Wall clock time and date at job start Mon Mar 8 2021 12:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 C 1.52999 * 109.47428 * 240.00236 * 2 1 3 5 5 C 1.50699 * 109.47265 * 119.99888 * 2 1 3 6 6 C 1.38245 * 119.97597 * 239.97553 * 5 2 1 7 7 C 1.38287 * 120.11218 * 179.70194 * 6 5 2 8 8 C 1.38128 * 120.05430 * 0.60217 * 7 6 5 9 9 C 1.50697 * 120.02884 * 179.70194 * 8 7 6 10 10 O 1.42906 * 109.46831 * 254.72696 * 9 8 7 11 11 Si 1.86300 * 109.47007 * 14.72085 * 9 8 7 12 12 H 1.48503 * 109.46942 * 60.00611 * 11 9 8 13 13 H 1.48503 * 109.47276 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47372 * 300.00074 * 11 9 8 15 15 C 1.38752 * 119.94207 * 359.42169 * 8 7 6 16 16 O 1.35901 * 120.05527 * 180.25619 * 15 8 7 17 17 S 1.52193 * 114.00168 * 90.00348 * 16 15 8 18 18 O 1.42100 * 104.28013 * 191.07250 * 17 16 15 19 19 O 1.42109 * 104.27712 * 318.92650 * 17 16 15 20 20 C 1.81398 * 104.45190 * 74.99922 * 17 16 15 21 21 C 1.52998 * 109.47260 * 179.97438 * 20 17 16 22 22 C 1.52998 * 109.47370 * 180.02562 * 21 20 17 23 23 Si 1.86298 * 109.47495 * 180.02562 * 22 21 20 24 24 C 1.86299 * 109.47393 * 59.99664 * 23 22 21 25 25 C 1.86297 * 109.47150 * 180.02562 * 23 22 21 26 26 C 1.86307 * 109.46895 * 299.99938 * 23 22 21 27 27 C 1.38169 * 119.96732 * 60.00429 * 5 2 1 28 28 H 1.09003 * 109.47067 * 299.99707 * 1 2 3 29 29 H 1.09005 * 109.47457 * 59.99679 * 1 2 3 30 30 H 1.08995 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47283 * 299.99965 * 3 2 1 33 33 H 1.09003 * 109.46937 * 60.00214 * 3 2 1 34 34 H 1.08995 * 109.47077 * 300.00012 * 4 2 1 35 35 H 1.09000 * 109.47110 * 59.99919 * 4 2 1 36 36 H 1.08997 * 109.47733 * 179.97438 * 4 2 1 37 37 H 1.08003 * 119.94146 * 0.02763 * 6 5 2 38 38 H 1.07994 * 119.97348 * 180.30214 * 7 6 5 39 39 H 1.09000 * 109.47374 * 134.72269 * 9 8 7 40 40 H 0.96693 * 114.00047 * 60.00191 * 10 9 8 41 41 H 1.08997 * 109.47189 * 299.99932 * 20 17 16 42 42 H 1.09000 * 109.47100 * 60.00120 * 20 17 16 43 43 H 1.09006 * 109.47199 * 300.00312 * 21 20 17 44 44 H 1.09000 * 109.46928 * 60.00062 * 21 20 17 45 45 H 1.09006 * 109.47137 * 300.00256 * 22 21 20 46 46 H 1.09000 * 109.47121 * 60.00085 * 22 21 20 47 47 H 1.09003 * 109.46736 * 59.99912 * 24 23 22 48 48 H 1.08990 * 109.47223 * 180.02562 * 24 23 22 49 49 H 1.09006 * 109.46938 * 300.00364 * 24 23 22 50 50 H 1.09000 * 109.47379 * 59.99686 * 25 23 22 51 51 H 1.09004 * 109.46927 * 179.97438 * 25 23 22 52 52 H 1.08997 * 109.47145 * 299.99354 * 25 23 22 53 53 H 1.09002 * 109.46865 * 59.99457 * 26 23 22 54 54 H 1.08990 * 109.47200 * 180.02562 * 26 23 22 55 55 H 1.09003 * 109.47090 * 300.00432 * 26 23 22 56 56 H 1.07992 * 120.03175 * 0.02562 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.8275 -0.0382 2.1398 7 6 3.2849 -0.6855 3.2730 8 6 2.9584 -2.0095 3.4927 9 6 3.4628 -2.7163 4.7243 10 8 4.5209 -3.6063 4.3630 11 14 4.0977 -1.4601 5.9449 12 1 2.9982 -0.5352 6.3204 13 1 4.5953 -2.1566 7.1584 14 1 5.2060 -0.6874 5.3288 15 6 2.1609 -2.6866 2.5812 16 8 1.8340 -3.9878 2.7977 17 16 0.5498 -4.1796 3.5918 18 8 0.5448 -5.5618 3.9214 19 8 0.6124 -3.1851 4.6049 20 6 -0.7738 -3.8022 2.4102 21 6 -2.1315 -3.9618 3.0971 22 6 -3.2479 -3.6441 2.1004 23 14 -4.9012 -3.8376 2.9370 24 6 -5.0069 -2.6665 4.3820 25 6 -6.2605 -3.4515 1.7231 26 6 -5.0893 -5.5895 3.5426 27 6 1.6982 -2.0332 1.4484 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 3.0875 0.9958 1.9676 38 1 3.9019 -0.1568 3.9844 39 1 2.6493 -3.2835 5.1766 40 1 5.2801 -3.1692 3.9539 41 1 -0.6635 -2.7772 2.0563 42 1 -0.7121 -4.4871 1.5645 43 1 -2.2415 -4.9870 3.4508 44 1 -2.1934 -3.2771 3.9430 45 1 -3.1381 -2.6190 1.7464 46 1 -3.1858 -4.3291 1.2548 47 1 -4.8968 -1.6415 4.0277 48 1 -5.9740 -2.7801 4.8717 49 1 -4.2115 -2.8929 5.0922 50 1 -6.1985 -4.1370 0.8779 51 1 -7.2278 -3.5652 2.2125 52 1 -6.1506 -2.4267 1.3684 53 1 -4.2939 -5.8158 4.2526 54 1 -6.0567 -5.7029 4.0316 55 1 -5.0274 -6.2748 2.6971 56 1 1.0777 -2.5582 0.7373 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16982352_14927650.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:07:20 Heat of formation + Delta-G solvation = -167.911337 kcal Electronic energy + Delta-G solvation = -34414.333602 eV Core-core repulsion = 30153.480324 eV Total energy + Delta-G solvation = -4260.853278 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 388.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.53014 -40.19516 -38.54587 -38.31857 -37.38504 -36.65849 -35.90424 -32.28799 -31.58794 -29.62057 -28.41134 -28.31674 -28.26678 -28.21836 -28.08885 -26.94956 -24.50612 -23.37667 -22.82103 -21.98305 -20.29723 -19.28140 -18.85854 -18.72664 -18.03393 -17.31930 -16.85422 -16.71268 -16.19891 -16.13975 -15.74572 -15.34862 -15.16765 -14.99917 -14.81913 -14.67861 -14.36635 -14.20334 -14.14352 -14.04264 -13.97885 -13.63270 -13.61171 -13.59372 -13.44080 -13.41799 -13.36689 -13.15941 -13.10099 -13.05767 -12.98547 -12.96530 -12.87430 -12.80138 -12.50442 -12.34419 -12.19771 -11.93131 -11.84744 -11.81970 -11.75624 -11.68198 -11.48159 -10.71741 -10.69241 -10.53183 -10.45202 -10.13712 -9.84178 -1.16489 -0.05327 -0.01421 0.94312 1.01984 1.32096 1.47394 1.85347 1.90231 1.99812 2.01631 2.29070 2.44965 2.72621 2.78499 3.24805 3.46520 3.48490 3.58270 3.61692 3.65977 3.78449 4.02911 4.09146 4.09845 4.13051 4.16253 4.24652 4.38018 4.40938 4.58564 4.68734 4.74942 4.77248 4.80530 4.80627 4.82765 4.85588 4.86522 4.87325 4.87862 4.88933 4.89275 4.93777 5.01969 5.05288 5.07081 5.07913 5.18767 5.25700 5.39301 5.43768 5.45374 5.52454 5.59345 5.65686 5.66824 5.67150 6.61445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C -0.151 4.151 4 C -0.144 4.144 5 C -0.047 4.047 6 C -0.091 4.091 7 C -0.111 4.111 8 C -0.113 4.113 9 C -0.120 4.120 10 O -0.551 6.551 11 Si 0.984 3.016 12 H -0.247 1.247 13 H -0.272 1.272 14 H -0.213 1.213 15 C 0.067 3.933 16 O -0.666 6.666 17 S 2.567 3.433 18 O -0.973 6.973 19 O -0.972 6.972 20 C -0.624 4.624 21 C -0.120 4.120 22 C -0.408 4.408 23 Si 1.068 2.932 24 C -0.472 4.472 25 C -0.461 4.461 26 C -0.477 4.477 27 C -0.127 4.127 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.168 0.832 38 H 0.155 0.845 39 H 0.099 0.901 40 H 0.391 0.609 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.070 0.930 51 H 0.064 0.936 52 H 0.072 0.928 53 H 0.064 0.936 54 H 0.066 0.934 55 H 0.070 0.930 56 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 8.106 -6.643 10.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 C -0.208 4.208 4 C -0.202 4.202 5 C -0.047 4.047 6 C -0.110 4.110 7 C -0.129 4.129 8 C -0.116 4.116 9 C -0.228 4.228 10 O -0.358 6.358 11 Si 0.803 3.197 12 H -0.171 1.171 13 H -0.197 1.197 14 H -0.135 1.135 15 C 0.026 3.974 16 O -0.625 6.625 17 S 2.669 3.331 18 O -0.971 6.971 19 O -0.970 6.970 20 C -0.755 4.755 21 C -0.159 4.159 22 C -0.494 4.494 23 Si 1.260 2.740 24 C -0.578 4.578 25 C -0.568 4.568 26 C -0.582 4.582 27 C -0.147 4.147 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.186 0.814 38 H 0.173 0.827 39 H 0.117 0.883 40 H 0.240 0.760 41 H 0.179 0.821 42 H 0.181 0.819 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.112 0.888 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.084 0.916 52 H 0.092 0.908 53 H 0.083 0.917 54 H 0.085 0.915 55 H 0.089 0.911 56 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.433 7.857 -5.252 9.558 hybrid contribution -0.261 -0.766 -0.592 1.002 sum -1.693 7.091 -5.845 9.344 Atomic orbital electron populations 1.22010 0.92600 1.02906 1.03033 1.19600 0.96538 0.95610 0.91045 1.22045 1.01720 0.93863 1.03127 1.21964 1.01331 1.00456 0.96410 1.20016 0.95864 0.92154 0.96682 1.21732 0.95091 1.02003 0.92148 1.21335 1.00243 0.92100 0.99201 1.20571 0.98581 0.95619 0.96785 1.25554 0.94049 1.02562 1.00588 1.86552 1.29279 1.36586 1.83393 0.85257 0.81261 0.76253 0.76927 1.17064 1.19700 1.13511 1.18110 1.03542 0.77626 0.98120 1.85700 1.60836 1.33902 1.82032 1.06167 0.76121 0.73991 0.76797 1.93593 1.85738 1.34776 1.82981 1.93580 1.84584 1.61030 1.57802 1.30780 1.12973 1.14916 1.16847 1.21224 0.90957 1.03978 0.99692 1.26222 1.11855 1.06507 1.04854 0.78320 0.65451 0.64846 0.65403 1.26412 1.04322 1.11864 1.15237 1.26242 1.13347 1.05443 1.11732 1.26473 1.04409 1.20956 1.06380 1.21437 1.02061 0.95632 0.95530 0.92034 0.91032 0.91690 0.91592 0.91369 0.91390 0.92198 0.91084 0.92622 0.81416 0.82726 0.88320 0.75979 0.82097 0.81853 0.90009 0.89382 0.88435 0.88826 0.90778 0.91544 0.91558 0.91077 0.91640 0.90846 0.91660 0.91524 0.91071 0.82000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.24 8.29 71.98 0.60 1.84 16 2 C -0.03 0.20 0.85 -52.93 -0.05 0.16 16 3 C -0.15 1.31 7.13 71.98 0.51 1.83 16 4 C -0.14 1.00 8.29 71.98 0.60 1.60 16 5 C -0.05 0.18 4.76 -19.88 -0.09 0.09 16 6 C -0.09 0.39 8.97 22.28 0.20 0.59 16 7 C -0.11 0.11 8.66 22.26 0.19 0.30 16 8 C -0.11 -0.56 4.68 -19.77 -0.09 -0.65 16 9 C -0.12 -0.92 2.24 71.23 0.16 -0.76 16 10 O -0.55 -4.32 12.88 -148.98 -1.92 -6.24 16 11 Si 0.98 2.44 25.48 68.60 1.75 4.19 16 12 H -0.25 -0.80 7.11 99.48 0.71 -0.09 16 13 H -0.27 -1.68 7.11 99.48 0.71 -0.97 16 14 H -0.21 0.73 6.74 99.48 0.67 1.40 16 15 C 0.07 0.34 4.78 22.51 0.11 0.45 16 16 O -0.67 -5.74 9.48 -61.53 -0.58 -6.32 16 17 S 2.57 20.56 4.93 -56.49 -0.28 20.28 16 18 O -0.97 -15.81 18.09 -118.57 -2.15 -17.96 16 19 O -0.97 -10.75 14.24 -118.57 -1.69 -12.44 16 20 C -0.62 1.88 5.46 71.98 0.39 2.28 16 21 C -0.12 0.35 4.59 30.59 0.14 0.49 16 22 C -0.41 2.90 4.45 71.98 0.32 3.22 16 23 Si 1.07 -7.00 12.19 68.60 0.84 -6.16 16 24 C -0.47 1.53 8.65 113.37 0.98 2.51 16 25 C -0.46 2.22 8.65 113.37 0.98 3.20 16 26 C -0.48 1.08 8.65 113.37 0.98 2.06 16 27 C -0.13 0.19 7.12 22.37 0.16 0.35 16 28 H 0.06 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.07 -0.65 8.14 -2.38 -0.02 -0.67 16 30 H 0.06 -0.63 7.39 -2.39 -0.02 -0.65 16 31 H 0.07 -0.60 7.51 -2.38 -0.02 -0.62 16 32 H 0.07 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.07 -0.64 7.51 -2.39 -0.02 -0.66 16 34 H 0.06 -0.42 7.39 -2.39 -0.02 -0.44 16 35 H 0.07 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.05 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.17 -1.61 5.89 -2.91 -0.02 -1.63 16 38 H 0.16 -0.80 4.89 -2.91 -0.01 -0.82 16 39 H 0.10 1.22 5.43 -2.39 -0.01 1.21 16 40 H 0.39 -0.62 8.70 -74.06 -0.64 -1.27 16 41 H 0.16 -1.30 6.60 -2.39 -0.02 -1.31 16 42 H 0.16 -1.25 8.14 -2.39 -0.02 -1.27 16 43 H 0.08 -0.23 7.79 -2.38 -0.02 -0.25 16 44 H 0.09 -0.35 7.79 -2.39 -0.02 -0.37 16 45 H 0.10 -0.95 7.96 -2.38 -0.02 -0.97 16 46 H 0.09 -0.82 7.96 -2.39 -0.02 -0.84 16 47 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 48 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 49 H 0.07 -0.15 7.79 -2.38 -0.02 -0.17 16 50 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 51 H 0.06 -0.23 7.96 -2.38 -0.02 -0.25 16 52 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 53 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 54 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 55 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 56 H 0.16 -1.11 6.54 -2.91 -0.02 -1.13 16 Total: 0.00 -23.59 444.00 2.99 -20.60 By element: Atomic # 1 Polarization: -16.42 SS G_CDS: 0.93 Total: -15.50 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 6.09 Total: 19.55 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -6.34 Total: -42.95 kcal Atomic # 14 Polarization: -4.56 SS G_CDS: 2.58 Total: -1.97 kcal Atomic # 16 Polarization: 20.56 SS G_CDS: -0.28 Total: 20.28 kcal Total: -23.59 2.99 -20.60 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16982352_14927650.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.315 kcal (2) G-P(sol) polarization free energy of solvation -23.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds