Wall clock time and date at job start Mon Mar 8 2021 09:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 5 5 O 1.21290 * 119.99693 * 0.02562 * 4 2 1 6 6 C 1.50703 * 120.00267 * 179.97438 * 4 2 1 7 7 H 1.09004 * 109.46763 * 300.00066 * 6 4 2 8 8 C 1.53002 * 109.46635 * 59.99975 * 6 4 2 9 9 C 1.53010 * 109.46509 * 180.02562 * 8 6 4 10 10 C 1.52994 * 109.46953 * 299.99934 * 9 8 6 11 11 H 1.08998 * 109.47490 * 300.00242 * 10 9 8 12 12 N 1.46503 * 109.47267 * 180.02562 * 10 9 8 13 13 S 1.65592 * 120.00143 * 94.99714 * 12 10 9 14 14 O 1.42100 * 106.40298 * 178.54375 * 13 12 10 15 15 O 1.42103 * 106.40505 * 311.46423 * 13 12 10 16 16 C 1.76195 * 107.21932 * 65.00476 * 13 12 10 17 17 C 1.38241 * 119.99927 * 269.72654 * 16 13 12 18 18 C 1.38238 * 120.00022 * 179.78899 * 17 16 13 19 19 C 1.38234 * 119.99621 * 0.43646 * 18 17 16 20 20 C 1.50700 * 119.99573 * 179.83318 * 19 18 17 21 21 O 1.42904 * 109.46854 * 119.98363 * 20 19 18 22 22 Si 1.86301 * 109.47291 * 359.97438 * 20 19 18 23 23 C 1.38230 * 120.00379 * 359.81785 * 19 18 17 24 24 C 1.38231 * 119.99880 * 359.97438 * 23 19 18 25 25 C 1.53005 * 109.47499 * 60.00269 * 10 9 8 26 26 C 1.52994 * 109.46982 * 180.02562 * 6 4 2 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.08994 * 109.47354 * 90.00240 * 3 2 1 31 31 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 32 32 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 33 33 H 1.08999 * 109.46945 * 299.99411 * 8 6 4 34 34 H 1.08998 * 109.47100 * 60.00381 * 8 6 4 35 35 H 1.08996 * 109.46817 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.46918 * 60.00073 * 9 8 6 37 37 H 0.97006 * 119.99518 * 275.00154 * 12 10 9 38 38 H 1.08000 * 119.99617 * 359.97438 * 17 16 13 39 39 H 1.07997 * 120.00005 * 180.27631 * 18 17 16 40 40 H 1.08998 * 109.47122 * 239.97790 * 20 19 18 41 41 H 0.96703 * 113.99989 * 299.99683 * 21 20 19 42 42 H 1.48498 * 110.00185 * 58.67724 * 22 20 19 43 43 H 1.48500 * 109.99780 * 179.97438 * 22 20 19 44 44 H 1.07998 * 120.00047 * 179.97438 * 23 19 18 45 45 H 1.08002 * 120.00034 * 180.02562 * 24 23 19 46 46 H 1.08996 * 109.47379 * 179.97438 * 25 10 9 47 47 H 1.08998 * 109.46771 * 59.99533 * 25 10 9 48 48 H 1.09004 * 109.47423 * 299.99658 * 26 6 4 49 49 H 1.08996 * 109.47376 * 60.00150 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2176 -0.0015 6 6 3.6460 -1.1672 -0.0011 7 1 4.0089 -0.6531 -0.8912 8 6 4.1563 -0.4462 1.2482 9 6 5.6864 -0.4457 1.2472 10 6 6.1969 -1.8880 1.2464 11 1 5.8342 -2.4023 2.1363 12 7 7.6619 -1.8875 1.2461 13 16 8.4902 -2.0129 2.6745 14 8 9.8709 -2.0178 2.3386 15 8 7.9091 -1.0655 3.5599 16 6 8.1358 -3.6032 3.3451 17 6 7.0604 -3.7698 4.1976 18 6 6.7796 -5.0184 4.7203 19 6 7.5797 -6.0985 4.3976 20 6 7.2759 -7.4589 4.9705 21 8 7.0240 -8.3785 3.9060 22 14 5.7730 -7.3500 6.0660 23 6 8.6581 -5.9309 3.5493 24 6 8.9363 -4.6833 3.0233 25 6 5.6864 -2.6090 -0.0029 26 6 4.1559 -2.6097 -0.0023 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 2.3792 1.5834 1.0276 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 3.7930 0.5815 1.2484 34 1 3.7934 -0.9603 2.1381 35 1 6.0501 0.0683 2.1369 36 1 6.0490 0.0686 0.3572 37 1 8.1467 -1.8137 0.4091 38 1 6.4378 -2.9251 4.4529 39 1 5.9369 -5.1495 5.3828 40 1 8.1277 -7.8052 5.5557 41 1 6.2775 -8.1330 3.3425 42 1 4.6121 -6.8485 5.2874 43 1 5.4626 -8.6854 6.6366 44 1 9.2834 -6.7747 3.2976 45 1 9.7786 -4.5524 2.3601 46 1 6.0504 -3.6364 -0.0037 47 1 6.0490 -2.0947 -0.8928 48 1 3.7929 -3.1241 0.8876 49 1 3.7922 -3.1229 -0.8924 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17310140_13421422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:36:37 Heat of formation + Delta-G solvation = -107.110681 kcal Electronic energy + Delta-G solvation = -32598.350586 eV Core-core repulsion = 28233.036442 eV Total energy + Delta-G solvation = -4365.314144 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.149 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.51035 -40.77923 -39.35619 -38.20707 -37.90689 -36.86879 -36.66177 -35.39538 -33.10558 -32.28114 -31.99482 -30.76846 -28.82652 -27.31978 -27.17877 -24.23362 -23.90504 -23.79277 -23.07513 -21.55730 -20.62265 -20.19358 -19.25404 -18.67017 -18.28480 -17.98809 -17.73275 -17.17202 -16.89454 -16.77281 -16.51774 -16.30771 -15.94237 -15.66780 -15.42058 -15.29606 -15.01814 -14.89295 -14.63121 -14.50743 -14.12993 -13.99327 -13.81359 -13.79872 -13.76505 -13.53252 -13.41824 -13.25233 -13.10720 -13.03954 -12.88767 -12.72527 -12.56999 -12.51376 -12.32164 -12.18088 -11.98005 -11.84250 -11.69080 -11.47785 -10.86701 -10.69890 -10.56813 -10.44070 -10.21295 -9.74261 -5.08377 -0.74068 -0.40405 0.11250 1.10780 1.47303 1.61152 1.82077 1.85050 1.96238 2.27306 2.70508 3.15692 3.22079 3.32948 3.38100 3.43694 3.47230 3.67212 3.71533 3.81756 3.89724 3.95497 4.01766 4.04986 4.08058 4.18404 4.20281 4.25384 4.31419 4.31583 4.33496 4.37841 4.50273 4.52506 4.57385 4.65964 4.68997 4.73309 4.83549 4.86506 4.89846 4.91355 4.97294 5.00417 5.04695 5.16382 5.18915 5.27408 5.37661 5.61587 5.81562 6.21097 6.27144 7.14412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.623 5.623 3 C 0.073 3.927 4 C 0.516 3.484 5 O -0.537 6.537 6 C -0.108 4.108 7 H 0.100 0.900 8 C -0.122 4.122 9 C -0.137 4.137 10 C 0.152 3.848 11 H 0.085 0.915 12 N -1.112 6.112 13 S 2.693 3.307 14 O -0.956 6.956 15 O -0.950 6.950 16 C -0.675 4.675 17 C -0.017 4.017 18 C -0.137 4.137 19 C -0.061 4.061 20 C -0.084 4.084 21 O -0.525 6.525 22 Si 0.686 3.314 23 C -0.113 4.113 24 C -0.016 4.016 25 C -0.125 4.125 26 C -0.098 4.098 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.420 0.580 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.378 0.622 42 H -0.256 1.256 43 H -0.253 1.253 44 H 0.137 0.863 45 H 0.143 0.857 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.728 3.410 -0.809 3.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.357 5.357 3 C -0.070 4.070 4 C 0.304 3.696 5 O -0.414 6.414 6 C -0.129 4.129 7 H 0.118 0.882 8 C -0.160 4.160 9 C -0.176 4.176 10 C 0.045 3.955 11 H 0.103 0.897 12 N -0.871 5.871 13 S 2.782 3.218 14 O -0.946 6.946 15 O -0.940 6.940 16 C -0.762 4.762 17 C -0.036 4.036 18 C -0.156 4.156 19 C -0.062 4.062 20 C -0.194 4.194 21 O -0.332 6.332 22 Si 0.586 3.414 23 C -0.132 4.132 24 C -0.036 4.036 25 C -0.164 4.164 26 C -0.136 4.136 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.255 0.745 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.143 0.857 41 H 0.225 0.775 42 H -0.181 1.181 43 H -0.177 1.177 44 H 0.155 0.845 45 H 0.161 0.839 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.092 0.908 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.927 2.881 0.151 3.469 hybrid contribution -0.326 -0.828 -1.534 1.773 sum -2.253 2.053 -1.383 3.347 Atomic orbital electron populations 1.21674 0.78963 1.03317 1.02038 1.47770 1.07266 1.06495 1.74166 1.22034 0.97505 0.85293 1.02168 1.20752 0.90166 0.83119 0.75561 1.90718 1.70380 1.31003 1.49250 1.21401 0.91238 0.99319 1.00951 0.88171 1.21809 0.95607 1.01774 0.96843 1.22094 0.94854 0.96402 1.04269 1.20874 0.77866 0.96805 0.99931 0.89724 1.55655 1.15489 1.90563 1.25412 1.01996 0.72962 0.73904 0.72926 1.93620 1.30580 1.87002 1.83370 1.93611 1.78582 1.57740 1.64035 1.31013 1.07267 1.23126 1.14758 1.20919 0.93360 0.97801 0.91535 1.21167 1.00329 0.92852 1.01228 1.20693 0.94422 0.95694 0.95350 1.25200 1.11748 0.87320 0.95109 1.86631 1.54479 1.48918 1.43131 0.94911 0.76226 0.84843 0.85416 1.21191 0.97240 0.97577 0.97224 1.20995 0.96040 0.91351 0.95183 1.21882 0.95721 1.01337 0.97455 1.21333 0.93798 0.94347 1.04143 0.92615 0.91059 0.90439 0.91804 0.90466 0.90830 0.89700 0.90948 0.89528 0.90697 0.74465 0.83729 0.84517 0.85695 0.77452 1.18105 1.17745 0.84468 0.83899 0.90590 0.90705 0.90805 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.07 10.44 59.85 0.62 0.56 16 2 N -0.62 0.31 3.27 -189.51 -0.62 -0.31 16 3 C 0.07 -0.28 8.80 59.85 0.53 0.25 16 4 C 0.52 0.71 7.08 -10.98 -0.08 0.63 16 5 O -0.54 -2.92 15.56 5.55 0.09 -2.84 16 6 C -0.11 0.19 1.72 -91.77 -0.16 0.03 16 7 H 0.10 -0.32 7.40 -51.93 -0.38 -0.71 16 8 C -0.12 0.34 4.84 -26.72 -0.13 0.21 16 9 C -0.14 0.37 5.53 -26.73 -0.15 0.22 16 10 C 0.15 -0.39 2.65 -67.93 -0.18 -0.57 16 11 H 0.08 -0.24 7.24 -51.93 -0.38 -0.62 16 12 N -1.11 2.63 5.47 -4.89 -0.03 2.60 16 13 S 2.69 1.54 5.65 -107.50 -0.61 0.93 16 14 O -0.96 -3.42 17.28 -57.17 -0.99 -4.41 16 15 O -0.95 -2.73 16.54 -57.17 -0.95 -3.67 16 16 C -0.68 -0.07 5.81 -39.58 -0.23 -0.30 16 17 C -0.02 0.01 8.92 -39.58 -0.35 -0.34 16 18 C -0.14 0.14 8.67 -39.58 -0.34 -0.20 16 19 C -0.06 0.04 5.39 -104.63 -0.56 -0.53 16 20 C -0.08 0.09 2.82 36.01 0.10 0.19 16 21 O -0.53 -0.15 12.77 -35.23 -0.45 -0.60 16 22 Si 0.69 -1.10 29.79 -169.99 -5.06 -6.17 16 23 C -0.11 0.02 9.61 -39.59 -0.38 -0.36 16 24 C -0.02 0.00 9.52 -39.59 -0.38 -0.38 16 25 C -0.12 0.38 5.45 -26.70 -0.15 0.23 16 26 C -0.10 0.13 4.50 -26.71 -0.12 0.01 16 27 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 28 H 0.07 -0.20 8.07 -51.93 -0.42 -0.62 16 29 H 0.08 0.07 7.42 -51.93 -0.39 -0.32 16 30 H 0.06 -0.29 6.95 -51.93 -0.36 -0.65 16 31 H 0.08 -0.37 6.01 -51.93 -0.31 -0.69 16 32 H 0.07 -0.34 8.07 -51.93 -0.42 -0.76 16 33 H 0.08 -0.33 4.53 -51.93 -0.24 -0.56 16 34 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 35 H 0.09 -0.13 7.64 -51.93 -0.40 -0.53 16 36 H 0.07 -0.27 8.14 -51.93 -0.42 -0.70 16 37 H 0.42 -1.72 8.84 -34.47 -0.30 -2.03 16 38 H 0.15 -0.30 7.61 -52.49 -0.40 -0.70 16 39 H 0.14 -0.40 4.88 -52.49 -0.26 -0.66 16 40 H 0.13 -0.23 7.96 -51.93 -0.41 -0.65 16 41 H 0.38 -0.94 8.70 45.56 0.40 -0.54 16 42 H -0.26 -0.06 7.11 56.52 0.40 0.34 16 43 H -0.25 -0.45 7.11 56.52 0.40 -0.04 16 44 H 0.14 -0.15 8.06 -52.49 -0.42 -0.57 16 45 H 0.14 -0.16 7.62 -52.49 -0.40 -0.56 16 46 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 47 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 48 H 0.07 -0.01 8.10 -51.93 -0.42 -0.43 16 49 H 0.08 -0.02 8.10 -51.93 -0.42 -0.44 16 LS Contribution 396.23 15.07 5.97 5.97 Total: 0.00 -11.83 396.23 -11.84 -23.67 By element: Atomic # 1 Polarization: -7.58 SS G_CDS: -7.24 Total: -14.83 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.95 Total: -0.35 kcal Atomic # 7 Polarization: 2.94 SS G_CDS: -0.65 Total: 2.29 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -2.30 Total: -11.51 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.06 Total: -6.17 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -0.61 Total: 0.93 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -11.83 -11.84 -23.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_13421422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.445 kcal (2) G-P(sol) polarization free energy of solvation -11.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds