Wall clock time and date at job start Mon Mar 8 2021 09:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00028 * 2 1 4 4 C 1.34776 * 120.00241 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99791 * 4.89876 * 4 2 1 6 6 C 1.50699 * 120.00006 * 184.89634 * 4 2 1 7 7 H 1.08997 * 109.47173 * 322.70437 * 6 4 2 8 8 C 1.52999 * 109.47149 * 82.70805 * 6 4 2 9 9 C 1.52999 * 109.47189 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47355 * 300.00111 * 9 8 6 11 11 H 1.08997 * 109.47303 * 300.00317 * 10 9 8 12 12 N 1.46495 * 109.47288 * 180.02562 * 10 9 8 13 13 S 1.65601 * 120.00182 * 143.08475 * 12 10 9 14 14 O 1.42099 * 106.40293 * 46.99970 * 13 12 10 15 15 O 1.42101 * 106.40365 * 179.97438 * 13 12 10 16 16 C 1.76198 * 107.21701 * 293.45803 * 13 12 10 17 17 C 1.33386 * 125.20625 * 183.93292 * 16 13 12 18 18 C 1.50703 * 122.53502 * 0.02562 * 17 16 13 19 19 O 1.42893 * 109.47371 * 284.99718 * 18 17 16 20 20 Si 1.86308 * 109.46626 * 165.00029 * 18 17 16 21 21 C 1.38425 * 114.92649 * 179.86092 * 17 16 13 22 22 C 1.33392 * 114.91266 * 0.43073 * 21 17 16 23 23 S 1.75883 * 109.59809 * 359.77187 * 22 21 17 24 24 C 1.52999 * 109.47063 * 59.99812 * 10 9 8 25 25 C 1.52999 * 109.47189 * 300.00289 * 24 10 9 26 26 H 1.08997 * 109.47671 * 270.00319 * 1 2 3 27 27 H 1.08998 * 109.46854 * 30.01018 * 1 2 3 28 28 H 1.09005 * 109.46943 * 149.99945 * 1 2 3 29 29 H 1.08998 * 109.47151 * 184.71022 * 3 2 1 30 30 H 1.08999 * 109.46784 * 304.70891 * 3 2 1 31 31 H 1.09004 * 109.47158 * 64.70636 * 3 2 1 32 32 H 1.09007 * 109.47088 * 60.00222 * 8 6 4 33 33 H 1.08993 * 109.46985 * 299.99921 * 8 6 4 34 34 H 1.08997 * 109.47387 * 59.99996 * 9 8 6 35 35 H 1.09007 * 109.47237 * 180.02562 * 9 8 6 36 36 H 0.97000 * 120.00116 * 323.07958 * 12 10 9 37 37 H 1.09003 * 109.47193 * 45.00422 * 18 17 16 38 38 H 0.96702 * 114.00184 * 180.02562 * 19 18 17 39 39 H 1.48500 * 109.99964 * 298.67941 * 20 18 17 40 40 H 1.48495 * 109.99995 * 60.00431 * 20 18 17 41 41 H 1.07996 * 122.54357 * 180.20296 * 21 17 16 42 42 H 1.08009 * 125.19707 * 179.74851 * 22 21 17 43 43 H 1.08997 * 109.47383 * 60.00226 * 24 10 9 44 44 H 1.09003 * 109.47121 * 179.97438 * 24 10 9 45 45 H 1.09004 * 109.47473 * 180.02562 * 25 24 10 46 46 H 1.09007 * 109.47158 * 299.99501 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5358 -2.2156 -0.0887 6 6 3.6418 -1.1694 0.1119 7 1 4.0488 -0.3269 -0.4471 8 6 4.0443 -1.0477 1.5830 9 6 5.5701 -1.0507 1.6961 10 6 6.1215 -2.3577 1.1230 11 1 5.7141 -3.2001 1.6819 12 7 7.5824 -2.3608 1.2319 13 16 8.3835 -3.7664 1.5853 14 8 7.8388 -4.7640 0.7325 15 8 9.7666 -3.4423 1.6194 16 6 7.9397 -4.2204 3.2289 17 6 8.4391 -5.2584 3.9014 18 6 9.4704 -6.1858 3.3117 19 8 8.8448 -7.0526 2.3635 20 14 10.2397 -7.2029 4.6699 21 6 7.9412 -5.4173 5.1832 22 6 7.0307 -4.5134 5.5483 23 16 6.7646 -3.3787 4.2311 24 6 5.7190 -2.4794 -0.3481 25 6 4.1932 -2.4765 -0.4613 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3633 -0.8900 -0.5139 29 1 3.2661 1.0713 -0.0844 30 1 1.8723 1.8759 -0.8448 31 1 1.9989 1.8030 0.9292 32 1 3.6373 -1.8904 2.1420 33 1 3.6511 -0.1168 1.9914 34 1 5.9776 -0.2084 1.1371 35 1 5.8569 -0.9644 2.7442 36 1 8.0806 -1.5395 1.0969 37 1 10.2434 -5.6002 2.8140 38 1 9.4505 -7.6786 1.9434 39 1 10.9210 -6.3149 5.6458 40 1 9.1961 -8.0061 5.3562 41 1 8.2627 -6.2148 5.8366 42 1 6.5326 -4.4833 6.5062 43 1 6.1264 -1.6371 -0.9072 44 1 6.1122 -3.4104 -0.7566 45 1 3.9064 -2.5636 -1.5092 46 1 3.7858 -3.3189 0.0978 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17310140_13652106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:36:42 Heat of formation + Delta-G solvation = -93.516714 kcal Electronic energy + Delta-G solvation = -31405.707778 eV Core-core repulsion = 27130.135359 eV Total energy + Delta-G solvation = -4275.572419 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.105 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.44565 -39.98247 -39.36469 -38.06238 -37.19095 -36.76157 -36.56079 -35.42271 -31.96327 -31.56277 -30.82082 -28.85990 -28.09273 -27.07574 -24.24706 -24.00942 -23.81018 -21.94903 -21.27398 -20.09243 -19.75969 -19.61600 -18.55032 -18.24998 -18.04404 -17.63568 -17.35026 -17.11974 -16.69387 -16.22939 -15.99757 -15.57761 -15.50814 -15.24728 -14.94390 -14.67114 -14.52837 -14.46826 -14.24916 -14.22144 -13.80223 -13.73028 -13.60141 -13.52664 -13.39041 -13.27338 -13.11513 -13.03909 -12.94281 -12.62236 -12.53914 -12.44453 -12.35326 -12.23292 -12.15204 -11.82682 -11.73466 -11.46076 -10.66874 -10.61234 -10.47778 -10.42088 -9.73562 -9.72057 -5.07399 -0.70890 -0.66785 0.16869 0.51728 1.13188 1.15632 1.59116 1.62392 1.85449 1.88821 1.98357 2.61284 3.19280 3.33260 3.41102 3.53006 3.59318 3.73797 3.77128 3.81659 3.86014 3.96323 4.00085 4.01804 4.10137 4.18739 4.25116 4.26713 4.30194 4.35681 4.36307 4.56622 4.57989 4.58199 4.61244 4.68706 4.79253 4.84186 4.86433 4.92778 4.95399 5.02473 5.14450 5.21810 5.34505 5.41929 5.79975 6.29352 6.55952 7.17430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.624 5.624 3 C 0.071 3.929 4 C 0.516 3.484 5 O -0.533 6.533 6 C -0.111 4.111 7 H 0.098 0.902 8 C -0.107 4.107 9 C -0.125 4.125 10 C 0.146 3.854 11 H 0.088 0.912 12 N -1.115 6.115 13 S 2.715 3.285 14 O -0.922 6.922 15 O -0.950 6.950 16 C -0.767 4.767 17 C 0.052 3.948 18 C -0.106 4.106 19 O -0.530 6.530 20 Si 0.710 3.290 21 C -0.163 4.163 22 C -0.163 4.163 23 S 0.209 5.791 24 C -0.136 4.136 25 C -0.101 4.101 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.422 0.578 37 H 0.087 0.913 38 H 0.388 0.612 39 H -0.250 1.250 40 H -0.245 1.245 41 H 0.150 0.850 42 H 0.180 0.820 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 5.216 2.126 5.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.358 5.358 3 C -0.072 4.072 4 C 0.304 3.696 5 O -0.409 6.409 6 C -0.132 4.132 7 H 0.116 0.884 8 C -0.146 4.146 9 C -0.164 4.164 10 C 0.040 3.960 11 H 0.106 0.894 12 N -0.875 5.875 13 S 2.799 3.201 14 O -0.911 6.911 15 O -0.941 6.941 16 C -0.967 4.967 17 C 0.035 3.965 18 C -0.218 4.218 19 O -0.337 6.337 20 Si 0.609 3.391 21 C -0.193 4.193 22 C -0.300 4.300 23 S 0.475 5.525 24 C -0.175 4.175 25 C -0.140 4.140 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.257 0.743 37 H 0.105 0.895 38 H 0.237 0.763 39 H -0.174 1.174 40 H -0.170 1.170 41 H 0.168 0.832 42 H 0.197 0.803 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.502 5.494 2.468 6.044 hybrid contribution 0.343 -0.059 0.805 0.877 sum -0.159 5.436 3.272 6.347 Atomic orbital electron populations 1.21656 0.78990 1.03395 1.02003 1.47782 1.07281 1.06490 1.74254 1.21969 0.97701 0.85245 1.02331 1.20730 0.90038 0.83161 0.75662 1.90722 1.70329 1.31147 1.48727 1.21472 0.91603 1.01331 0.98804 0.88381 1.21469 0.95360 1.03554 0.94201 1.21888 0.95240 0.97174 1.02064 1.20989 0.77806 0.99506 0.97748 0.89447 1.55718 1.16204 1.28549 1.87029 1.01649 0.73076 0.72768 0.72621 1.93665 1.79176 1.56864 1.61407 1.93621 1.30032 1.83716 1.86687 1.35781 1.17503 1.13201 1.30171 1.17920 0.93713 0.92125 0.92745 1.24944 0.96638 0.97241 1.02963 1.86594 1.38193 1.51110 1.57821 0.94679 0.83537 0.83739 0.77179 1.20218 1.00346 1.02267 0.96502 1.26121 1.01516 0.98684 1.03682 1.83975 1.36299 1.28463 1.03768 1.22073 0.95845 1.04200 0.95355 1.21384 0.94115 0.96272 1.02225 0.92640 0.91130 0.90324 0.89833 0.91620 0.91922 0.90583 0.90561 0.90230 0.90464 0.74271 0.89500 0.76293 1.17389 1.16956 0.83249 0.80279 0.90771 0.89570 0.90701 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.04 10.52 59.84 0.63 0.59 16 2 N -0.62 0.12 3.27 -189.52 -0.62 -0.50 16 3 C 0.07 -0.26 10.23 59.85 0.61 0.36 16 4 C 0.52 0.94 6.80 -10.99 -0.07 0.87 16 5 O -0.53 -3.24 15.62 5.56 0.09 -3.15 16 6 C -0.11 0.13 1.69 -91.77 -0.15 -0.02 16 7 H 0.10 -0.33 6.14 -51.93 -0.32 -0.65 16 8 C -0.11 0.27 5.14 -26.73 -0.14 0.13 16 9 C -0.12 0.41 5.46 -26.73 -0.15 0.27 16 10 C 0.15 -0.15 2.02 -67.93 -0.14 -0.29 16 11 H 0.09 -0.02 7.04 -51.93 -0.37 -0.39 16 12 N -1.11 0.71 5.28 -4.89 -0.03 0.69 16 13 S 2.72 8.74 5.04 -107.50 -0.54 8.19 16 14 O -0.92 -5.43 17.20 -57.42 -0.99 -6.42 16 15 O -0.95 -5.01 17.22 -57.17 -0.98 -6.00 16 16 C -0.77 -2.36 6.46 29.04 0.19 -2.17 16 17 C 0.05 0.18 5.17 -106.25 -0.55 -0.37 16 18 C -0.11 -0.22 2.32 36.01 0.08 -0.14 16 19 O -0.53 -1.24 12.59 -35.23 -0.44 -1.68 16 20 Si 0.71 -0.36 30.41 -169.99 -5.17 -5.53 16 21 C -0.16 -0.35 8.74 -41.21 -0.36 -0.71 16 22 C -0.16 -0.05 11.23 29.04 0.33 0.27 16 23 S 0.21 0.04 21.48 -107.50 -2.31 -2.27 16 24 C -0.14 0.07 5.53 -26.73 -0.15 -0.08 16 25 C -0.10 -0.03 4.70 -26.73 -0.13 -0.15 16 26 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.07 -0.17 8.07 -51.93 -0.42 -0.59 16 28 H 0.08 0.10 7.36 -51.93 -0.38 -0.28 16 29 H 0.08 -0.41 5.27 -51.93 -0.27 -0.69 16 30 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 31 H 0.06 -0.28 8.14 -51.93 -0.42 -0.70 16 32 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 33 H 0.08 -0.28 7.83 -51.93 -0.41 -0.68 16 34 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 35 H 0.08 -0.30 8.04 -51.92 -0.42 -0.72 16 36 H 0.42 -1.30 8.86 -34.47 -0.31 -1.61 16 37 H 0.09 0.14 7.00 -51.93 -0.36 -0.22 16 38 H 0.39 -1.16 8.74 45.56 0.40 -0.76 16 39 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 40 H -0.25 -0.36 6.87 56.52 0.39 0.03 16 41 H 0.15 0.14 5.57 -52.49 -0.29 -0.15 16 42 H 0.18 -0.49 8.06 -52.48 -0.42 -0.92 16 43 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 44 H 0.09 0.10 7.85 -51.93 -0.41 -0.30 16 45 H 0.07 0.06 8.14 -51.93 -0.42 -0.37 16 46 H 0.08 0.16 7.88 -51.93 -0.41 -0.25 16 LS Contribution 388.80 15.07 5.86 5.86 Total: 0.00 -12.87 388.80 -11.69 -24.56 By element: Atomic # 1 Polarization: -5.75 SS G_CDS: -6.56 Total: -12.31 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 0.01 Total: -1.44 kcal Atomic # 7 Polarization: 0.83 SS G_CDS: -0.65 Total: 0.19 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -2.33 Total: -17.25 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: -5.17 Total: -5.53 kcal Atomic # 16 Polarization: 8.78 SS G_CDS: -2.85 Total: 5.93 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -12.87 -11.69 -24.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_13652106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.961 kcal (2) G-P(sol) polarization free energy of solvation -12.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds