Wall clock time and date at job start Mon Mar 8 2021 11:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86309 * 109.47156 * 2 1 4 4 C 1.50696 * 109.47002 * 119.99690 * 2 1 3 5 5 C 1.33394 * 122.53650 * 75.00264 * 4 2 1 6 6 S 1.76196 * 125.20448 * 0.02562 * 5 4 2 7 7 O 1.42103 * 106.40415 * 66.17648 * 6 5 4 8 8 O 1.42100 * 106.39820 * 293.25923 * 6 5 4 9 9 N 1.65600 * 107.22161 * 179.71944 * 6 5 4 10 10 C 1.46498 * 120.00020 * 64.99284 * 9 6 5 11 11 C 1.52996 * 109.47353 * 165.00368 * 10 9 6 12 12 F 1.39905 * 109.47193 * 305.00673 * 11 10 9 13 13 C 1.53002 * 109.47105 * 65.00147 * 11 10 9 14 14 C 1.52997 * 109.47297 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47200 * 300.00208 * 14 13 11 16 16 H 1.08990 * 109.47398 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.46867 * 300.00264 * 15 14 13 18 18 O 1.42903 * 109.46726 * 294.99609 * 17 15 14 19 19 C 1.53002 * 109.47165 * 59.99711 * 15 14 13 20 20 C 1.52991 * 109.47387 * 185.00440 * 11 10 9 21 21 S 1.75882 * 109.59078 * 179.74821 * 5 4 2 22 22 C 1.75878 * 90.97458 * 0.22649 * 21 5 4 23 23 C 1.33393 * 109.59303 * 0.02562 * 22 21 5 24 24 H 0.96706 * 114.00059 * 59.99842 * 1 2 3 25 25 H 1.08995 * 109.47071 * 240.00090 * 2 1 3 26 26 H 1.48497 * 109.99770 * 298.68349 * 3 2 1 27 27 H 1.48494 * 109.99878 * 59.99702 * 3 2 1 28 28 H 0.96998 * 119.99955 * 245.00154 * 9 6 5 29 29 H 1.09006 * 109.46707 * 45.00442 * 10 9 6 30 30 H 1.09005 * 109.47520 * 285.00965 * 10 9 6 31 31 H 1.09004 * 109.47011 * 300.00006 * 13 11 10 32 32 H 1.08996 * 109.46657 * 60.00207 * 13 11 10 33 33 H 1.09001 * 109.47187 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.47198 * 60.00040 * 14 13 11 35 35 H 1.09002 * 109.47398 * 54.99853 * 17 15 14 36 36 H 1.09001 * 109.47194 * 175.00033 * 17 15 14 37 37 H 0.96700 * 113.99509 * 180.02562 * 18 17 15 38 38 H 1.09004 * 109.46964 * 60.00333 * 19 15 14 39 39 H 1.08994 * 109.47359 * 180.02562 * 19 15 14 40 40 H 1.09001 * 109.47171 * 59.99963 * 20 11 10 41 41 H 1.08993 * 109.47443 * 299.99842 * 20 11 10 42 42 H 1.07999 * 125.20619 * 180.02562 * 22 21 5 43 43 H 1.07999 * 122.54047 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.8961 -2.0378 1.3572 6 16 1.2763 -3.1577 0.1463 7 8 2.1523 -3.0678 -0.9690 8 8 -0.1217 -2.9194 0.0577 9 7 1.4523 -4.6868 0.7571 10 6 0.6992 -5.0916 1.9467 11 6 0.7423 -6.6148 2.0838 12 9 0.2775 -7.2027 0.9024 13 6 2.1819 -7.0629 2.3442 14 6 2.2251 -8.5862 2.4806 15 6 1.3369 -9.0190 3.6489 16 1 1.3680 -10.1041 3.7464 17 6 1.8451 -8.3765 4.9411 18 8 3.1454 -8.8847 5.2463 19 6 -0.1027 -8.5709 3.3885 20 6 -0.1457 -7.0471 3.2522 21 16 2.5701 -2.4996 2.9147 22 6 2.8645 -0.8139 3.3209 23 6 2.4607 -0.0346 2.3164 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 1.5879 2.4586 -1.2242 27 1 1.5615 2.4679 1.2084 28 1 2.0541 -5.3145 0.3272 29 1 -0.3361 -4.7646 1.8499 30 1 1.1434 -4.6345 2.8310 31 1 2.8145 -6.7550 1.5117 32 1 2.5440 -6.6049 3.2646 33 1 3.2506 -8.9054 2.6666 34 1 1.8630 -9.0439 1.5600 35 1 1.8983 -7.2954 4.8129 36 1 1.1621 -8.6124 5.7572 37 1 3.5301 -8.5203 6.0552 38 1 -0.4647 -9.0286 2.4678 39 1 -0.7353 -8.8788 4.2209 40 1 -1.1713 -6.7278 3.0666 41 1 0.2164 -6.5891 4.1726 42 1 3.3048 -0.4632 4.2427 43 1 2.5450 1.0417 2.3460 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16921696_13652106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:37:16 Heat of formation + Delta-G solvation = -171.700106 kcal Electronic energy + Delta-G solvation = -30500.651568 eV Core-core repulsion = 26101.424557 eV Total energy + Delta-G solvation = -4399.227011 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.085 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.78169 -40.03027 -39.96007 -38.47473 -37.40678 -37.37809 -37.11925 -36.17689 -32.12388 -31.90439 -31.52568 -28.17603 -27.67958 -25.72058 -24.21772 -23.90457 -22.30232 -21.70148 -19.98523 -19.77920 -19.66708 -18.82819 -18.48877 -18.28793 -17.66249 -17.37407 -17.19491 -16.65268 -16.42005 -16.21293 -16.03493 -15.87332 -15.41259 -15.08120 -14.97540 -14.69464 -14.37245 -14.23045 -14.14057 -14.07420 -13.83449 -13.69614 -13.50305 -13.41257 -13.33476 -13.16822 -13.04875 -12.81384 -12.71811 -12.64587 -12.42722 -12.28871 -12.04832 -11.65659 -11.32525 -11.25788 -11.02697 -10.83863 -10.70283 -10.67686 -10.42294 -9.62218 -5.00179 -0.90738 -0.69072 0.18304 0.61947 1.12459 1.21933 1.55670 1.76306 1.84319 2.39991 3.09041 3.15310 3.30233 3.38319 3.44313 3.54321 3.63950 3.69478 3.82538 3.91411 3.95421 4.09006 4.14354 4.21062 4.24834 4.32442 4.37298 4.44133 4.53181 4.56647 4.62380 4.68433 4.73370 4.77162 4.90325 4.94573 5.01846 5.04822 5.12450 5.17986 5.31683 5.35969 5.40271 5.73753 6.39099 6.96776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.139 4.139 3 Si 0.799 3.201 4 C 0.040 3.960 5 C -0.800 4.800 6 S 2.727 3.273 7 O -0.979 6.979 8 O -0.966 6.966 9 N -1.108 6.108 10 C 0.086 3.914 11 C 0.118 3.882 12 F -0.215 7.215 13 C -0.142 4.142 14 C -0.111 4.111 15 C -0.091 4.091 16 H 0.067 0.933 17 C 0.074 3.926 18 O -0.595 6.595 19 C -0.111 4.111 20 C -0.145 4.145 21 S 0.242 5.758 22 C -0.147 4.147 23 C -0.177 4.177 24 H 0.398 0.602 25 H 0.079 0.921 26 H -0.279 1.279 27 H -0.267 1.267 28 H 0.430 0.570 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.216 0.784 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 1.774 8.322 9.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.248 4.248 3 Si 0.698 3.302 4 C 0.022 3.978 5 C -1.002 5.002 6 S 2.814 3.186 7 O -0.969 6.969 8 O -0.955 6.955 9 N -0.873 5.873 10 C -0.040 4.040 11 C 0.098 3.902 12 F -0.196 7.196 13 C -0.180 4.180 14 C -0.149 4.149 15 C -0.110 4.110 16 H 0.086 0.914 17 C -0.003 4.003 18 O -0.403 6.403 19 C -0.149 4.149 20 C -0.183 4.183 21 S 0.508 5.492 22 C -0.285 4.285 23 C -0.206 4.206 24 H 0.248 0.752 25 H 0.097 0.903 26 H -0.205 1.205 27 H -0.192 1.192 28 H 0.268 0.732 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.245 0.755 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.130 0.870 42 H 0.233 0.767 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.067 0.875 8.359 9.337 hybrid contribution -1.001 1.104 -0.890 1.735 sum 3.066 1.979 7.469 8.313 Atomic orbital electron populations 1.86642 1.16746 1.81133 1.50877 1.25560 0.85798 1.16214 0.97181 0.93631 0.89490 0.68856 0.78179 1.18189 0.93284 0.90810 0.95473 1.35418 1.28144 1.14359 1.22326 1.00751 0.73240 0.72090 0.72472 1.93579 1.67904 1.86399 1.49031 1.93602 1.31652 1.84764 1.85505 1.55225 1.58979 1.30228 1.42826 1.22281 0.98089 0.95855 0.87783 1.21255 0.96411 0.90001 0.82515 1.92850 1.90454 1.85703 1.50597 1.22248 0.93794 0.97199 1.04739 1.21428 1.00524 0.95010 0.97925 1.21135 0.94803 1.00546 0.94493 0.91446 1.22416 0.84030 0.97898 0.95971 1.86446 1.33191 1.71374 1.49276 1.21479 0.95639 0.94859 1.02892 1.22253 1.00640 0.97423 0.97965 1.83630 1.55106 1.06592 1.03892 1.26635 1.01676 0.96081 1.04064 1.20442 1.04118 1.03119 0.92928 0.75154 0.90344 1.20490 1.19250 0.73180 0.89052 0.87475 0.90257 0.87458 0.91193 0.92658 0.91388 0.92810 0.75523 0.91973 0.89643 0.89724 0.87032 0.76696 0.81019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -4.26 12.29 -148.36 -1.82 -6.09 16 2 C -0.14 -0.67 2.32 71.23 0.17 -0.50 16 3 Si 0.80 -1.21 30.43 68.60 2.09 0.87 16 4 C 0.04 0.18 5.16 -20.92 -0.11 0.07 16 5 C -0.80 -3.52 6.46 66.72 0.43 -3.09 16 6 S 2.73 22.46 5.07 -56.49 -0.29 22.17 16 7 O -0.98 -12.88 17.48 -128.00 -2.24 -15.11 16 8 O -0.97 -14.39 16.93 -125.86 -2.13 -16.52 16 9 N -1.11 -1.25 5.53 -187.49 -1.04 -2.29 16 10 C 0.09 -0.20 5.14 86.38 0.44 0.24 16 11 C 0.12 -0.29 0.87 -10.80 -0.01 -0.30 16 12 F -0.22 -0.96 15.59 44.97 0.70 -0.26 16 13 C -0.14 0.63 4.60 30.59 0.14 0.77 16 14 C -0.11 0.13 5.23 30.59 0.16 0.29 16 15 C -0.09 0.24 2.90 -10.79 -0.03 0.20 16 16 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 17 C 0.07 -0.43 5.72 71.98 0.41 -0.02 16 18 O -0.59 1.61 13.19 -148.98 -1.97 -0.36 16 19 C -0.11 0.43 5.33 30.61 0.16 0.60 16 20 C -0.14 0.83 4.73 30.61 0.14 0.97 16 21 S 0.24 -1.01 21.09 -56.49 -1.19 -2.20 16 22 C -0.15 0.85 11.23 66.72 0.75 1.60 16 23 C -0.18 0.25 8.74 21.22 0.19 0.44 16 24 H 0.40 -0.07 8.74 -74.05 -0.65 -0.71 16 25 H 0.08 0.40 7.23 -2.39 -0.02 0.38 16 26 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 27 H -0.27 -0.39 6.86 99.48 0.68 0.30 16 28 H 0.43 -0.62 7.40 -96.75 -0.72 -1.34 16 29 H 0.09 -0.05 7.75 -2.38 -0.02 -0.06 16 30 H 0.11 -0.87 6.25 -2.38 -0.01 -0.89 16 31 H 0.08 -0.38 6.90 -2.39 -0.02 -0.39 16 32 H 0.11 -0.93 6.32 -2.39 -0.02 -0.94 16 33 H 0.07 0.04 7.82 -2.39 -0.02 0.02 16 34 H 0.05 0.09 7.80 -2.38 -0.02 0.07 16 35 H 0.07 -0.67 4.83 -2.39 -0.01 -0.68 16 36 H 0.05 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.40 -4.30 9.12 -74.06 -0.68 -4.97 16 38 H 0.06 -0.03 7.80 -2.38 -0.02 -0.05 16 39 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.11 -1.22 6.55 -2.39 -0.02 -1.23 16 42 H 0.22 -2.91 8.06 -2.91 -0.02 -2.93 16 43 H 0.17 -0.91 5.57 -2.91 -0.02 -0.93 16 Total: 0.00 -28.29 360.71 -5.97 -34.26 By element: Atomic # 1 Polarization: -14.82 SS G_CDS: -0.93 Total: -15.75 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 2.85 Total: 1.28 kcal Atomic # 7 Polarization: -1.25 SS G_CDS: -1.04 Total: -2.29 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -8.16 Total: -38.08 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.70 Total: -0.26 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.09 Total: 0.87 kcal Atomic # 16 Polarization: 21.45 SS G_CDS: -1.48 Total: 19.97 kcal Total: -28.29 -5.97 -34.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16921696_13652106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.441 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds