Wall clock time and date at job start Mon Mar 8 2021 10:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34230 * 116.99574 * 2 1 4 4 O 1.20825 * 120.00427 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99502 * 179.97438 * 3 2 1 6 6 H 1.08995 * 112.85104 * 311.19972 * 5 3 2 7 7 C 1.53776 * 113.69024 * 82.47041 * 5 3 2 8 8 C 1.53781 * 87.08355 * 139.98865 * 7 5 3 9 9 H 1.09002 * 113.68949 * 89.12597 * 8 7 5 10 10 S 1.81403 * 113.61408 * 220.01815 * 8 7 5 11 11 O 1.42106 * 110.54033 * 164.85993 * 10 8 7 12 12 O 1.42096 * 110.54170 * 28.11192 * 10 8 7 13 13 O 1.52195 * 104.44843 * 276.48330 * 10 8 7 14 14 C 1.35903 * 114.00131 * 76.12085 * 13 10 8 15 15 C 1.38709 * 120.05450 * 90.04834 * 14 13 10 16 16 C 1.50694 * 120.03209 * 0.25647 * 15 14 13 17 17 O 1.42901 * 109.47033 * 73.31311 * 16 15 14 18 18 Si 1.86300 * 109.47368 * 193.31322 * 16 15 14 19 19 C 1.38170 * 119.94405 * 180.30023 * 15 14 13 20 20 C 1.38243 * 120.05357 * 359.97438 * 19 15 14 21 21 C 1.38297 * 120.11388 * 359.97438 * 20 19 15 22 22 C 1.50701 * 119.97225 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.47200 * 244.45996 * 22 21 20 24 24 C 1.52997 * 109.47306 * 4.46774 * 22 21 20 25 25 C 1.53008 * 109.46624 * 124.46232 * 22 21 20 26 26 C 1.38116 * 120.05203 * 0.03153 * 21 20 19 27 27 C 1.53780 * 87.07907 * 334.56673 * 8 7 5 28 28 H 1.08999 * 109.47445 * 299.99874 * 1 2 3 29 29 H 1.09005 * 109.47070 * 60.00037 * 1 2 3 30 30 H 1.09005 * 109.46955 * 179.97438 * 1 2 3 31 31 H 1.09007 * 113.61892 * 25.44053 * 7 5 3 32 32 H 1.09004 * 113.61761 * 254.53912 * 7 5 3 33 33 H 1.09003 * 109.47370 * 313.31716 * 16 15 14 34 34 H 0.96708 * 113.99891 * 65.40103 * 17 16 15 35 35 H 1.48496 * 110.00021 * 58.68535 * 18 16 15 36 36 H 1.48507 * 109.99828 * 180.02562 * 18 16 15 37 37 H 1.07997 * 119.97371 * 179.97438 * 19 15 14 38 38 H 1.07998 * 119.94702 * 179.97438 * 20 19 15 39 39 H 1.09000 * 109.46821 * 52.62647 * 23 22 21 40 40 H 1.08996 * 109.46871 * 172.62424 * 23 22 21 41 41 H 1.09001 * 109.46961 * 292.62396 * 23 22 21 42 42 H 1.09002 * 109.47577 * 59.99098 * 24 22 21 43 43 H 1.09000 * 109.47076 * 179.97438 * 24 22 21 44 44 H 1.09007 * 109.46645 * 299.99538 * 24 22 21 45 45 H 1.09006 * 109.46724 * 60.00115 * 25 22 21 46 46 H 1.09000 * 109.46860 * 179.97438 * 25 22 21 47 47 H 1.09002 * 109.46849 * 300.00039 * 25 22 21 48 48 H 1.08002 * 120.02768 * 179.97438 * 26 21 20 49 49 H 1.08999 * 113.61315 * 139.98538 * 27 8 7 50 50 H 1.09000 * 113.61338 * 270.88109 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0233 0.6365 0.7566 7 6 4.1935 1.1227 -1.3952 8 6 5.1827 2.2263 -0.9848 9 1 6.0822 1.8493 -0.4981 10 16 5.5429 3.4094 -2.3119 11 8 6.1670 4.5730 -1.7866 12 8 4.4415 3.5083 -3.2042 13 8 6.6331 2.7375 -3.1341 14 6 6.1824 1.7402 -3.9399 15 6 5.7760 2.0239 -5.2354 16 6 5.8391 3.4378 -5.7531 17 8 7.2008 3.7947 -5.9988 18 14 4.8687 3.5626 -7.3385 19 6 5.3123 1.0093 -6.0506 20 6 5.2538 -0.2879 -5.5762 21 6 5.6594 -0.5736 -4.2853 22 6 5.5937 -1.9887 -3.7713 23 6 4.5866 -2.0676 -2.6221 24 6 5.1530 -2.9217 -4.9009 25 6 6.9752 -2.4133 -3.2689 26 6 6.1236 0.4372 -3.4665 27 6 4.1076 2.7143 0.0006 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.5272 1.4135 -2.2075 32 1 4.6642 0.1533 -1.5590 33 1 5.4139 4.1152 -5.0125 34 1 7.6189 3.2867 -6.7076 35 1 3.4579 3.1634 -7.1032 36 1 4.9237 4.9521 -7.8596 37 1 4.9953 1.2297 -7.0592 38 1 4.8907 -1.0796 -6.2148 39 1 3.6355 -1.6426 -2.9428 40 1 4.4413 -3.1097 -2.3374 41 1 4.9656 -1.5069 -1.7677 42 1 5.8704 -2.8654 -5.7196 43 1 5.1059 -3.9453 -4.5291 44 1 4.1688 -2.6191 -5.2588 45 1 7.2892 -1.7485 -2.4641 46 1 6.9276 -3.4367 -2.8966 47 1 7.6926 -2.3570 -4.0875 48 1 6.4399 0.2138 -2.4583 49 1 4.5090 3.0299 0.9636 50 1 3.4179 3.4402 -0.4300 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16982352_13206342.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:55:05 Heat of formation + Delta-G solvation = -161.610880 kcal Electronic energy + Delta-G solvation = -37187.318240 eV Core-core repulsion = 32468.665846 eV Total energy + Delta-G solvation = -4718.652394 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.142 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.56836 -41.99308 -40.20951 -39.65811 -38.63671 -38.31704 -37.51885 -37.50679 -36.63273 -32.27323 -31.56632 -29.95098 -28.31281 -28.11366 -27.79604 -27.11510 -26.94400 -24.47485 -23.40898 -23.31098 -22.08447 -20.94015 -20.38610 -19.60499 -19.15592 -18.82961 -18.46333 -18.09669 -17.73138 -17.62914 -17.21047 -16.80724 -16.57817 -16.32817 -15.90685 -15.80408 -15.22573 -15.10954 -14.89228 -14.72599 -14.59906 -14.55025 -14.36017 -14.16426 -14.05780 -13.89524 -13.71493 -13.57771 -13.52162 -13.48925 -13.36411 -13.07635 -12.91334 -12.89242 -12.81514 -12.73989 -12.46289 -12.29396 -12.09055 -11.94909 -11.90156 -11.78494 -11.73146 -11.54887 -11.41769 -11.38732 -10.61401 -10.06870 -9.80052 -5.17147 -1.27928 -0.03537 0.04472 0.85795 0.96765 1.13048 1.56267 1.61346 1.90217 2.21269 2.35645 2.44641 2.80462 3.01835 3.09310 3.28377 3.45479 3.49646 3.59221 3.65888 3.71574 3.83843 4.05337 4.11905 4.15233 4.17555 4.18344 4.23529 4.24435 4.25740 4.27040 4.31529 4.35299 4.46041 4.57928 4.67256 4.74079 4.81490 4.85132 4.87768 4.92555 4.94059 5.02063 5.08877 5.11919 5.15347 5.25311 5.25753 5.33030 5.46954 5.53200 5.58940 5.72409 6.55492 6.68006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.352 6.352 3 C 0.464 3.536 4 O -0.540 6.540 5 C -0.084 4.084 6 H 0.179 0.821 7 C -0.104 4.104 8 C -0.621 4.621 9 H 0.209 0.791 10 S 2.580 3.420 11 O -0.974 6.974 12 O -0.975 6.975 13 O -0.660 6.660 14 C 0.062 3.938 15 C -0.113 4.113 16 C -0.115 4.115 17 O -0.553 6.553 18 Si 0.805 3.195 19 C -0.098 4.098 20 C -0.089 4.089 21 C -0.048 4.048 22 C -0.026 4.026 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.146 4.146 26 C -0.122 4.122 27 C -0.103 4.103 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.397 0.603 35 H -0.275 1.275 36 H -0.296 1.296 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.165 0.835 49 H 0.129 0.871 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.314 -14.375 -1.337 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.308 3.692 4 O -0.430 6.430 5 C -0.104 4.104 6 H 0.196 0.804 7 C -0.141 4.141 8 C -0.731 4.731 9 H 0.226 0.774 10 S 2.681 3.319 11 O -0.972 6.972 12 O -0.973 6.973 13 O -0.619 6.619 14 C 0.021 3.979 15 C -0.116 4.116 16 C -0.223 4.223 17 O -0.361 6.361 18 Si 0.708 3.292 19 C -0.115 4.115 20 C -0.107 4.107 21 C -0.048 4.048 22 C -0.026 4.026 23 C -0.209 4.209 24 C -0.208 4.208 25 C -0.203 4.203 26 C -0.142 4.142 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.152 0.848 31 H 0.114 0.886 32 H 0.157 0.843 33 H 0.103 0.897 34 H 0.247 0.753 35 H -0.202 1.202 36 H -0.224 1.224 37 H 0.184 0.816 38 H 0.189 0.811 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.182 0.818 49 H 0.147 0.853 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.484 -12.592 -1.635 12.707 hybrid contribution -0.196 1.012 1.350 1.699 sum -0.680 -11.579 -0.284 11.603 Atomic orbital electron populations 1.23564 0.75032 1.05838 1.02340 1.86501 1.24646 1.32353 1.83308 1.24063 0.92617 0.81305 0.71178 1.90705 1.67953 1.37755 1.46569 1.22597 0.85992 0.99792 1.01986 0.80378 1.23165 0.95270 0.99610 0.96094 1.32120 1.09907 1.14532 1.16587 0.77382 1.05845 0.72912 0.76376 0.76753 1.93586 1.75115 1.47231 1.81256 1.93581 1.56580 1.86584 1.60574 1.85699 1.58662 1.55927 1.61640 1.18162 1.04036 0.85539 0.90195 1.20579 0.99920 0.97271 0.93830 1.25672 0.91052 0.93806 1.11740 1.86543 1.24140 1.64623 1.60778 0.94385 0.77187 0.81195 0.76403 1.21236 0.98218 0.92014 1.00008 1.21786 0.96633 0.96696 0.95628 1.20023 0.95986 0.95316 0.93466 1.19594 0.97121 0.89081 0.96827 1.22126 0.98335 1.03475 0.96972 1.22046 1.01968 0.99146 0.97622 1.21989 0.94666 1.02267 1.01372 1.21438 1.00585 0.89246 1.02950 1.22780 0.93887 0.96483 1.01032 0.92085 0.92385 0.84830 0.88646 0.84334 0.89678 0.75309 1.20174 1.22395 0.81589 0.81058 0.92187 0.90791 0.91165 0.91510 0.91459 0.91377 0.91919 0.91127 0.92598 0.81796 0.85276 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.13 16 2 O -0.35 -0.02 10.57 -51.42 -0.54 -0.56 16 3 C 0.46 1.27 7.49 71.24 0.53 1.80 16 4 O -0.54 -5.86 15.65 21.97 0.34 -5.51 16 5 C -0.08 0.39 4.26 -11.01 -0.05 0.35 16 6 H 0.18 -2.26 8.14 -2.39 -0.02 -2.28 16 7 C -0.10 0.50 5.36 31.12 0.17 0.67 16 8 C -0.62 1.80 3.81 31.12 0.12 1.92 16 9 H 0.21 -2.40 8.14 -2.39 -0.02 -2.42 16 10 S 2.58 24.23 4.93 -56.49 -0.28 23.95 16 11 O -0.97 -17.62 18.09 -118.57 -2.15 -19.76 16 12 O -0.97 -13.29 13.43 -118.57 -1.59 -14.88 16 13 O -0.66 -5.66 9.48 -61.55 -0.58 -6.25 16 14 C 0.06 0.26 4.66 22.51 0.10 0.36 16 15 C -0.11 -0.45 4.71 -19.77 -0.09 -0.54 16 16 C -0.12 -0.92 2.24 71.23 0.16 -0.76 16 17 O -0.55 -4.18 12.94 -148.98 -1.93 -6.11 16 18 Si 0.81 1.55 29.81 68.60 2.04 3.59 16 19 C -0.10 0.33 8.66 22.25 0.19 0.53 16 20 C -0.09 0.61 8.98 22.28 0.20 0.81 16 21 C -0.05 0.30 4.75 -19.88 -0.09 0.21 16 22 C -0.03 0.25 0.85 -52.93 -0.05 0.21 16 23 C -0.15 1.63 7.65 71.98 0.55 2.18 16 24 C -0.15 1.63 7.14 71.98 0.51 2.15 16 25 C -0.15 1.39 8.23 71.98 0.59 1.98 16 26 C -0.12 0.42 5.80 22.36 0.13 0.55 16 27 C -0.10 0.13 6.99 31.12 0.22 0.34 16 28 H 0.06 -0.09 8.13 -2.39 -0.02 -0.11 16 29 H 0.06 -0.05 8.13 -2.38 -0.02 -0.07 16 30 H 0.13 -1.16 8.14 -2.38 -0.02 -1.18 16 31 H 0.10 -0.07 7.36 -2.38 -0.02 -0.09 16 32 H 0.14 -1.53 3.25 -2.39 -0.01 -1.54 16 33 H 0.09 1.27 5.54 -2.39 -0.01 1.26 16 34 H 0.40 -1.42 8.60 -74.05 -0.64 -2.06 16 35 H -0.28 -1.67 7.11 99.48 0.71 -0.96 16 36 H -0.30 -2.74 7.11 99.48 0.71 -2.03 16 37 H 0.17 -1.54 5.08 -2.91 -0.01 -1.55 16 38 H 0.17 -2.12 5.90 -2.91 -0.02 -2.14 16 39 H 0.06 -0.56 8.13 -2.39 -0.02 -0.58 16 40 H 0.07 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H 0.07 -0.91 5.72 -2.39 -0.01 -0.92 16 42 H 0.07 -0.74 7.72 -2.39 -0.02 -0.76 16 43 H 0.07 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.07 -0.78 7.30 -2.38 -0.02 -0.80 16 45 H 0.06 -0.64 7.15 -2.38 -0.02 -0.66 16 46 H 0.07 -0.72 8.14 -2.39 -0.02 -0.74 16 47 H 0.05 -0.44 8.14 -2.39 -0.02 -0.46 16 48 H 0.16 -1.53 6.00 -2.91 -0.02 -1.55 16 49 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 50 H 0.08 0.35 7.40 -2.39 -0.02 0.33 16 Total: 0.00 -35.42 397.77 0.11 -35.31 By element: Atomic # 1 Polarization: -24.06 SS G_CDS: 0.39 Total: -23.67 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 4.40 Total: 13.88 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -6.45 Total: -53.07 kcal Atomic # 14 Polarization: 1.55 SS G_CDS: 2.04 Total: 3.59 kcal Atomic # 16 Polarization: 24.23 SS G_CDS: -0.28 Total: 23.95 kcal Total: -35.42 0.11 -35.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16982352_13206342.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.300 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds