Wall clock time and date at job start Mon Mar 8 2021 09:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00028 * 2 1 4 4 C 1.34776 * 120.00241 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99791 * 4.89876 * 4 2 1 6 6 C 1.50699 * 120.00006 * 184.89634 * 4 2 1 7 7 H 1.08997 * 109.47173 * 322.70437 * 6 4 2 8 8 C 1.52999 * 109.47149 * 82.70805 * 6 4 2 9 9 C 1.52999 * 109.47189 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47355 * 300.00111 * 9 8 6 11 11 H 1.08997 * 109.47303 * 300.00317 * 10 9 8 12 12 N 1.46495 * 109.47288 * 180.02562 * 10 9 8 13 13 S 1.65601 * 120.00182 * 143.08475 * 12 10 9 14 14 O 1.42099 * 106.40293 * 46.99970 * 13 12 10 15 15 O 1.42101 * 106.40365 * 179.97438 * 13 12 10 16 16 C 1.76198 * 107.21701 * 293.45803 * 13 12 10 17 17 C 1.33386 * 125.20625 * 183.93292 * 16 13 12 18 18 C 1.50703 * 122.53502 * 0.02562 * 17 16 13 19 19 O 1.42893 * 109.47371 * 284.99718 * 18 17 16 20 20 Si 1.86308 * 109.46626 * 165.00029 * 18 17 16 21 21 C 1.38425 * 114.92649 * 179.86092 * 17 16 13 22 22 C 1.33392 * 114.91266 * 0.43073 * 21 17 16 23 23 S 1.75883 * 109.59809 * 359.77187 * 22 21 17 24 24 C 1.52999 * 109.47063 * 59.99812 * 10 9 8 25 25 C 1.52999 * 109.47189 * 300.00289 * 24 10 9 26 26 H 1.08997 * 109.47671 * 270.00319 * 1 2 3 27 27 H 1.08998 * 109.46854 * 30.01018 * 1 2 3 28 28 H 1.09005 * 109.46943 * 149.99945 * 1 2 3 29 29 H 1.08998 * 109.47151 * 184.71022 * 3 2 1 30 30 H 1.08999 * 109.46784 * 304.70891 * 3 2 1 31 31 H 1.09004 * 109.47158 * 64.70636 * 3 2 1 32 32 H 1.09007 * 109.47088 * 60.00222 * 8 6 4 33 33 H 1.08993 * 109.46985 * 299.99921 * 8 6 4 34 34 H 1.08997 * 109.47387 * 59.99996 * 9 8 6 35 35 H 1.09007 * 109.47237 * 180.02562 * 9 8 6 36 36 H 0.97000 * 120.00116 * 323.07958 * 12 10 9 37 37 H 1.09003 * 109.47193 * 45.00422 * 18 17 16 38 38 H 0.96702 * 114.00184 * 180.02562 * 19 18 17 39 39 H 1.48500 * 109.99964 * 298.67941 * 20 18 17 40 40 H 1.48495 * 109.99995 * 60.00431 * 20 18 17 41 41 H 1.07996 * 122.54357 * 180.20296 * 21 17 16 42 42 H 1.08009 * 125.19707 * 179.74851 * 22 21 17 43 43 H 1.08997 * 109.47383 * 60.00226 * 24 10 9 44 44 H 1.09003 * 109.47121 * 179.97438 * 24 10 9 45 45 H 1.09004 * 109.47473 * 180.02562 * 25 24 10 46 46 H 1.09007 * 109.47158 * 299.99501 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5358 -2.2156 -0.0887 6 6 3.6418 -1.1694 0.1119 7 1 4.0488 -0.3269 -0.4471 8 6 4.0443 -1.0477 1.5830 9 6 5.5701 -1.0507 1.6961 10 6 6.1215 -2.3577 1.1230 11 1 5.7141 -3.2001 1.6819 12 7 7.5824 -2.3608 1.2319 13 16 8.3835 -3.7664 1.5853 14 8 7.8388 -4.7640 0.7325 15 8 9.7666 -3.4423 1.6194 16 6 7.9397 -4.2204 3.2289 17 6 8.4391 -5.2584 3.9014 18 6 9.4704 -6.1858 3.3117 19 8 8.8448 -7.0526 2.3635 20 14 10.2397 -7.2029 4.6699 21 6 7.9412 -5.4173 5.1832 22 6 7.0307 -4.5134 5.5483 23 16 6.7646 -3.3787 4.2311 24 6 5.7190 -2.4794 -0.3481 25 6 4.1932 -2.4765 -0.4613 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8899 -0.5140 28 1 -0.3633 -0.8900 -0.5139 29 1 3.2661 1.0713 -0.0844 30 1 1.8723 1.8759 -0.8448 31 1 1.9989 1.8030 0.9292 32 1 3.6373 -1.8904 2.1420 33 1 3.6511 -0.1168 1.9914 34 1 5.9776 -0.2084 1.1371 35 1 5.8569 -0.9644 2.7442 36 1 8.0806 -1.5395 1.0969 37 1 10.2434 -5.6002 2.8140 38 1 9.4505 -7.6786 1.9434 39 1 10.9210 -6.3149 5.6458 40 1 9.1961 -8.0061 5.3562 41 1 8.2627 -6.2148 5.8366 42 1 6.5326 -4.4833 6.5062 43 1 6.1264 -1.6371 -0.9072 44 1 6.1122 -3.4104 -0.7566 45 1 3.9064 -2.5636 -1.5092 46 1 3.7858 -3.3189 0.0978 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17310140_13652106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:36:42 Heat of formation + Delta-G solvation = -100.431487 kcal Electronic energy + Delta-G solvation = -31406.007626 eV Core-core repulsion = 27130.135359 eV Total energy + Delta-G solvation = -4275.872266 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.105 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46474 -40.06272 -39.36415 -38.37066 -37.31603 -37.07224 -36.60871 -35.43148 -31.87329 -31.63185 -30.78144 -28.71065 -28.20634 -27.00808 -24.31859 -23.94043 -23.72110 -22.02503 -21.27520 -20.11671 -19.90082 -19.69016 -18.66911 -18.33499 -18.05746 -17.70533 -17.44214 -17.15751 -16.67202 -16.38596 -16.13473 -15.64734 -15.43967 -15.18838 -14.88138 -14.75066 -14.54284 -14.53267 -14.33794 -14.23241 -13.87086 -13.64809 -13.50598 -13.44998 -13.40708 -13.36712 -13.31130 -13.19071 -13.00014 -12.77599 -12.63474 -12.41527 -12.36795 -12.26676 -12.07798 -11.91784 -11.66867 -11.38548 -10.74508 -10.62473 -10.56151 -10.50958 -9.75540 -9.71748 -5.04085 -0.87532 -0.81267 0.09423 0.46680 1.04231 1.12358 1.54709 1.59891 1.78471 1.83232 2.04479 2.40401 3.17632 3.34394 3.46048 3.54821 3.63224 3.72966 3.75794 3.83239 3.89583 4.02756 4.10010 4.12033 4.15539 4.21458 4.33694 4.42665 4.48049 4.48741 4.49176 4.50297 4.72638 4.74092 4.75612 4.80305 4.85262 4.88521 4.91707 5.03669 5.08643 5.14313 5.17825 5.28259 5.40242 5.47770 5.95123 6.32846 6.70167 7.12298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.623 5.623 3 C 0.063 3.937 4 C 0.507 3.493 5 O -0.590 6.590 6 C -0.103 4.103 7 H 0.130 0.870 8 C -0.104 4.104 9 C -0.119 4.119 10 C 0.141 3.859 11 H 0.075 0.925 12 N -1.098 6.098 13 S 2.726 3.274 14 O -0.958 6.958 15 O -0.978 6.978 16 C -0.797 4.797 17 C 0.026 3.974 18 C -0.133 4.133 19 O -0.552 6.552 20 Si 0.806 3.194 21 C -0.189 4.189 22 C -0.157 4.157 23 S 0.252 5.748 24 C -0.133 4.133 25 C -0.099 4.099 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.436 0.564 37 H 0.083 0.917 38 H 0.406 0.594 39 H -0.277 1.277 40 H -0.271 1.271 41 H 0.156 0.844 42 H 0.212 0.788 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 7.775 3.179 8.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.355 5.355 3 C -0.078 4.078 4 C 0.296 3.704 5 O -0.470 6.470 6 C -0.124 4.124 7 H 0.148 0.852 8 C -0.143 4.143 9 C -0.158 4.158 10 C 0.034 3.966 11 H 0.093 0.907 12 N -0.863 5.863 13 S 2.811 3.189 14 O -0.948 6.948 15 O -0.968 6.968 16 C -0.998 4.998 17 C 0.009 3.991 18 C -0.242 4.242 19 O -0.363 6.363 20 Si 0.707 3.293 21 C -0.219 4.219 22 C -0.294 4.294 23 S 0.519 5.481 24 C -0.172 4.172 25 C -0.138 4.138 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.274 0.726 37 H 0.101 0.899 38 H 0.258 0.742 39 H -0.203 1.203 40 H -0.198 1.198 41 H 0.173 0.827 42 H 0.229 0.771 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.253 8.111 3.467 8.824 hybrid contribution 0.148 -0.777 0.467 0.919 sum -0.105 7.334 3.934 8.323 Atomic orbital electron populations 1.21697 0.79288 1.03270 1.02190 1.47967 1.07519 1.07260 1.72790 1.22249 0.98377 0.83648 1.03576 1.21308 0.91269 0.82926 0.74856 1.90695 1.71570 1.33243 1.51540 1.21488 0.89470 1.01249 1.00208 0.85250 1.21480 0.95903 1.04001 0.92877 1.21914 0.94364 0.96344 1.03139 1.21124 0.77216 1.00845 0.97426 0.90717 1.55361 1.16366 1.27922 1.86627 1.00959 0.72487 0.72954 0.72496 1.93618 1.79597 1.58703 1.62879 1.93571 1.31886 1.84180 1.87166 1.35753 1.19189 1.14337 1.30475 1.18335 0.94439 0.92683 0.93637 1.25416 0.96584 0.98002 1.04207 1.86543 1.39635 1.51739 1.58339 0.93585 0.80965 0.80909 0.73878 1.20366 1.01645 1.03505 0.96376 1.26617 1.00331 0.97645 1.04816 1.83686 1.34516 1.27385 1.02556 1.22036 0.95080 1.04010 0.96062 1.21304 0.94651 0.96578 1.01303 0.92333 0.88778 0.92884 0.88070 0.90636 0.90448 0.92278 0.88332 0.87417 0.89185 0.72568 0.89928 0.74177 1.20284 1.19752 0.82694 0.77116 0.88365 0.91995 0.91742 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.06 10.52 127.77 1.34 1.29 16 2 N -0.62 0.64 3.27 -871.90 -2.85 -2.21 16 3 C 0.06 -0.62 10.23 127.77 1.31 0.69 16 4 C 0.51 2.13 6.80 87.66 0.60 2.73 16 5 O -0.59 -8.67 15.62 -3.04 -0.05 -8.72 16 6 C -0.10 0.32 1.69 -11.54 -0.02 0.30 16 7 H 0.13 -1.23 6.14 -2.39 -0.01 -1.24 16 8 C -0.10 0.68 5.14 30.59 0.16 0.83 16 9 C -0.12 1.05 5.46 30.59 0.17 1.22 16 10 C 0.14 -0.30 2.02 44.99 0.09 -0.21 16 11 H 0.07 0.04 7.04 -2.39 -0.02 0.02 16 12 N -1.10 1.43 5.28 -169.40 -0.89 0.54 16 13 S 2.73 21.75 5.04 -56.49 -0.28 21.47 16 14 O -0.96 -13.81 17.20 -127.76 -2.20 -16.00 16 15 O -0.98 -11.92 17.22 -128.01 -2.20 -14.12 16 16 C -0.80 -5.79 6.46 66.72 0.43 -5.36 16 17 C 0.03 0.22 5.17 -20.92 -0.11 0.11 16 18 C -0.13 -0.78 2.32 71.24 0.17 -0.62 16 19 O -0.55 -3.68 12.59 -148.98 -1.88 -5.56 16 20 Si 0.81 -0.28 30.41 68.60 2.09 1.81 16 21 C -0.19 -0.90 8.74 21.22 0.19 -0.71 16 22 C -0.16 0.00 11.23 66.72 0.75 0.75 16 23 S 0.25 -0.01 21.48 -56.49 -1.21 -1.22 16 24 C -0.13 0.07 5.53 30.59 0.17 0.24 16 25 C -0.10 -0.18 4.70 30.59 0.14 -0.04 16 26 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.09 -0.55 8.07 -2.39 -0.02 -0.57 16 28 H 0.05 0.25 7.36 -2.38 -0.02 0.23 16 29 H 0.10 -1.37 5.27 -2.39 -0.01 -1.38 16 30 H 0.07 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.08 -0.93 8.14 -2.39 -0.02 -0.95 16 32 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 33 H 0.10 -1.02 7.83 -2.39 -0.02 -1.04 16 34 H 0.11 -1.48 8.14 -2.39 -0.02 -1.50 16 35 H 0.09 -0.96 8.04 -2.38 -0.02 -0.98 16 36 H 0.44 -3.13 8.86 -96.75 -0.86 -3.98 16 37 H 0.08 0.46 7.00 -2.39 -0.02 0.44 16 38 H 0.41 -1.72 8.74 -74.06 -0.65 -2.37 16 39 H -0.28 -1.05 7.11 99.48 0.71 -0.34 16 40 H -0.27 -0.99 6.87 99.48 0.68 -0.31 16 41 H 0.16 0.39 5.57 -2.91 -0.02 0.38 16 42 H 0.21 -1.58 8.06 -2.91 -0.02 -1.60 16 43 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H 0.06 0.29 7.85 -2.39 -0.02 0.27 16 45 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.05 0.38 7.88 -2.38 -0.02 0.36 16 Total: 0.00 -34.28 388.80 -4.57 -38.85 By element: Atomic # 1 Polarization: -15.58 SS G_CDS: -0.46 Total: -16.04 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.38 Total: 1.21 kcal Atomic # 7 Polarization: 2.08 SS G_CDS: -3.75 Total: -1.67 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -6.32 Total: -44.40 kcal Atomic # 14 Polarization: -0.28 SS G_CDS: 2.09 Total: 1.81 kcal Atomic # 16 Polarization: 21.74 SS G_CDS: -1.50 Total: 20.24 kcal Total: -34.28 -4.57 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_13652106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.581 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds