Wall clock time and date at job start Mon Mar 8 2021 10:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99574 * 2 1 4 4 O 1.20825 * 120.00427 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99502 * 179.97438 * 3 2 1 6 6 H 1.08995 * 112.85104 * 311.19972 * 5 3 2 7 7 C 1.53776 * 113.69024 * 82.47041 * 5 3 2 8 8 C 1.53781 * 87.08355 * 139.98865 * 7 5 3 9 9 H 1.09002 * 113.68949 * 89.12597 * 8 7 5 10 10 S 1.81403 * 113.61408 * 220.01815 * 8 7 5 11 11 O 1.42106 * 110.54033 * 164.85993 * 10 8 7 12 12 O 1.42096 * 110.54170 * 28.11192 * 10 8 7 13 13 O 1.52195 * 104.44843 * 276.48330 * 10 8 7 14 14 C 1.35903 * 114.00131 * 76.12085 * 13 10 8 15 15 C 1.38709 * 120.05450 * 90.04834 * 14 13 10 16 16 C 1.50694 * 120.03209 * 0.25647 * 15 14 13 17 17 O 1.42901 * 109.47033 * 73.31311 * 16 15 14 18 18 Si 1.86300 * 109.47368 * 193.31322 * 16 15 14 19 19 C 1.38170 * 119.94405 * 180.30023 * 15 14 13 20 20 C 1.38243 * 120.05357 * 359.97438 * 19 15 14 21 21 C 1.38297 * 120.11388 * 359.97438 * 20 19 15 22 22 C 1.50701 * 119.97225 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.47200 * 244.45996 * 22 21 20 24 24 C 1.52997 * 109.47306 * 4.46774 * 22 21 20 25 25 C 1.53008 * 109.46624 * 124.46232 * 22 21 20 26 26 C 1.38116 * 120.05203 * 0.03153 * 21 20 19 27 27 C 1.53780 * 87.07907 * 334.56673 * 8 7 5 28 28 H 1.08999 * 109.47445 * 299.99874 * 1 2 3 29 29 H 1.09005 * 109.47070 * 60.00037 * 1 2 3 30 30 H 1.09005 * 109.46955 * 179.97438 * 1 2 3 31 31 H 1.09007 * 113.61892 * 25.44053 * 7 5 3 32 32 H 1.09004 * 113.61761 * 254.53912 * 7 5 3 33 33 H 1.09003 * 109.47370 * 313.31716 * 16 15 14 34 34 H 0.96708 * 113.99891 * 65.40103 * 17 16 15 35 35 H 1.48496 * 110.00021 * 58.68535 * 18 16 15 36 36 H 1.48507 * 109.99828 * 180.02562 * 18 16 15 37 37 H 1.07997 * 119.97371 * 179.97438 * 19 15 14 38 38 H 1.07998 * 119.94702 * 179.97438 * 20 19 15 39 39 H 1.09000 * 109.46821 * 52.62647 * 23 22 21 40 40 H 1.08996 * 109.46871 * 172.62424 * 23 22 21 41 41 H 1.09001 * 109.46961 * 292.62396 * 23 22 21 42 42 H 1.09002 * 109.47577 * 59.99098 * 24 22 21 43 43 H 1.09000 * 109.47076 * 179.97438 * 24 22 21 44 44 H 1.09007 * 109.46645 * 299.99538 * 24 22 21 45 45 H 1.09006 * 109.46724 * 60.00115 * 25 22 21 46 46 H 1.09000 * 109.46860 * 179.97438 * 25 22 21 47 47 H 1.09002 * 109.46849 * 300.00039 * 25 22 21 48 48 H 1.08002 * 120.02768 * 179.97438 * 26 21 20 49 49 H 1.08999 * 113.61315 * 139.98538 * 27 8 7 50 50 H 1.09000 * 113.61338 * 270.88109 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0233 0.6365 0.7566 7 6 4.1935 1.1227 -1.3952 8 6 5.1827 2.2263 -0.9848 9 1 6.0822 1.8493 -0.4981 10 16 5.5429 3.4094 -2.3119 11 8 6.1670 4.5730 -1.7866 12 8 4.4415 3.5083 -3.2042 13 8 6.6331 2.7375 -3.1341 14 6 6.1824 1.7402 -3.9399 15 6 5.7760 2.0239 -5.2354 16 6 5.8391 3.4378 -5.7531 17 8 7.2008 3.7947 -5.9988 18 14 4.8687 3.5626 -7.3385 19 6 5.3123 1.0093 -6.0506 20 6 5.2538 -0.2879 -5.5762 21 6 5.6594 -0.5736 -4.2853 22 6 5.5937 -1.9887 -3.7713 23 6 4.5866 -2.0676 -2.6221 24 6 5.1530 -2.9217 -4.9009 25 6 6.9752 -2.4133 -3.2689 26 6 6.1236 0.4372 -3.4665 27 6 4.1076 2.7143 0.0006 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5272 1.4135 -2.2075 32 1 4.6642 0.1533 -1.5590 33 1 5.4139 4.1152 -5.0125 34 1 7.6189 3.2867 -6.7076 35 1 3.4579 3.1634 -7.1032 36 1 4.9237 4.9521 -7.8596 37 1 4.9953 1.2297 -7.0592 38 1 4.8907 -1.0796 -6.2148 39 1 3.6355 -1.6426 -2.9428 40 1 4.4413 -3.1097 -2.3374 41 1 4.9656 -1.5069 -1.7677 42 1 5.8704 -2.8654 -5.7196 43 1 5.1059 -3.9453 -4.5291 44 1 4.1688 -2.6191 -5.2588 45 1 7.2892 -1.7485 -2.4641 46 1 6.9276 -3.4367 -2.8966 47 1 7.6926 -2.3570 -4.0875 48 1 6.4399 0.2138 -2.4583 49 1 4.5090 3.0299 0.9636 50 1 3.4179 3.4402 -0.4300 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16982352_13206342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:55:06 Heat of formation + Delta-G solvation = -158.852766 kcal Electronic energy + Delta-G solvation = -37187.198639 eV Core-core repulsion = 32468.665846 eV Total energy + Delta-G solvation = -4718.532793 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.56629 -41.94458 -40.30448 -39.68240 -38.44050 -38.18456 -37.39029 -37.22991 -36.72035 -32.38356 -31.66734 -29.97329 -28.62957 -28.45163 -27.85987 -27.23922 -26.93430 -24.51834 -23.37770 -23.35900 -22.11754 -20.99309 -20.38445 -19.60614 -19.03548 -18.76851 -18.39431 -18.02693 -17.78820 -17.60128 -17.20224 -16.84939 -16.56733 -16.32852 -15.80331 -15.77414 -15.41594 -15.35052 -14.95441 -14.78314 -14.68532 -14.56141 -14.27955 -14.14551 -14.01752 -13.88929 -13.69791 -13.58064 -13.54516 -13.26102 -13.21739 -13.15819 -13.14288 -13.04373 -12.96654 -12.85686 -12.77782 -12.27757 -12.11617 -12.06345 -11.90279 -11.87565 -11.84857 -11.75924 -11.60758 -11.31833 -10.50093 -10.18264 -9.89674 -5.07469 -1.14133 -0.08382 -0.07694 0.95821 1.04724 1.23296 1.57535 1.66767 2.02135 2.21191 2.29904 2.53076 2.75734 3.00309 3.13722 3.17537 3.33640 3.41602 3.48574 3.54758 3.60564 3.75910 3.80708 3.85496 3.93219 3.98726 4.01595 4.03350 4.09902 4.16191 4.17874 4.19277 4.29725 4.42906 4.44584 4.48525 4.51732 4.53744 4.59970 4.64373 4.70960 4.74533 4.75916 4.78312 4.83143 4.91643 4.99533 5.04118 5.15647 5.16737 5.27595 5.29981 5.57635 6.57602 6.61408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.095 4.095 6 H 0.138 0.862 7 C -0.105 4.105 8 C -0.651 4.651 9 H 0.166 0.834 10 S 2.595 3.405 11 O -0.918 6.918 12 O -0.945 6.945 13 O -0.650 6.650 14 C 0.093 3.907 15 C -0.090 4.090 16 C -0.090 4.090 17 O -0.530 6.530 18 Si 0.692 3.308 19 C -0.096 4.096 20 C -0.095 4.095 21 C -0.050 4.050 22 C -0.031 4.031 23 C -0.148 4.148 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.124 4.124 27 C -0.087 4.087 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.377 0.623 35 H -0.248 1.248 36 H -0.249 1.249 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.141 0.859 49 H 0.106 0.894 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -10.558 -1.753 10.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.114 4.114 6 H 0.156 0.844 7 C -0.143 4.143 8 C -0.758 4.758 9 H 0.184 0.816 10 S 2.690 3.310 11 O -0.916 6.916 12 O -0.943 6.943 13 O -0.609 6.609 14 C 0.051 3.949 15 C -0.093 4.093 16 C -0.200 4.200 17 O -0.335 6.335 18 Si 0.592 3.408 19 C -0.113 4.113 20 C -0.114 4.114 21 C -0.050 4.050 22 C -0.031 4.031 23 C -0.204 4.204 24 C -0.205 4.205 25 C -0.201 4.201 26 C -0.144 4.144 27 C -0.125 4.125 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.224 0.776 35 H -0.172 1.172 36 H -0.173 1.173 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.159 0.841 49 H 0.125 0.875 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.806 -8.776 -2.026 9.043 hybrid contribution -0.063 -0.101 1.462 1.466 sum -0.869 -8.878 -0.565 8.938 Atomic orbital electron populations 1.23359 0.75711 1.04115 1.02893 1.86499 1.23885 1.32966 1.83779 1.23445 0.91464 0.81687 0.72489 1.90714 1.66817 1.36396 1.44537 1.22426 0.87928 1.00133 1.00961 0.84434 1.23065 0.95803 0.98859 0.96549 1.32270 1.08142 1.16254 1.19084 0.81590 1.05643 0.73583 0.75819 0.75948 1.93668 1.74112 1.43430 1.80360 1.93633 1.55933 1.85812 1.58970 1.85730 1.59016 1.55124 1.61035 1.17730 1.02299 0.84926 0.89943 1.20494 0.98247 0.97552 0.92966 1.25369 0.90707 0.93224 1.10675 1.86608 1.23740 1.63645 1.59491 0.95476 0.80571 0.84747 0.79989 1.20968 0.98887 0.92146 0.99324 1.21417 0.97931 0.96656 0.95355 1.19742 0.97023 0.94790 0.93480 1.19587 0.96883 0.90183 0.96413 1.22070 0.98647 1.02874 0.96851 1.22009 1.01631 0.99157 0.97702 1.21961 0.94922 1.01790 1.01396 1.21185 1.01141 0.90420 1.01674 1.22616 0.93929 0.95877 1.00078 0.91626 0.91619 0.87709 0.87062 0.87203 0.86086 0.77589 1.17216 1.17335 0.83892 0.83706 0.91835 0.91364 0.92191 0.91824 0.91706 0.91851 0.92377 0.91657 0.91984 0.84111 0.87522 0.87348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.19 10.57 -39.26 -0.41 -0.60 16 3 C 0.47 0.69 7.49 36.01 0.27 0.96 16 4 O -0.50 -2.35 15.65 -18.75 -0.29 -2.64 16 5 C -0.09 0.14 4.26 -90.96 -0.39 -0.24 16 6 H 0.14 -0.59 8.14 -51.93 -0.42 -1.01 16 7 C -0.11 0.19 5.36 -25.92 -0.14 0.05 16 8 C -0.65 0.77 3.81 -25.92 -0.10 0.67 16 9 H 0.17 -0.73 8.14 -51.93 -0.42 -1.15 16 10 S 2.59 8.80 4.93 -107.50 -0.53 8.27 16 11 O -0.92 -6.53 18.09 -67.04 -1.21 -7.74 16 12 O -0.95 -4.67 13.43 -67.04 -0.90 -5.57 16 13 O -0.65 -2.10 9.48 -51.76 -0.49 -2.59 16 14 C 0.09 0.15 4.66 -39.22 -0.18 -0.03 16 15 C -0.09 -0.13 4.71 -104.48 -0.49 -0.62 16 16 C -0.09 -0.24 2.24 36.00 0.08 -0.16 16 17 O -0.53 -1.34 12.94 -35.23 -0.46 -1.80 16 18 Si 0.69 0.19 29.81 -169.99 -5.07 -4.88 16 19 C -0.10 0.14 8.66 -39.60 -0.34 -0.20 16 20 C -0.10 0.24 8.98 -39.56 -0.36 -0.11 16 21 C -0.05 0.11 4.75 -104.64 -0.50 -0.38 16 22 C -0.03 0.11 0.85 -155.66 -0.13 -0.02 16 23 C -0.15 0.58 7.65 37.16 0.28 0.86 16 24 C -0.15 0.62 7.14 37.16 0.27 0.88 16 25 C -0.14 0.51 8.23 37.16 0.31 0.82 16 26 C -0.12 0.15 5.80 -39.43 -0.23 -0.08 16 27 C -0.09 0.05 6.99 -25.92 -0.18 -0.13 16 28 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 29 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 30 H 0.10 -0.38 8.14 -51.93 -0.42 -0.80 16 31 H 0.11 -0.07 7.36 -51.92 -0.38 -0.45 16 32 H 0.11 -0.44 3.25 -51.93 -0.17 -0.61 16 33 H 0.12 0.63 5.54 -51.93 -0.29 0.34 16 34 H 0.38 -0.96 8.60 45.56 0.39 -0.57 16 35 H -0.25 -0.61 7.11 56.52 0.40 -0.20 16 36 H -0.25 -0.83 7.11 56.52 0.40 -0.43 16 37 H 0.14 -0.59 5.08 -52.49 -0.27 -0.85 16 38 H 0.15 -0.69 5.90 -52.49 -0.31 -1.00 16 39 H 0.06 -0.22 8.13 -51.93 -0.42 -0.64 16 40 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 41 H 0.06 -0.28 5.72 -51.93 -0.30 -0.57 16 42 H 0.06 -0.28 7.72 -51.93 -0.40 -0.68 16 43 H 0.06 -0.27 8.14 -51.93 -0.42 -0.69 16 44 H 0.06 -0.28 7.30 -51.93 -0.38 -0.66 16 45 H 0.06 -0.22 7.15 -51.93 -0.37 -0.59 16 46 H 0.06 -0.25 8.14 -51.93 -0.42 -0.67 16 47 H 0.06 -0.19 8.14 -51.93 -0.42 -0.61 16 48 H 0.14 -0.49 6.00 -52.49 -0.31 -0.80 16 49 H 0.11 -0.26 8.14 -51.93 -0.42 -0.68 16 50 H 0.11 0.09 7.40 -51.93 -0.38 -0.29 16 LS Contribution 397.77 15.07 5.99 5.99 Total: 0.00 -12.40 397.77 -11.15 -23.55 By element: Atomic # 1 Polarization: -8.27 SS G_CDS: -7.02 Total: -15.29 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.77 Total: 3.30 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -3.77 Total: -20.94 kcal Atomic # 14 Polarization: 0.19 SS G_CDS: -5.07 Total: -4.88 kcal Atomic # 16 Polarization: 8.80 SS G_CDS: -0.53 Total: 8.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -12.40 -11.15 -23.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16982352_13206342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.305 kcal (2) G-P(sol) polarization free energy of solvation -12.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds