Wall clock time and date at job start Mon Mar 8 2021 09:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00368 * 2 1 4 4 C 1.53001 * 112.90310 * 66.60801 * 3 2 1 5 5 F 1.39900 * 109.47255 * 283.43033 * 4 3 2 6 6 F 1.39893 * 109.47464 * 43.43500 * 4 3 2 7 7 F 1.39906 * 109.46879 * 163.43608 * 4 3 2 8 8 C 1.53786 * 113.61571 * 295.35896 * 3 2 1 9 9 C 1.53776 * 87.07879 * 270.87986 * 8 3 2 10 10 H 1.09007 * 113.61322 * 220.01501 * 9 8 3 11 11 C 1.53005 * 113.61508 * 89.11735 * 9 8 3 12 12 S 1.81392 * 109.47170 * 174.99585 * 11 9 8 13 13 O 1.42103 * 110.54593 * 288.21834 * 12 11 9 14 14 O 1.42098 * 110.54604 * 64.97132 * 12 11 9 15 15 O 1.52203 * 104.44913 * 176.59341 * 12 11 9 16 16 C 1.35915 * 113.99925 * 73.88449 * 15 12 11 17 17 C 1.38708 * 120.04471 * 82.68829 * 16 15 12 18 18 C 1.38166 * 119.94911 * 179.97438 * 17 16 15 19 19 C 1.38317 * 120.04962 * 0.02562 * 18 17 16 20 20 Br 1.89100 * 119.95514 * 180.02562 * 19 18 17 21 21 C 1.38362 * 120.09193 * 359.97438 * 19 18 17 22 22 C 1.50706 * 119.97938 * 180.02562 * 21 19 18 23 23 C 1.38125 * 120.04431 * 359.72308 * 21 19 18 24 24 C 1.50702 * 120.02142 * 180.27877 * 23 21 19 25 25 O 1.42898 * 109.47497 * 37.36918 * 24 23 21 26 26 Si 1.86307 * 109.47071 * 157.37223 * 24 23 21 27 27 C 1.53774 * 113.61842 * 197.85917 * 3 2 1 28 28 H 1.08993 * 109.47217 * 179.36574 * 1 2 3 29 29 H 1.08999 * 109.47116 * 299.37063 * 1 2 3 30 30 H 1.09007 * 109.46866 * 59.36896 * 1 2 3 31 31 H 1.08997 * 113.61086 * 25.43069 * 8 3 2 32 32 H 1.09001 * 113.61530 * 156.32709 * 8 3 2 33 33 H 1.08998 * 109.46805 * 295.00205 * 11 9 8 34 34 H 1.09003 * 109.46955 * 54.99562 * 11 9 8 35 35 H 1.07996 * 120.02645 * 0.03051 * 17 16 15 36 36 H 1.08001 * 119.97134 * 179.97438 * 18 17 16 37 37 H 1.08991 * 109.47119 * 89.99843 * 22 21 19 38 38 H 1.09003 * 109.47004 * 210.00195 * 22 21 19 39 39 H 1.08997 * 109.46771 * 329.99375 * 22 21 19 40 40 H 1.09005 * 109.46725 * 277.36368 * 24 23 21 41 41 H 0.96696 * 113.99982 * 59.99865 * 25 24 23 42 42 H 1.48494 * 110.00262 * 180.02562 * 26 24 23 43 43 H 1.48504 * 109.99640 * 301.31525 * 26 24 23 44 44 H 1.08997 * 113.61982 * 203.66679 * 27 3 2 45 45 H 1.09005 * 113.61659 * 334.57270 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7414 2.0770 1.2936 5 9 0.4257 2.5526 1.2879 6 9 1.9256 1.2279 2.3900 7 9 2.6269 3.1562 1.3855 8 6 1.7096 2.1137 -1.2733 9 6 2.9801 1.4899 -1.8746 10 1 3.5714 2.1886 -2.4666 11 6 2.7299 0.1630 -2.5941 12 16 4.2648 -0.3960 -3.3827 13 8 4.5722 0.4164 -4.5074 14 8 5.2497 -0.6929 -2.4024 15 8 3.9124 -1.7497 -3.9827 16 6 3.1360 -1.6758 -5.0958 17 6 3.7167 -1.4392 -6.3331 18 6 2.9256 -1.3650 -7.4634 19 6 1.5556 -1.5259 -7.3618 20 35 0.4755 -1.4246 -8.9106 21 6 0.9744 -1.7620 -6.1285 22 6 -0.5185 -1.9374 -6.0208 23 6 1.7622 -1.8431 -4.9969 24 6 1.1293 -2.1065 -3.6548 25 8 0.0499 -3.0299 -3.8101 26 14 2.4010 -2.8263 -2.4991 27 6 3.4860 1.3227 -0.4321 28 1 -0.3633 -1.0275 -0.0114 29 1 -0.3633 0.5040 0.8956 30 1 -0.3633 0.5236 -0.8843 31 1 0.7927 1.8088 -1.7776 32 1 1.7775 3.1924 -1.1320 33 1 2.3987 -0.5844 -1.8731 34 1 1.9605 0.3010 -3.3538 35 1 4.7864 -1.3140 -6.4130 36 1 3.3773 -1.1804 -8.4269 37 1 -0.7698 -2.9916 -6.1373 38 1 -0.8558 -1.5892 -5.0445 39 1 -1.0097 -1.3582 -6.8026 40 1 0.7511 -1.1713 -3.2418 41 1 0.3139 -3.8860 -4.1740 42 1 1.7893 -3.0912 -1.1722 43 1 2.9477 -4.0852 -3.0661 44 1 4.0397 2.1850 -0.0609 45 1 4.0032 0.3792 -0.2575 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16926660_17541816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:50:48 Heat of formation + Delta-G solvation = -238.026629 kcal Electronic energy + Delta-G solvation = -41702.337923 eV Core-core repulsion = 35834.637916 eV Total energy + Delta-G solvation = -5867.700007 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 475.009 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -51.20146 -48.73233 -48.67683 -42.96335 -41.43896 -40.15307 -38.54251 -38.00622 -37.42168 -37.27129 -33.95895 -33.50284 -31.99617 -30.78585 -28.67319 -28.27829 -27.80524 -26.77038 -26.71267 -24.42913 -23.63569 -22.83356 -21.61772 -20.67530 -19.96268 -19.54402 -19.51441 -19.32594 -19.12113 -18.71284 -18.48019 -17.39304 -17.20416 -16.85366 -16.60083 -16.46951 -16.40290 -15.85760 -15.66662 -15.60455 -15.55407 -15.28882 -15.20196 -15.10041 -14.99050 -14.85586 -14.78038 -14.71017 -14.63620 -14.32679 -14.28064 -14.10303 -13.50937 -13.47556 -13.34496 -13.25022 -13.18943 -13.16911 -13.10046 -12.94216 -12.89271 -12.38096 -12.30928 -12.26374 -12.09968 -11.99916 -11.78566 -11.39749 -11.20759 -10.85475 -10.76777 -10.04913 -9.89327 -5.15273 -1.35449 -0.45302 -0.16112 0.38967 0.66165 0.95650 1.49961 1.58652 1.73601 2.00917 2.12759 2.29943 2.60127 2.63567 2.71740 2.90512 3.02064 3.07422 3.14561 3.27157 3.35767 3.39670 3.53395 3.56332 3.73620 3.86443 3.89710 4.16044 4.23296 4.29343 4.30058 4.36621 4.42783 4.47791 4.51001 4.56914 4.59787 4.73644 4.76611 4.79779 4.80991 4.82420 4.89871 4.95082 5.11988 5.21657 5.42825 5.75381 6.28251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.346 6.346 3 C 0.032 3.968 4 C 0.432 3.568 5 F -0.183 7.183 6 F -0.190 7.190 7 F -0.175 7.175 8 C -0.127 4.127 9 C -0.088 4.088 10 H 0.136 0.864 11 C -0.636 4.636 12 S 2.568 3.432 13 O -0.947 6.947 14 O -0.934 6.934 15 O -0.638 6.638 16 C 0.056 3.944 17 C -0.092 4.092 18 C -0.066 4.066 19 C -0.087 4.087 20 Br -0.023 7.023 21 C -0.016 4.016 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.051 4.051 25 O -0.518 6.518 26 Si 0.605 3.395 27 C -0.141 4.141 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.186 0.814 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.163 0.837 41 H 0.388 0.612 42 H -0.249 1.249 43 H -0.293 1.293 44 H 0.139 0.861 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 2.936 -4.563 6.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.264 6.264 3 C -0.011 4.011 4 C 0.377 3.623 5 F -0.165 7.165 6 F -0.171 7.171 7 F -0.157 7.157 8 C -0.165 4.165 9 C -0.108 4.108 10 H 0.154 0.846 11 C -0.764 4.764 12 S 2.667 3.333 13 O -0.946 6.946 14 O -0.932 6.932 15 O -0.598 6.598 16 C 0.015 3.985 17 C -0.112 4.112 18 C -0.085 4.085 19 C -0.167 4.167 20 Br 0.064 6.936 21 C -0.019 4.019 22 C -0.180 4.180 23 C -0.120 4.120 24 C -0.163 4.163 25 O -0.326 6.326 26 Si 0.511 3.489 27 C -0.178 4.178 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.171 0.829 34 H 0.204 0.796 35 H 0.180 0.820 36 H 0.188 0.812 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.180 0.820 41 H 0.238 0.762 42 H -0.175 1.175 43 H -0.221 1.221 44 H 0.157 0.843 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.866 2.398 -4.501 6.400 hybrid contribution -0.528 -1.085 0.811 1.454 sum -4.394 1.313 -3.690 5.887 Atomic orbital electron populations 1.23352 0.78776 1.05070 1.02564 1.88061 1.22045 1.22410 1.93858 1.24186 1.00369 0.86585 0.89935 1.21527 0.74128 0.78652 0.87944 1.93182 1.37134 1.89266 1.96883 1.93188 1.94923 1.70881 1.58142 1.93175 1.68665 1.57220 1.96623 1.23696 0.99715 1.01591 0.91471 1.21775 1.00173 0.93413 0.95408 0.84596 1.30875 1.22543 1.08303 1.14706 1.06148 0.78045 0.73644 0.75469 1.93658 1.83420 1.68474 1.49012 1.93646 1.56180 1.81426 1.61997 1.85580 1.70538 1.58414 1.45313 1.18223 0.88368 1.08480 0.83454 1.21566 1.02731 0.97295 0.89654 1.21375 0.91119 0.95993 1.00037 1.22227 0.95186 1.06235 0.93100 1.96832 1.67552 1.97041 1.32216 1.19655 0.98049 0.95069 0.89090 1.21194 0.87512 1.04157 1.05107 1.20225 0.90540 1.03399 0.97824 1.24981 0.96150 0.99091 0.96076 1.86605 1.31730 1.27742 1.86490 0.94833 0.82235 0.91536 0.80280 1.23707 0.91594 1.07336 0.95127 0.87664 0.93535 0.89864 0.86171 0.85193 0.82851 0.79637 0.81978 0.81235 0.89153 0.88164 0.90448 0.82043 0.76165 1.17531 1.22064 0.84334 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 10.40 113.37 1.18 1.19 16 2 O -0.35 0.66 8.35 -148.98 -1.24 -0.59 16 3 C 0.03 -0.11 0.85 -10.27 -0.01 -0.12 16 4 C 0.43 0.23 2.53 71.98 0.18 0.42 16 5 F -0.18 -0.12 15.34 44.97 0.69 0.57 16 6 F -0.19 -1.05 17.09 44.97 0.77 -0.28 16 7 F -0.18 -0.07 15.82 44.97 0.71 0.64 16 8 C -0.13 1.28 6.51 31.12 0.20 1.49 16 9 C -0.09 0.76 3.84 -10.27 -0.04 0.72 16 10 H 0.14 -1.71 8.13 -2.38 -0.02 -1.73 16 11 C -0.64 4.59 3.23 71.98 0.23 4.82 16 12 S 2.57 0.99 4.40 -56.49 -0.25 0.74 16 13 O -0.95 -2.45 15.85 -118.57 -1.88 -4.33 16 14 O -0.93 -6.17 18.02 -118.57 -2.14 -8.30 16 15 O -0.64 -0.91 5.56 -61.69 -0.34 -1.25 16 16 C 0.06 -0.04 4.51 22.50 0.10 0.06 16 17 C -0.09 0.15 8.61 22.37 0.19 0.34 16 18 C -0.07 0.24 9.78 22.27 0.22 0.46 16 19 C -0.09 0.28 6.22 22.32 0.14 0.41 16 20 Br -0.02 0.07 31.77 -20.37 -0.65 -0.58 16 21 C -0.02 0.07 5.83 -19.86 -0.12 -0.05 16 22 C -0.12 0.84 7.91 71.24 0.56 1.40 16 23 C -0.12 0.42 4.78 -19.77 -0.09 0.33 16 24 C -0.05 0.25 1.73 71.24 0.12 0.38 16 25 O -0.52 2.71 9.59 -148.98 -1.43 1.28 16 26 Si 0.60 1.52 23.07 68.60 1.58 3.11 16 27 C -0.14 0.67 6.89 31.12 0.21 0.88 16 28 H 0.11 -0.68 8.14 -2.39 -0.02 -0.69 16 29 H 0.05 -0.16 6.46 -2.39 -0.02 -0.17 16 30 H 0.08 -0.92 6.63 -2.38 -0.02 -0.93 16 31 H 0.12 -1.70 6.62 -2.39 -0.02 -1.72 16 32 H 0.13 -1.62 8.07 -2.39 -0.02 -1.64 16 33 H 0.15 -0.95 2.53 -2.39 -0.01 -0.95 16 34 H 0.19 -2.72 6.22 -2.39 -0.01 -2.73 16 35 H 0.16 -0.55 7.93 -2.91 -0.02 -0.58 16 36 H 0.17 -1.30 8.06 -2.91 -0.02 -1.33 16 37 H 0.09 -0.67 7.95 -2.39 -0.02 -0.69 16 38 H 0.10 -0.79 6.24 -2.39 -0.01 -0.81 16 39 H 0.08 -0.51 6.64 -2.39 -0.02 -0.52 16 40 H 0.16 -1.83 6.10 -2.38 -0.01 -1.85 16 41 H 0.39 -3.23 8.70 -74.06 -0.64 -3.87 16 42 H -0.25 -1.63 7.11 99.48 0.71 -0.93 16 43 H -0.29 -2.94 7.11 99.48 0.71 -2.24 16 44 H 0.14 -1.03 7.00 -2.39 -0.02 -1.05 16 45 H 0.10 -0.28 8.03 -2.38 -0.02 -0.30 16 Total: 0.00 -20.39 382.15 -0.59 -20.97 By element: Atomic # 1 Polarization: -25.22 SS G_CDS: 0.50 Total: -24.73 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 3.09 Total: 12.74 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -7.03 Total: -13.18 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 2.17 Total: 0.94 kcal Atomic # 14 Polarization: 1.52 SS G_CDS: 1.58 Total: 3.11 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -0.25 Total: 0.74 kcal Atomic # 35 Polarization: 0.07 SS G_CDS: -0.65 Total: -0.58 kcal Total: -20.39 -0.59 -20.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16926660_17541816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.052 kcal (2) G-P(sol) polarization free energy of solvation -20.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds