35 H 1.08998 * 109.47131 * 124.98080 * 14 13 12 36 36 H 0.96695 * 114.00492 * 59.99943 * 15 14 13 37 37 H 1.08002 * 120.00318 * 179.97438 * 20 13 12 38 38 H 1.07997 * 119.99651 * 359.97438 * 21 10 7 39 39 H 1.09000 * 111.29667 * 139.18370 * 22 6 5 40 40 H 1.08997 * 111.30726 * 263.80268 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5519 1.7310 0.0000 4 6 2.5750 -1.0486 -1.4171 5 6 2.6358 -2.4202 -0.6933 6 7 2.6236 -2.3748 0.7562 7 16 2.6633 -3.7682 1.6501 8 8 2.0982 -3.4500 2.9145 9 8 2.1595 -4.7979 0.8105 10 6 4.3578 -4.1507 1.9447 11 6 5.0504 -4.9512 1.0555 12 6 6.3810 -5.2477 1.2843 13 6 7.0165 -4.7517 2.4073 14 6 8.4658 -5.0789 2.6592 15 8 8.5768 -5.8679 3.8454 16 14 9.1474 -6.0340 1.2121 17 1 9.0321 -5.2140 -0.0207 18 1 10.5758 -6.3559 1.4600 19 1 8.3779 -7.2928 1.0432 20 6 6.3227 -3.9553 3.2990 21 6 4.9932 -3.6552 3.0680 22 6 2.5742 -1.0483 1.4170 23 1 -0.3633 0.4099 0.9424 24 1 -0.3634 0.6112 -0.8261 25 1 -0.3634 -1.0210 -0.1163 26 1 3.6349 1.6911 -0.1163 27 1 2.1183 2.2946 -0.8262 28 1 2.3054 2.2202 0.9423 29 1 3.5680 -0.7058 -1.7082 30 1 1.8987 -1.0771 -2.2715 31 1 3.5453 -2.9310 -1.0094 32 1 1.7837 -3.0154 -1.0215 33 1 4.5529 -5.3417 0.1801 34 1 6.9232 -5.8696 0.5874 35 1 9.0307 -4.1550 2.7832 36 1 8.0976 -6.7069 3.8061 37 1 6.8190 -3.5681 4.1766 38 1 4.4509 -3.0332 3.7647 39 1 1.9040 -1.0589 2.2766 40 1 3.5708 -0.7089 1.6991 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16914276_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:48:24 Heat of formation + Delta-G solvation = -106.745867 kcal Electronic energy + Delta-G solvation = -22590.702659 eV Core-core repulsion = 19235.219951 eV Total energy + Delta-G solvation = -3355.482708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.092 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73576 -38.51203 -37.74812 -37.68838 -37.07301 -33.06568 -32.26991 -30.93867 -29.11978 -28.38953 -27.26330 -26.85607 -24.17893 -23.14733 -22.71001 -20.23113 -19.30967 -18.69299 -18.28433 -17.34041 -16.83810 -16.41111 -16.27955 -16.00098 -15.65743 -15.29399 -15.20163 -14.60838 -14.46106 -14.31715 -14.08732 -13.89946 -13.81178 -13.69773 -13.41805 -13.32204 -13.30921 -13.14686 -13.09653 -12.67997 -12.62716 -12.56601 -12.44019 -12.21597 -11.91893 -11.73135 -10.86645 -10.83013 -10.62581 -10.47982 -10.39483 -10.21227 -9.83121 -0.82237 -0.43107 0.11461 1.07884 1.40539 1.46688 1.47505 1.76167 1.86134 1.92983 2.03091 2.28653 2.48326 2.63541 3.08690 3.37034 3.48526 3.67969 3.75269 3.92315 4.10919 4.25324 4.28608 4.41397 4.43468 4.58682 4.73251 4.76952 4.78626 4.80573 4.84101 4.87860 4.91380 4.91843 4.92657 5.02283 5.17532 5.18860 5.26100 5.59124 5.64275 5.65647 5.69357 6.57545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.066 2.934 3 C -0.445 4.445 4 C -0.400 4.400 5 C 0.102 3.898 6 N -0.978 5.978 7 S 2.696 3.304 8 O -0.981 6.981 9 O -0.986 6.986 10 C -0.681 4.681 11 C -0.027 4.027 12 C -0.152 4.152 13 C -0.065 4.065 14 C -0.086 4.086 15 O -0.548 6.548 16 Si 0.979 3.021 17 H -0.252 1.252 18 H -0.271 1.271 19 H -0.252 1.252 20 C -0.115 4.115 21 C -0.029 4.029 22 C -0.210 4.210 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.390 0.610 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.092 0.908 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 5.069 -3.565 6.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.257 2.743 3 C -0.555 4.555 4 C -0.487 4.487 5 C -0.023 4.023 6 N -0.819 5.819 7 S 2.789 3.211 8 O -0.971 6.971 9 O -0.976 6.976 10 C -0.769 4.769 11 C -0.046 4.046 12 C -0.171 4.171 13 C -0.066 4.066 14 C -0.197 4.197 15 O -0.355 6.355 16 Si 0.802 3.198 17 H -0.175 1.175 18 H -0.196 1.196 19 H -0.176 1.176 20 C -0.134 4.134 21 C -0.048 4.048 22 C -0.378 4.378 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.240 0.760 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.111 0.889 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.837 4.594 -3.760 6.580 hybrid contribution 0.159 -0.668 0.477 0.836 sum 2.996 3.926 -3.284 5.931 Atomic orbital electron populations 1.26244 1.21146 1.04496 1.05260 0.79435 0.65907 0.65707 0.63287 1.26011 1.07227 1.16936 1.05287 1.26710 1.08763 1.02930 1.10266 1.21011 1.02741 1.01003 0.77522 1.57451 1.89278 1.20017 1.15159 1.01678 0.74241 0.72536 0.72629 1.93536 1.76624 1.84352 1.42580 1.93532 1.78710 1.56962 1.68388 1.30988 1.26567 1.13466 1.05839 1.21085 0.94240 0.92095 0.97198 1.21429 0.95318 1.01800 0.98514 1.20895 0.97247 0.94599 0.93842 1.25205 0.93899 1.02205 0.98355 1.86516 1.75890 1.35897 1.37191 0.85249 0.79229 0.79516 0.75784 1.17539 1.19577 1.17559 1.21392 0.93891 0.97995 1.00118 1.21191 0.95062 0.94790 0.93743 1.27374 1.08250 0.91204 1.10922 0.90794 0.89893 0.91903 0.90308 0.90179 0.90569 0.88064 0.87514 0.91505 0.91486 0.83109 0.83649 0.84663 0.76045 0.82998 0.83321 0.88923 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.19 8.65 113.37 0.98 3.17 16 2 Si 1.07 -8.80 13.64 68.60 0.94 -7.86 16 3 C -0.45 3.86 8.65 113.37 0.98 4.84 16 4 C -0.40 2.88 6.06 72.74 0.44 3.32 16 5 C 0.10 -0.17 5.70 87.41 0.50 0.33 16 6 N -0.98 -1.12 3.40 -331.99 -1.13 -2.25 16 7 S 2.70 19.37 5.74 -56.49 -0.32 19.04 16 8 O -0.98 -12.02 16.22 -128.00 -2.08 -14.10 16 9 O -0.99 -11.99 16.41 -128.00 -2.10 -14.09 16 10 C -0.68 -3.12 5.97 22.27 0.13 -2.98 16 11 C -0.03 -0.08 9.52 22.27 0.21 0.14 16 12 C -0.15 -0.07 8.67 22.27 0.19 0.12 16 13 C -0.07 0.01 5.35 -19.87 -0.11 -0.09 16 14 C -0.09 0.26 2.80 71.24 0.20 0.46 16 15 O -0.55 0.66 12.83 -148.98 -1.91 -1.26 16 16 Si 0.98 -2.99 25.14 68.60 1.72 -1.26 16 17 H -0.25 0.61 7.11 99.48 0.71 1.32 16 18 H -0.27 -0.13 7.11 99.48 0.71 0.58 16 19 H -0.25 0.68 7.04 99.48 0.70 1.38 16 20 C -0.12 -0.08 9.69 22.27 0.22 0.14 16 21 C -0.03 -0.08 9.52 22.27 0.21 0.13 16 22 C -0.21 0.60 5.98 127.42 0.76 1.37 16 23 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 24 H 0.08 -0.51 7.96 -2.39 -0.02 -0.53 16 25 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 26 H 0.08 -0.70 7.96 -2.39 -0.02 -0.72 16 27 H 0.08 -0.71 7.96 -2.38 -0.02 -0.73 16 28 H 0.08 -0.64 7.96 -2.39 -0.02 -0.66 16 29 H 0.10 -0.92 8.06 -2.39 -0.02 -0.93 16 30 H 0.11 -0.95 8.06 -2.38 -0.02 -0.97 16 31 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.07 -0.03 7.91 -2.39 -0.02 -0.05 16 33 H 0.15 0.06 7.61 -2.91 -0.02 0.04 16 34 H 0.15 -0.48 4.87 -2.91 -0.01 -0.50 16 35 H 0.14 -0.75 7.96 -2.39 -0.02 -0.77 16 36 H 0.39 -2.75 8.70 -74.06 -0.64 -3.39 16 37 H 0.15 -0.38 8.06 -2.91 -0.02 -0.41 16 38 H 0.15 0.13 7.62 -2.91 -0.02 0.10 16 39 H 0.09 -0.14 7.47 -2.39 -0.02 -0.16 16 40 H 0.09 -0.56 8.06 -2.39 -0.02 -0.58 16 Total: 0.00 -19.53 341.51 0.98 -18.55 By element: Atomic # 1 Polarization: -8.85 SS G_CDS: 1.14 Total: -7.71 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 4.72 Total: 10.93 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -1.13 Total: -2.25 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -6.09 Total: -29.44 kcal Atomic # 14 Polarization: -11.78 SS G_CDS: 2.66 Total: -9.12 kcal Atomic # 16 Polarization: 19.37 SS G_CDS: -0.32 Total: 19.04 kcal Total: -19.53 0.98 -18.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16914276_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.197 kcal (2) G-P(sol) polarization free energy of solvation -19.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds