Wall clock time and date at job start Mon Mar 8 2021 11:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38325 * 119.97286 * 2 1 4 4 Br 1.89096 * 119.95887 * 359.97438 * 3 2 1 5 5 C 1.38368 * 120.08675 * 179.97438 * 3 2 1 6 6 C 1.38117 * 120.04758 * 0.02562 * 5 3 2 7 7 C 1.38745 * 119.95392 * 0.02562 * 6 5 3 8 8 O 1.35918 * 120.04545 * 179.97438 * 7 6 5 9 9 S 1.52204 * 113.99782 * 82.84438 * 8 7 6 10 10 O 1.42098 * 106.40220 * 187.46759 * 9 8 7 11 11 O 1.42104 * 106.40090 * 320.38536 * 9 8 7 12 12 C 1.76202 * 107.21680 * 73.92433 * 9 8 7 13 13 C 1.38230 * 120.00219 * 262.31548 * 12 9 8 14 14 C 1.38234 * 120.00136 * 180.02562 * 13 12 9 15 15 C 1.38240 * 119.99779 * 359.97438 * 14 13 12 16 Xx 1.80998 * 119.99968 * 179.97438 * 15 14 13 17 16 F 8.21381 * 67.03472 * 135.86340 * 2 1 3 18 17 F 1.60999 * 90.00204 * 134.99835 * 16 15 14 19 18 F 1.61005 * 89.99960 * 315.00249 * 16 15 14 20 19 F 1.60996 * 90.00314 * 225.00115 * 16 15 14 21 20 F 1.61000 * 90.00005 * 45.00043 * 16 15 14 22 21 C 1.38228 * 120.00166 * 359.95853 * 15 14 13 23 22 C 1.38236 * 119.99963 * 359.85766 * 22 15 14 24 23 C 1.38160 * 119.97778 * 179.72114 * 2 1 3 25 24 C 1.50695 * 120.02331 * 0.28099 * 24 2 1 26 25 O 1.42905 * 109.46828 * 316.26379 * 25 24 2 27 26 Si 1.86300 * 109.47586 * 76.26179 * 25 24 2 28 27 H 1.48497 * 109.46801 * 65.49918 * 27 25 24 29 28 H 1.48499 * 109.47401 * 185.49824 * 27 25 24 30 29 H 1.48500 * 109.46834 * 305.50092 * 27 25 24 31 30 H 1.08995 * 109.47158 * 265.48370 * 1 2 3 32 31 H 1.09003 * 109.46924 * 25.48471 * 1 2 3 33 32 H 1.09000 * 109.47110 * 145.48338 * 1 2 3 34 33 H 1.07998 * 119.97419 * 179.97438 * 5 3 2 35 34 H 1.08000 * 120.01953 * 179.97438 * 6 5 3 36 35 H 1.08004 * 119.99922 * 359.97438 * 13 12 9 37 36 H 1.07994 * 120.00399 * 179.97438 * 14 13 12 38 37 H 1.08003 * 120.00287 * 180.02562 * 22 15 14 39 38 H 1.08004 * 120.00065 * 180.02562 * 23 22 15 40 39 H 1.09001 * 109.47129 * 196.26945 * 25 24 2 41 40 H 0.96699 * 113.99774 * 305.37069 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1983 0.0000 4 35 1.2507 2.8347 -0.0007 5 6 3.5818 1.2010 0.0005 6 6 4.2757 0.0068 0.0005 7 6 3.5844 -1.1961 -0.0005 8 8 4.2654 -2.3724 -0.0011 9 16 4.7250 -2.8222 1.3785 10 8 5.5579 -3.9553 1.1743 11 8 5.1577 -1.6520 2.0586 12 6 3.3007 -3.4004 2.2398 13 6 2.6428 -2.5672 3.1251 14 6 1.5257 -3.0210 3.8012 15 6 1.0663 -4.3078 3.5916 16 9 -1.6978 -5.4277 5.2665 17 9 -0.9662 -5.5352 3.1113 18 9 0.1742 -4.2691 5.8435 19 9 0.3624 -6.2849 4.8015 20 9 -1.1544 -3.5195 4.1532 21 6 1.7234 -5.1405 2.7053 22 6 2.8382 -4.6855 2.0263 23 6 2.1974 -1.1968 0.0058 24 6 1.4439 -2.5018 0.0058 25 8 0.3588 -2.4253 0.9325 26 14 0.7794 -2.8353 -1.7024 27 1 1.9106 -3.0468 -2.6410 28 1 -0.0734 -4.0507 -1.6733 29 1 -0.0286 -1.6743 -2.1546 30 1 -0.3633 -0.0809 1.0244 31 1 -0.3633 0.9277 -0.4422 32 1 -0.3633 -0.8468 -0.5823 33 1 4.1195 2.1376 0.0001 34 1 5.3557 0.0095 0.0005 35 1 3.0020 -1.5619 3.2891 36 1 1.0119 -2.3702 4.4931 37 1 1.3642 -6.1458 2.5412 38 1 3.3514 -5.3360 1.3335 39 1 2.1154 -3.3090 0.2985 40 1 0.6231 -2.1726 1.8276 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16926660_8643202.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:54:17 Heat of formation + Delta-G solvation = 313.254434 kcal Electronic energy + Delta-G solvation = -41570.377986 eV Core-core repulsion = 35275.550919 eV Total energy + Delta-G solvation = -6294.827067 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 479.967 amu Computer time = 14.31 seconds Orbital eigenvalues (eV) -44.43396 -44.31913 -44.19191 -44.12941 -43.65487 -42.84600 -41.52304 -40.09209 -38.85699 -37.95305 -37.48984 -34.03087 -33.59057 -33.32305 -33.08693 -30.83159 -28.54149 -26.90064 -24.93745 -24.82663 -24.36868 -22.74654 -21.67080 -20.30776 -19.61600 -19.04992 -18.82766 -17.93355 -17.60973 -16.99924 -16.77490 -16.70521 -16.55061 -16.19276 -15.70997 -15.58950 -15.49160 -15.19816 -15.18325 -14.91579 -14.79851 -14.70304 -14.60491 -14.52198 -14.45684 -14.29296 -14.20471 -14.17879 -14.04783 -13.96021 -13.74710 -13.64850 -13.63957 -13.60842 -13.48278 -13.33281 -13.25946 -13.19824 -12.89367 -12.81600 -12.36884 -12.32458 -12.17117 -11.97208 -11.93420 -11.87337 -11.56834 -11.44382 -11.28923 -11.16541 -10.99113 -10.01528 -9.90446 -5.30896 -4.85130 -3.51801 -1.67874 -1.38346 -0.86843 -0.43653 -0.19897 0.42280 0.77683 0.95353 1.27378 1.40548 1.44290 1.83010 2.02118 2.10103 2.30928 2.50440 2.60185 2.99207 3.03248 3.14927 3.20643 3.44872 3.57587 3.60166 3.65495 3.74787 3.82433 3.86407 4.00387 4.13213 4.24051 4.30620 4.41655 4.48918 4.54520 4.72094 4.77536 4.81639 5.06032 5.17860 5.37089 6.17766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.023 4.023 3 C -0.081 4.081 4 Br -0.026 7.026 5 C -0.059 4.059 6 C -0.088 4.088 7 C 0.071 3.929 8 O -0.643 6.643 9 S 2.693 3.307 10 O -0.924 6.924 11 O -0.934 6.934 12 C -0.709 4.709 13 C 0.047 3.953 14 C -0.135 4.135 15 C 0.401 3.599 16 F -0.202 7.202 17 F -0.152 7.152 18 F -0.171 7.171 19 F -0.171 7.171 20 F -0.149 7.149 21 C -0.126 4.126 22 C 0.055 3.945 23 C -0.122 4.122 24 C -0.102 4.102 25 O -0.527 6.527 26 Si 0.996 3.004 27 H -0.238 1.238 28 H -0.250 1.250 29 H -0.240 1.240 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.229 0.771 36 H 0.215 0.785 37 H 0.209 0.791 38 H 0.231 0.769 39 H 0.089 0.911 40 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 6.297 -6.525 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.161 4.161 4 Br 0.061 6.939 5 C -0.079 4.079 6 C -0.109 4.109 7 C 0.029 3.971 8 O -0.602 6.602 9 S 2.782 3.218 10 O -0.922 6.922 11 O -0.933 6.933 12 C -0.789 4.789 13 C 0.030 3.970 14 C -0.153 4.153 15 C 0.396 3.604 16 F -0.202 7.202 17 F -0.151 7.151 18 F -0.169 7.169 19 F -0.170 7.170 20 F -0.147 7.147 21 C -0.144 4.144 22 C 0.037 3.963 23 C -0.125 4.125 24 C -0.209 4.209 25 O -0.334 6.334 26 Si 0.813 3.187 27 H -0.161 1.161 28 H -0.174 1.174 29 H -0.163 1.163 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.246 0.754 36 H 0.232 0.768 37 H 0.226 0.774 38 H 0.247 0.753 39 H 0.106 0.894 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.531 6.589 -8.137 12.897 hybrid contribution -1.131 -1.180 2.257 2.787 sum 6.400 5.409 -5.880 10.237 Atomic orbital electron populations 1.21387 0.88430 1.04474 1.05297 1.19552 0.97652 0.89545 0.95818 1.22194 0.95541 0.92208 1.06206 1.96866 1.75244 1.24672 1.97166 1.21394 0.91419 0.99797 0.95266 1.21635 1.02851 0.89455 0.96921 1.17971 0.89043 0.81129 1.08990 1.85775 1.74692 1.44040 1.55653 1.02503 0.72989 0.74108 0.72249 1.93708 1.62495 1.52270 1.83765 1.93691 1.78699 1.47144 1.73744 1.32122 1.25187 1.05356 1.16276 1.21791 0.86050 1.01760 0.87415 1.22404 0.96797 0.92378 1.03708 1.27939 0.56339 0.90790 0.85370 2.00000 1.74837 1.90916 1.54435 1.99922 1.89950 1.96814 1.28373 1.99922 1.58419 1.99856 1.58737 1.99922 1.53570 1.81083 1.82399 1.99920 1.86936 1.68063 1.59803 1.22356 0.93412 1.05368 0.93224 1.21758 0.87815 0.93101 0.93607 1.20130 0.91456 0.96576 1.04363 1.25432 0.93386 0.94818 1.07257 1.86916 1.31880 1.92199 1.22402 0.84735 0.80847 0.81755 0.71390 1.16119 1.17377 1.16330 0.88011 0.90258 0.89821 0.80941 0.80933 0.75436 0.76805 0.77383 0.75306 0.89371 0.78525 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 205. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.92 7.94 71.24 0.57 1.49 16 2 C -0.02 0.17 5.60 -19.86 -0.11 0.06 16 3 C -0.08 0.59 6.22 22.32 0.14 0.73 16 4 Br -0.03 0.14 31.69 -20.37 -0.65 -0.51 16 5 C -0.06 0.58 9.78 22.27 0.22 0.80 16 6 C -0.09 0.86 8.71 22.36 0.19 1.05 16 7 C 0.07 -0.61 4.92 22.50 0.11 -0.50 16 8 O -0.64 5.87 9.17 -61.91 -0.57 5.30 16 9 S 2.69 -24.72 5.40 -56.49 -0.31 -25.03 16 10 O -0.92 3.17 17.50 -118.78 -2.08 1.09 16 11 O -0.93 6.78 15.10 -118.78 -1.79 4.98 16 12 C -0.71 9.56 3.52 22.27 0.08 9.64 16 13 C 0.05 -0.74 8.21 22.27 0.18 -0.56 16 14 C -0.14 1.57 6.84 22.27 0.15 1.72 16 15 C 0.40 -1.86 4.80 22.27 0.11 -1.75 16 16 F -0.20 -4.59 16.67 44.97 0.75 -3.84 16 17 F -0.15 -1.73 15.32 44.97 0.69 -1.04 16 18 F -0.17 -2.00 15.31 44.97 0.69 -1.31 16 19 F -0.17 -2.11 15.32 44.97 0.69 -1.42 16 20 F -0.15 -1.49 15.30 44.97 0.69 -0.80 16 21 C -0.13 1.30 8.62 22.27 0.19 1.50 16 22 C 0.05 -0.82 8.03 22.27 0.18 -0.64 16 23 C -0.12 1.01 4.11 -19.77 -0.08 0.93 16 24 C -0.10 0.85 1.74 71.23 0.12 0.97 16 25 O -0.53 4.15 10.12 -148.98 -1.51 2.64 16 26 Si 1.00 -4.64 26.62 68.60 1.83 -2.81 16 27 H -0.24 1.09 7.11 99.48 0.71 1.79 16 28 H -0.25 0.57 7.11 99.48 0.71 1.27 16 29 H -0.24 0.84 6.07 99.48 0.60 1.44 16 30 H 0.10 -0.89 7.81 -2.39 -0.02 -0.91 16 31 H 0.08 -0.47 6.43 -2.39 -0.02 -0.48 16 32 H 0.08 -0.45 3.75 -2.39 -0.01 -0.46 16 33 H 0.17 -2.34 8.06 -2.91 -0.02 -2.36 16 34 H 0.17 -2.25 8.04 -2.91 -0.02 -2.27 16 35 H 0.23 -4.93 7.47 -2.91 -0.02 -4.95 16 36 H 0.22 -3.01 7.40 -2.91 -0.02 -3.03 16 37 H 0.21 -2.47 7.40 -2.91 -0.02 -2.50 16 38 H 0.23 -4.97 7.81 -2.91 -0.02 -4.99 16 39 H 0.09 -1.15 3.55 -2.39 -0.01 -1.16 16 40 H 0.36 -4.49 5.51 -74.06 -0.41 -4.90 16 Total: 0.00 -32.73 376.05 1.91 -30.82 By element: Atomic # 1 Polarization: -24.92 SS G_CDS: 1.42 Total: -23.50 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 2.05 Total: 15.43 kcal Atomic # 8 Polarization: 19.96 SS G_CDS: -5.95 Total: 14.02 kcal Atomic # 9 Polarization: -11.93 SS G_CDS: 3.50 Total: -8.42 kcal Atomic # 14 Polarization: -4.64 SS G_CDS: 1.83 Total: -2.81 kcal Atomic # 16 Polarization: -24.72 SS G_CDS: -0.31 Total: -25.03 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -0.65 Total: -0.51 kcal Total: -32.73 1.91 -30.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16926660_8643202.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 344.078 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 311.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 313.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.32 seconds