Wall clock time and date at job start Mon Mar 8 2021 09:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46491 * 119.99855 * 2 1 4 4 C 1.34779 * 119.99658 * 179.97438 * 2 1 3 5 5 O 1.21275 * 120.00249 * 4.11486 * 4 2 1 6 6 C 1.50702 * 119.99616 * 184.11817 * 4 2 1 7 7 H 1.08998 * 109.46985 * 317.41325 * 6 4 2 8 8 C 1.52996 * 109.47242 * 77.41568 * 6 4 2 9 9 C 1.53009 * 109.46934 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46979 * 300.00042 * 9 8 6 11 11 H 1.08998 * 109.46972 * 299.99912 * 10 9 8 12 12 N 1.46495 * 109.47079 * 180.02562 * 10 9 8 13 13 S 1.65599 * 120.00165 * 95.52385 * 12 10 9 14 14 O 1.42094 * 106.40367 * 312.60155 * 13 12 10 15 15 O 1.42105 * 106.40268 * 179.67587 * 13 12 10 16 16 C 1.76204 * 107.21510 * 66.14006 * 13 12 10 17 17 C 1.33390 * 122.53880 * 164.27530 * 16 13 12 18 18 C 1.50698 * 125.20505 * 359.95278 * 17 16 13 19 19 O 1.42900 * 109.46825 * 38.94138 * 18 17 16 20 20 Si 1.86298 * 109.47253 * 158.94271 * 18 17 16 21 21 S 1.75882 * 109.59149 * 180.21856 * 17 16 13 22 22 C 1.75885 * 90.97213 * 359.68432 * 21 17 16 23 23 C 1.33388 * 109.58912 * 0.31498 * 22 21 17 24 24 C 1.52998 * 109.47035 * 59.99958 * 10 9 8 25 25 C 1.53000 * 109.47302 * 299.99718 * 24 10 9 26 26 H 1.08992 * 109.47004 * 240.00180 * 1 2 3 27 27 H 1.08994 * 109.46925 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46656 * 119.99804 * 1 2 3 29 29 H 1.08998 * 109.47330 * 265.97760 * 3 2 1 30 30 H 1.09005 * 109.47718 * 25.97664 * 3 2 1 31 31 H 1.08998 * 109.47240 * 145.97976 * 3 2 1 32 32 H 1.08998 * 109.47305 * 299.99849 * 8 6 4 33 33 H 1.08998 * 109.47329 * 59.99967 * 8 6 4 34 34 H 1.09001 * 109.46983 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46689 * 59.99957 * 9 8 6 36 36 H 0.96997 * 119.99774 * 275.52533 * 12 10 9 37 37 H 1.09002 * 109.46872 * 278.94736 * 18 17 16 38 38 H 0.96697 * 114.00159 * 65.91727 * 19 18 17 39 39 H 1.48501 * 109.99900 * 58.68470 * 20 18 17 40 40 H 1.48503 * 109.99723 * 179.97438 * 20 18 17 41 41 H 1.07997 * 125.20450 * 180.10410 * 22 21 17 42 42 H 1.08000 * 122.53340 * 179.73688 * 23 22 21 43 43 H 1.08998 * 109.47278 * 60.00142 * 24 10 9 44 44 H 1.08998 * 109.47018 * 180.02562 * 24 10 9 45 45 H 1.09001 * 109.47013 * 180.02562 * 25 24 10 46 46 H 1.08998 * 109.47300 * 300.00411 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5349 -2.2162 -0.0744 6 6 3.6430 -1.1689 0.0943 7 1 4.0480 -0.3885 -0.5500 8 6 4.0641 -0.9053 1.5413 9 6 5.5913 -0.9063 1.6363 10 6 6.1292 -2.2668 1.1883 11 1 5.7245 -3.0475 1.8324 12 7 7.5913 -2.2680 1.2798 13 16 8.3360 -2.8746 2.6288 14 8 7.6670 -2.3063 3.7462 15 8 9.7337 -2.7416 2.4096 16 6 8.0021 -4.6041 2.6757 17 6 8.6914 -5.4472 3.4460 18 6 9.8236 -5.0594 4.3618 19 8 9.5222 -3.8117 4.9898 20 14 10.0464 -6.3726 5.6643 21 16 8.0815 -7.0819 3.2237 22 6 6.8834 -6.5101 2.0700 23 6 7.0044 -5.1906 1.9164 24 6 5.7080 -2.5304 -0.2588 25 6 4.1809 -2.5294 -0.3537 26 1 -0.3633 -0.5138 0.8899 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 2.4416 1.5473 -1.0251 30 1 1.5792 2.0453 0.4501 31 1 3.1168 1.1575 0.5749 32 1 3.6813 0.0641 1.8603 33 1 3.6591 -1.6857 2.1855 34 1 5.8913 -0.7190 2.6673 35 1 5.9958 -0.1256 0.9921 36 1 8.1231 -1.9136 0.5502 37 1 10.7421 -4.9622 3.7829 38 1 8.7680 -3.8475 5.5939 39 1 10.3289 -7.6817 5.0227 40 1 11.1606 -6.0022 6.5735 41 1 6.1624 -7.1326 1.5611 42 1 6.3721 -4.6230 1.2498 43 1 6.1126 -1.7497 -0.9029 44 1 6.0908 -3.4998 -0.5777 45 1 3.8809 -2.7176 -1.3846 46 1 3.7763 -3.3100 0.2904 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17310140_14772022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:36:47 Heat of formation + Delta-G solvation = -98.097689 kcal Electronic energy + Delta-G solvation = -31606.677308 eV Core-core repulsion = 27330.906243 eV Total energy + Delta-G solvation = -4275.771065 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.105 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.44665 -39.71920 -39.36954 -37.89420 -37.67421 -36.58295 -36.55306 -35.34386 -31.99828 -31.83481 -30.72150 -28.83293 -27.57336 -27.11259 -24.58650 -23.95238 -23.79022 -21.69852 -21.48682 -20.33882 -19.94504 -19.27955 -18.39445 -18.03010 -17.84256 -17.59991 -17.13416 -17.02140 -16.70113 -16.53246 -15.95517 -15.62662 -15.46215 -15.25877 -15.14323 -14.95675 -14.52234 -14.33845 -14.12982 -14.09727 -13.86737 -13.83506 -13.66455 -13.53988 -13.34832 -13.26642 -12.90999 -12.87991 -12.79555 -12.77050 -12.57510 -12.45814 -12.29462 -12.15201 -12.08558 -11.77499 -11.54978 -11.45676 -11.03888 -10.65202 -10.54659 -10.17385 -9.81384 -9.71715 -5.23929 -0.59638 -0.50445 0.31347 0.61613 0.99748 1.11464 1.43566 1.63075 1.78132 1.96248 2.04177 2.82099 3.14600 3.29464 3.34737 3.44097 3.50363 3.68317 3.81627 3.93298 3.96352 4.00910 4.01486 4.07827 4.13318 4.21937 4.24550 4.29474 4.32460 4.33822 4.38340 4.53404 4.57234 4.59914 4.66981 4.70540 4.79809 4.84103 4.93712 4.97978 5.00813 5.06299 5.08836 5.20937 5.30540 5.41586 5.89098 6.30010 6.30395 7.17274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.624 5.624 3 C 0.070 3.930 4 C 0.517 3.483 5 O -0.535 6.535 6 C -0.109 4.109 7 H 0.096 0.904 8 C -0.110 4.110 9 C -0.136 4.136 10 C 0.145 3.855 11 H 0.090 0.910 12 N -1.118 6.118 13 S 2.720 3.280 14 O -0.942 6.942 15 O -0.948 6.948 16 C -0.663 4.663 17 C -0.100 4.100 18 C -0.070 4.070 19 O -0.532 6.532 20 Si 0.674 3.326 21 S 0.157 5.843 22 C -0.207 4.207 23 C -0.093 4.093 24 C -0.129 4.129 25 C -0.100 4.100 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.420 0.580 37 H 0.146 0.854 38 H 0.391 0.609 39 H -0.232 1.232 40 H -0.225 1.225 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 1.288 -1.097 3.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.358 5.358 3 C -0.073 4.073 4 C 0.305 3.695 5 O -0.411 6.411 6 C -0.130 4.130 7 H 0.115 0.885 8 C -0.148 4.148 9 C -0.175 4.175 10 C 0.039 3.961 11 H 0.108 0.892 12 N -0.877 5.877 13 S 2.805 3.195 14 O -0.932 6.932 15 O -0.938 6.938 16 C -0.761 4.761 17 C -0.220 4.220 18 C -0.182 4.182 19 O -0.338 6.338 20 Si 0.572 3.428 21 S 0.421 5.579 22 C -0.343 4.343 23 C -0.121 4.121 24 C -0.168 4.168 25 C -0.139 4.139 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.255 0.745 37 H 0.162 0.838 38 H 0.240 0.760 39 H -0.156 1.156 40 H -0.148 1.148 41 H 0.193 0.807 42 H 0.171 0.829 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.530 -0.766 0.213 1.724 hybrid contribution -0.518 1.165 -1.942 2.323 sum -2.048 0.400 -1.728 2.709 Atomic orbital electron populations 1.21657 0.78916 1.02421 1.02511 1.47805 1.07236 1.06525 1.74231 1.22010 0.97825 0.85172 1.02257 1.20704 0.90063 0.83067 0.75710 1.90712 1.70435 1.31127 1.48857 1.21425 0.91472 1.00717 0.99420 0.88540 1.21547 0.95920 1.03199 0.94169 1.22080 0.94616 0.97102 1.03709 1.21000 0.78285 0.98632 0.98227 0.89232 1.55788 1.14954 1.77738 1.39241 1.01486 0.72885 0.72627 0.72545 1.93573 1.75931 1.74916 1.48802 1.93589 1.29493 1.85622 1.85052 1.29931 1.08592 1.28426 1.09110 1.25004 1.00010 0.97219 0.99800 1.25093 0.96449 0.96223 1.00396 1.86567 1.55101 1.29595 1.62583 0.94716 0.89643 0.76402 0.82069 1.84508 1.27576 1.06449 1.39362 1.25909 1.04460 0.98938 1.04982 1.19886 0.97613 0.94620 1.00016 1.21939 0.96134 1.03304 0.95401 1.21363 0.93760 0.95859 1.02905 0.92033 0.90576 0.92008 0.92317 0.90574 0.90396 0.90520 0.90652 0.89448 0.90681 0.74544 0.83757 0.75988 1.15573 1.14769 0.80669 0.82870 0.90466 0.90480 0.90681 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.06 10.17 59.85 0.61 0.55 16 2 N -0.62 0.20 3.27 -189.52 -0.62 -0.42 16 3 C 0.07 -0.25 9.84 59.84 0.59 0.34 16 4 C 0.52 0.76 6.86 -10.98 -0.08 0.69 16 5 O -0.54 -2.92 16.02 5.56 0.09 -2.83 16 6 C -0.11 0.17 1.68 -91.77 -0.15 0.02 16 7 H 0.10 -0.32 7.25 -51.93 -0.38 -0.69 16 8 C -0.11 0.22 4.92 -26.73 -0.13 0.09 16 9 C -0.14 0.26 5.53 -26.73 -0.15 0.11 16 10 C 0.15 -0.28 1.54 -67.93 -0.10 -0.38 16 11 H 0.09 -0.18 6.05 -51.93 -0.31 -0.49 16 12 N -1.12 1.23 5.26 -4.89 -0.03 1.20 16 13 S 2.72 6.45 4.13 -107.50 -0.44 6.01 16 14 O -0.94 -3.86 16.26 -64.68 -1.05 -4.91 16 15 O -0.95 -5.35 16.93 -62.98 -1.07 -6.42 16 16 C -0.66 -0.99 5.72 -41.21 -0.24 -1.22 16 17 C -0.10 -0.13 5.77 -36.00 -0.21 -0.34 16 18 C -0.07 -0.08 2.35 36.00 0.08 0.01 16 19 O -0.53 -1.10 9.69 -60.52 -0.59 -1.69 16 20 Si 0.67 -0.68 31.10 -169.99 -5.29 -5.96 16 21 S 0.16 -0.04 20.88 -107.50 -2.24 -2.28 16 22 C -0.21 0.16 11.23 29.04 0.33 0.48 16 23 C -0.09 0.02 9.04 -41.21 -0.37 -0.36 16 24 C -0.13 0.40 5.22 -26.73 -0.14 0.26 16 25 C -0.10 0.15 4.64 -26.73 -0.12 0.03 16 26 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 27 H 0.08 -0.23 7.74 -51.93 -0.40 -0.64 16 28 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 29 H 0.06 -0.24 8.14 -51.93 -0.42 -0.66 16 30 H 0.08 -0.35 7.84 -51.93 -0.41 -0.75 16 31 H 0.08 -0.35 4.84 -51.93 -0.25 -0.60 16 32 H 0.08 -0.22 6.28 -51.93 -0.33 -0.55 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 34 H 0.09 -0.04 7.70 -51.93 -0.40 -0.44 16 35 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 36 H 0.42 -1.20 8.84 -34.47 -0.30 -1.51 16 37 H 0.15 0.22 7.96 -51.93 -0.41 -0.19 16 38 H 0.39 -0.63 8.51 45.56 0.39 -0.24 16 39 H -0.23 -0.05 7.11 56.52 0.40 0.35 16 40 H -0.22 -0.28 7.11 56.52 0.40 0.12 16 41 H 0.18 -0.54 8.06 -52.49 -0.42 -0.96 16 42 H 0.15 -0.35 4.56 -52.49 -0.24 -0.59 16 43 H 0.08 -0.30 8.14 -51.93 -0.42 -0.73 16 44 H 0.08 -0.28 7.50 -51.93 -0.39 -0.67 16 45 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 46 H 0.08 -0.03 7.92 -51.93 -0.41 -0.45 16 LS Contribution 380.30 15.07 5.73 5.73 Total: 0.00 -11.43 380.30 -12.02 -23.45 By element: Atomic # 1 Polarization: -5.74 SS G_CDS: -6.43 Total: -12.16 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.08 Total: 0.27 kcal Atomic # 7 Polarization: 1.43 SS G_CDS: -0.65 Total: 0.79 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -2.62 Total: -15.84 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: -5.29 Total: -5.96 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -2.69 Total: 3.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -11.43 -12.02 -23.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_14772022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.646 kcal (2) G-P(sol) polarization free energy of solvation -11.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds