Wall clock time and date at job start Mon Mar 8 2021 09:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00368 * 2 1 4 4 C 1.53001 * 112.90310 * 66.60801 * 3 2 1 5 5 F 1.39900 * 109.47255 * 283.43033 * 4 3 2 6 6 F 1.39893 * 109.47464 * 43.43500 * 4 3 2 7 7 F 1.39906 * 109.46879 * 163.43608 * 4 3 2 8 8 C 1.53786 * 113.61571 * 295.35896 * 3 2 1 9 9 C 1.53776 * 87.07879 * 270.87986 * 8 3 2 10 10 H 1.09007 * 113.61322 * 220.01501 * 9 8 3 11 11 C 1.53005 * 113.61508 * 89.11735 * 9 8 3 12 12 S 1.81392 * 109.47170 * 174.99585 * 11 9 8 13 13 O 1.42103 * 110.54593 * 288.21834 * 12 11 9 14 14 O 1.42098 * 110.54604 * 64.97132 * 12 11 9 15 15 O 1.52203 * 104.44913 * 176.59341 * 12 11 9 16 16 C 1.35915 * 113.99925 * 73.88449 * 15 12 11 17 17 C 1.38708 * 120.04471 * 82.68829 * 16 15 12 18 18 C 1.38166 * 119.94911 * 179.97438 * 17 16 15 19 19 C 1.38317 * 120.04962 * 0.02562 * 18 17 16 20 20 Br 1.89100 * 119.95514 * 180.02562 * 19 18 17 21 21 C 1.38362 * 120.09193 * 359.97438 * 19 18 17 22 22 C 1.50706 * 119.97938 * 180.02562 * 21 19 18 23 23 C 1.38125 * 120.04431 * 359.72308 * 21 19 18 24 24 C 1.50702 * 120.02142 * 180.27877 * 23 21 19 25 25 O 1.42898 * 109.47497 * 37.36918 * 24 23 21 26 26 Si 1.86307 * 109.47071 * 157.37223 * 24 23 21 27 27 C 1.53774 * 113.61842 * 197.85917 * 3 2 1 28 28 H 1.08993 * 109.47217 * 179.36574 * 1 2 3 29 29 H 1.08999 * 109.47116 * 299.37063 * 1 2 3 30 30 H 1.09007 * 109.46866 * 59.36896 * 1 2 3 31 31 H 1.08997 * 113.61086 * 25.43069 * 8 3 2 32 32 H 1.09001 * 113.61530 * 156.32709 * 8 3 2 33 33 H 1.08998 * 109.46805 * 295.00205 * 11 9 8 34 34 H 1.09003 * 109.46955 * 54.99562 * 11 9 8 35 35 H 1.07996 * 120.02645 * 0.03051 * 17 16 15 36 36 H 1.08001 * 119.97134 * 179.97438 * 18 17 16 37 37 H 1.08991 * 109.47119 * 89.99843 * 22 21 19 38 38 H 1.09003 * 109.47004 * 210.00195 * 22 21 19 39 39 H 1.08997 * 109.46771 * 329.99375 * 22 21 19 40 40 H 1.09005 * 109.46725 * 277.36368 * 24 23 21 41 41 H 0.96696 * 113.99982 * 59.99865 * 25 24 23 42 42 H 1.48494 * 110.00262 * 180.02562 * 26 24 23 43 43 H 1.48504 * 109.99640 * 301.31525 * 26 24 23 44 44 H 1.08997 * 113.61982 * 203.66679 * 27 3 2 45 45 H 1.09005 * 113.61659 * 334.57270 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7414 2.0770 1.2936 5 9 0.4257 2.5526 1.2879 6 9 1.9256 1.2279 2.3900 7 9 2.6269 3.1562 1.3855 8 6 1.7096 2.1137 -1.2733 9 6 2.9801 1.4899 -1.8746 10 1 3.5714 2.1886 -2.4666 11 6 2.7299 0.1630 -2.5941 12 16 4.2648 -0.3960 -3.3827 13 8 4.5722 0.4164 -4.5074 14 8 5.2497 -0.6929 -2.4024 15 8 3.9124 -1.7497 -3.9827 16 6 3.1360 -1.6758 -5.0958 17 6 3.7167 -1.4392 -6.3331 18 6 2.9256 -1.3650 -7.4634 19 6 1.5556 -1.5259 -7.3618 20 35 0.4755 -1.4246 -8.9106 21 6 0.9744 -1.7620 -6.1285 22 6 -0.5185 -1.9374 -6.0208 23 6 1.7622 -1.8431 -4.9969 24 6 1.1293 -2.1065 -3.6548 25 8 0.0499 -3.0299 -3.8101 26 14 2.4010 -2.8263 -2.4991 27 6 3.4860 1.3227 -0.4321 28 1 -0.3633 -1.0275 -0.0114 29 1 -0.3633 0.5040 0.8956 30 1 -0.3633 0.5236 -0.8843 31 1 0.7927 1.8088 -1.7776 32 1 1.7775 3.1924 -1.1320 33 1 2.3987 -0.5844 -1.8731 34 1 1.9605 0.3010 -3.3538 35 1 4.7864 -1.3140 -6.4130 36 1 3.3773 -1.1804 -8.4269 37 1 -0.7698 -2.9916 -6.1373 38 1 -0.8558 -1.5892 -5.0445 39 1 -1.0097 -1.3582 -6.8026 40 1 0.7511 -1.1713 -3.2418 41 1 0.3139 -3.8860 -4.1740 42 1 1.7893 -3.0912 -1.1722 43 1 2.9477 -4.0852 -3.0661 44 1 4.0397 2.1850 -0.0609 45 1 4.0032 0.3792 -0.2575 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16926660_17541816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:50:50 Heat of formation + Delta-G solvation = -239.254145 kcal Electronic energy + Delta-G solvation = -41702.391152 eV Core-core repulsion = 35834.637916 eV Total energy + Delta-G solvation = -5867.753236 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 475.009 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -51.19826 -48.74650 -48.62478 -43.03460 -41.67144 -40.25472 -38.52682 -38.13390 -37.53431 -37.34260 -34.10802 -33.62592 -32.17755 -30.91831 -28.83466 -28.51284 -27.93980 -27.00714 -26.88518 -24.51555 -23.78551 -22.97153 -21.71775 -20.84263 -20.05403 -19.62014 -19.52725 -19.37888 -19.17281 -18.83853 -18.57325 -17.54024 -17.37855 -16.94611 -16.73687 -16.64601 -16.51668 -15.98825 -15.81179 -15.65767 -15.54644 -15.40232 -15.27140 -15.15208 -15.04667 -14.94549 -14.82535 -14.78980 -14.74699 -14.45231 -14.31493 -14.06513 -13.59819 -13.49615 -13.47009 -13.45339 -13.35312 -13.30701 -13.23195 -13.15998 -13.05569 -12.57188 -12.47498 -12.44802 -12.23957 -12.09733 -11.74094 -11.63159 -11.33294 -10.98848 -10.92244 -10.17554 -10.01288 -5.08879 -1.43385 -0.54813 -0.29401 0.27277 0.61486 0.94573 1.49825 1.60428 1.83021 1.89306 1.92305 2.21245 2.43983 2.54531 2.61025 2.71897 2.81991 2.91427 2.96868 3.04263 3.24567 3.27457 3.37129 3.43630 3.55477 3.67392 3.72641 3.90834 3.97933 4.02018 4.10790 4.13679 4.16300 4.22089 4.29820 4.33074 4.33450 4.40724 4.54505 4.54931 4.60512 4.61845 4.63998 4.68233 4.92787 5.02823 5.23954 5.53173 6.06335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.332 6.332 3 C 0.039 3.961 4 C 0.438 3.562 5 F -0.181 7.181 6 F -0.172 7.172 7 F -0.174 7.174 8 C -0.137 4.137 9 C -0.087 4.087 10 H 0.115 0.885 11 C -0.648 4.648 12 S 2.571 3.429 13 O -0.931 6.931 14 O -0.898 6.898 15 O -0.630 6.630 16 C 0.068 3.932 17 C -0.079 4.079 18 C -0.067 4.067 19 C -0.079 4.079 20 Br -0.022 7.022 21 C -0.020 4.020 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.073 4.073 25 O -0.518 6.518 26 Si 0.597 3.403 27 C -0.127 4.127 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.380 0.620 42 H -0.222 1.222 43 H -0.246 1.246 44 H 0.128 0.872 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.532 1.622 -3.208 4.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.249 6.249 3 C -0.004 4.004 4 C 0.383 3.617 5 F -0.162 7.162 6 F -0.154 7.154 7 F -0.155 7.155 8 C -0.175 4.175 9 C -0.107 4.107 10 H 0.133 0.867 11 C -0.773 4.773 12 S 2.666 3.334 13 O -0.930 6.930 14 O -0.896 6.896 15 O -0.589 6.589 16 C 0.027 3.973 17 C -0.100 4.100 18 C -0.087 4.087 19 C -0.160 4.160 20 Br 0.064 6.936 21 C -0.022 4.022 22 C -0.180 4.180 23 C -0.121 4.121 24 C -0.183 4.183 25 O -0.325 6.325 26 Si 0.496 3.504 27 C -0.164 4.164 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.148 0.852 41 H 0.229 0.771 42 H -0.147 1.147 43 H -0.171 1.171 44 H 0.146 0.854 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.218 1.094 -3.140 3.997 hybrid contribution -1.082 -0.584 0.335 1.274 sum -3.300 0.510 -2.804 4.361 Atomic orbital electron populations 1.23195 0.79392 1.04544 1.01819 1.88069 1.21210 1.21825 1.93832 1.23966 0.99795 0.86531 0.90089 1.21106 0.74289 0.78661 0.87604 1.93193 1.36961 1.89224 1.96872 1.93229 1.94822 1.70310 1.56999 1.93187 1.68623 1.57110 1.96586 1.23607 0.99256 1.01154 0.93513 1.21674 0.99497 0.93503 0.96013 0.86721 1.30946 1.24229 1.07999 1.14107 1.06220 0.77188 0.74066 0.75976 1.93686 1.82466 1.68372 1.48445 1.93691 1.53651 1.80911 1.61348 1.85668 1.70189 1.58199 1.44882 1.18001 0.87924 1.07861 0.83510 1.21391 1.02179 0.96948 0.89503 1.21172 0.91191 0.96757 0.99587 1.22121 0.94992 1.05948 0.92948 1.96829 1.67566 1.97029 1.32128 1.19554 0.97523 0.95698 0.89463 1.21146 0.88410 1.03775 1.04637 1.20276 0.91021 1.03198 0.97637 1.25245 0.97433 0.98282 0.97321 1.86615 1.32110 1.27165 1.86591 0.95007 0.82003 0.92243 0.81133 1.23527 0.91748 1.07286 0.93861 0.87948 0.92494 0.92422 0.88236 0.86592 0.82785 0.83119 0.82445 0.82813 0.89626 0.88904 0.90565 0.85195 0.77124 1.14683 1.17052 0.85366 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.40 101.05 1.05 1.04 16 2 O -0.33 0.28 8.35 -35.23 -0.29 -0.02 16 3 C 0.04 -0.06 0.85 -89.81 -0.08 -0.13 16 4 C 0.44 0.09 2.53 37.16 0.09 0.19 16 5 F -0.18 -0.08 15.34 2.25 0.03 -0.05 16 6 F -0.17 -0.37 17.09 2.25 0.04 -0.33 16 7 F -0.17 -0.03 15.82 2.25 0.04 0.00 16 8 C -0.14 0.53 6.51 -25.92 -0.17 0.37 16 9 C -0.09 0.31 3.84 -89.81 -0.35 -0.04 16 10 H 0.11 -0.60 8.13 -51.93 -0.42 -1.03 16 11 C -0.65 1.94 3.23 37.16 0.12 2.06 16 12 S 2.57 -0.13 4.40 -107.50 -0.47 -0.60 16 13 O -0.93 -1.17 15.85 -67.04 -1.06 -2.23 16 14 O -0.90 -2.14 18.02 -67.04 -1.21 -3.35 16 15 O -0.63 -0.13 5.56 -51.80 -0.29 -0.42 16 16 C 0.07 -0.02 4.51 -39.22 -0.18 -0.20 16 17 C -0.08 0.06 8.61 -39.43 -0.34 -0.28 16 18 C -0.07 0.10 9.78 -39.58 -0.39 -0.29 16 19 C -0.08 0.08 6.22 -39.51 -0.25 -0.16 16 20 Br -0.02 0.02 31.77 -68.01 -2.16 -2.14 16 21 C -0.02 0.03 5.83 -104.61 -0.61 -0.58 16 22 C -0.12 0.29 7.91 36.01 0.28 0.58 16 23 C -0.12 0.15 4.78 -104.48 -0.50 -0.35 16 24 C -0.07 0.14 1.73 36.01 0.06 0.20 16 25 O -0.52 0.97 9.59 -35.23 -0.34 0.63 16 26 Si 0.60 0.36 23.07 -169.99 -3.92 -3.56 16 27 C -0.13 0.30 6.89 -25.92 -0.18 0.12 16 28 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 29 H 0.06 -0.09 6.46 -51.93 -0.34 -0.43 16 30 H 0.06 -0.24 6.63 -51.93 -0.34 -0.58 16 31 H 0.10 -0.51 6.62 -51.93 -0.34 -0.86 16 32 H 0.12 -0.57 8.07 -51.93 -0.42 -0.99 16 33 H 0.15 -0.43 2.53 -51.93 -0.13 -0.56 16 34 H 0.15 -0.87 6.22 -51.92 -0.32 -1.19 16 35 H 0.16 -0.32 7.93 -52.49 -0.42 -0.74 16 36 H 0.15 -0.53 8.06 -52.49 -0.42 -0.95 16 37 H 0.09 -0.24 7.95 -51.93 -0.41 -0.65 16 38 H 0.09 -0.23 6.24 -51.93 -0.32 -0.56 16 39 H 0.08 -0.18 6.64 -51.93 -0.34 -0.52 16 40 H 0.13 -0.53 6.10 -51.93 -0.32 -0.85 16 41 H 0.38 -1.42 8.70 45.56 0.40 -1.03 16 42 H -0.22 -0.50 7.11 56.52 0.40 -0.10 16 43 H -0.25 -0.82 7.11 56.52 0.40 -0.42 16 44 H 0.13 -0.48 7.00 -51.93 -0.36 -0.84 16 45 H 0.11 -0.23 8.03 -51.93 -0.42 -0.65 16 LS Contribution 382.15 15.07 5.76 5.76 Total: 0.00 -7.62 382.15 -9.85 -17.47 By element: Atomic # 1 Polarization: -9.11 SS G_CDS: -4.56 Total: -13.67 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.42 Total: 2.52 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: -3.19 Total: -5.40 kcal Atomic # 9 Polarization: -0.49 SS G_CDS: 0.11 Total: -0.38 kcal Atomic # 14 Polarization: 0.36 SS G_CDS: -3.92 Total: -3.56 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -0.47 Total: -0.60 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.16 Total: -2.14 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -7.62 -9.85 -17.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16926660_17541816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.784 kcal (2) G-P(sol) polarization free energy of solvation -7.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds