Wall clock time and date at job start Mon Mar 8 2021 09:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46491 * 119.99855 * 2 1 4 4 C 1.34779 * 119.99658 * 179.97438 * 2 1 3 5 5 O 1.21275 * 120.00249 * 4.11486 * 4 2 1 6 6 C 1.50702 * 119.99616 * 184.11817 * 4 2 1 7 7 H 1.08998 * 109.46985 * 317.41325 * 6 4 2 8 8 C 1.52996 * 109.47242 * 77.41568 * 6 4 2 9 9 C 1.53009 * 109.46934 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46979 * 300.00042 * 9 8 6 11 11 H 1.08998 * 109.46972 * 299.99912 * 10 9 8 12 12 N 1.46495 * 109.47079 * 180.02562 * 10 9 8 13 13 S 1.65599 * 120.00165 * 95.52385 * 12 10 9 14 14 O 1.42094 * 106.40367 * 312.60155 * 13 12 10 15 15 O 1.42105 * 106.40268 * 179.67587 * 13 12 10 16 16 C 1.76204 * 107.21510 * 66.14006 * 13 12 10 17 17 C 1.33390 * 122.53880 * 164.27530 * 16 13 12 18 18 C 1.50698 * 125.20505 * 359.95278 * 17 16 13 19 19 O 1.42900 * 109.46825 * 38.94138 * 18 17 16 20 20 Si 1.86298 * 109.47253 * 158.94271 * 18 17 16 21 21 S 1.75882 * 109.59149 * 180.21856 * 17 16 13 22 22 C 1.75885 * 90.97213 * 359.68432 * 21 17 16 23 23 C 1.33388 * 109.58912 * 0.31498 * 22 21 17 24 24 C 1.52998 * 109.47035 * 59.99958 * 10 9 8 25 25 C 1.53000 * 109.47302 * 299.99718 * 24 10 9 26 26 H 1.08992 * 109.47004 * 240.00180 * 1 2 3 27 27 H 1.08994 * 109.46925 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46656 * 119.99804 * 1 2 3 29 29 H 1.08998 * 109.47330 * 265.97760 * 3 2 1 30 30 H 1.09005 * 109.47718 * 25.97664 * 3 2 1 31 31 H 1.08998 * 109.47240 * 145.97976 * 3 2 1 32 32 H 1.08998 * 109.47305 * 299.99849 * 8 6 4 33 33 H 1.08998 * 109.47329 * 59.99967 * 8 6 4 34 34 H 1.09001 * 109.46983 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46689 * 59.99957 * 9 8 6 36 36 H 0.96997 * 119.99774 * 275.52533 * 12 10 9 37 37 H 1.09002 * 109.46872 * 278.94736 * 18 17 16 38 38 H 0.96697 * 114.00159 * 65.91727 * 19 18 17 39 39 H 1.48501 * 109.99900 * 58.68470 * 20 18 17 40 40 H 1.48503 * 109.99723 * 179.97438 * 20 18 17 41 41 H 1.07997 * 125.20450 * 180.10410 * 22 21 17 42 42 H 1.08000 * 122.53340 * 179.73688 * 23 22 21 43 43 H 1.08998 * 109.47278 * 60.00142 * 24 10 9 44 44 H 1.08998 * 109.47018 * 180.02562 * 24 10 9 45 45 H 1.09001 * 109.47013 * 180.02562 * 25 24 10 46 46 H 1.08998 * 109.47300 * 300.00411 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5349 -2.2162 -0.0744 6 6 3.6430 -1.1689 0.0943 7 1 4.0480 -0.3885 -0.5500 8 6 4.0641 -0.9053 1.5413 9 6 5.5913 -0.9063 1.6363 10 6 6.1292 -2.2668 1.1883 11 1 5.7245 -3.0475 1.8324 12 7 7.5913 -2.2680 1.2798 13 16 8.3360 -2.8746 2.6288 14 8 7.6670 -2.3063 3.7462 15 8 9.7337 -2.7416 2.4096 16 6 8.0021 -4.6041 2.6757 17 6 8.6914 -5.4472 3.4460 18 6 9.8236 -5.0594 4.3618 19 8 9.5222 -3.8117 4.9898 20 14 10.0464 -6.3726 5.6643 21 16 8.0815 -7.0819 3.2237 22 6 6.8834 -6.5101 2.0700 23 6 7.0044 -5.1906 1.9164 24 6 5.7080 -2.5304 -0.2588 25 6 4.1809 -2.5294 -0.3537 26 1 -0.3633 -0.5138 0.8899 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 2.4416 1.5473 -1.0251 30 1 1.5792 2.0453 0.4501 31 1 3.1168 1.1575 0.5749 32 1 3.6813 0.0641 1.8603 33 1 3.6591 -1.6857 2.1855 34 1 5.8913 -0.7190 2.6673 35 1 5.9958 -0.1256 0.9921 36 1 8.1231 -1.9136 0.5502 37 1 10.7421 -4.9622 3.7829 38 1 8.7680 -3.8475 5.5939 39 1 10.3289 -7.6817 5.0227 40 1 11.1606 -6.0022 6.5735 41 1 6.1624 -7.1326 1.5611 42 1 6.3721 -4.6230 1.2498 43 1 6.1126 -1.7497 -0.9029 44 1 6.0908 -3.4998 -0.5777 45 1 3.8809 -2.7176 -1.3846 46 1 3.7763 -3.3100 0.2904 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17310140_14772022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:36:46 Heat of formation + Delta-G solvation = -101.734329 kcal Electronic energy + Delta-G solvation = -31606.835005 eV Core-core repulsion = 27330.906243 eV Total energy + Delta-G solvation = -4275.928762 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.105 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.42775 -39.73419 -39.33334 -38.14600 -37.73021 -36.80733 -36.60744 -35.30030 -31.88885 -31.79596 -30.64897 -28.67119 -27.60377 -27.02604 -24.60067 -23.82227 -23.67259 -21.73019 -21.36133 -20.37704 -19.94516 -19.31217 -18.49920 -18.02000 -17.83086 -17.60963 -17.16559 -17.03830 -16.67767 -16.59905 -16.06884 -15.60166 -15.47590 -15.12737 -15.07240 -14.86705 -14.49136 -14.37516 -14.13446 -14.04782 -13.84316 -13.71322 -13.51382 -13.49908 -13.38493 -13.19396 -13.12718 -13.04247 -12.81334 -12.71328 -12.65173 -12.35783 -12.22961 -12.14712 -12.02275 -11.67963 -11.52514 -11.35019 -11.07877 -10.71445 -10.46637 -10.18310 -9.78949 -9.69327 -5.18262 -0.71759 -0.53799 0.31551 0.62256 1.01850 1.12335 1.47041 1.57453 1.79215 1.96313 2.08383 2.69248 3.12981 3.28390 3.43455 3.58716 3.61254 3.68250 3.94265 4.01089 4.07970 4.12636 4.16044 4.19188 4.27536 4.31609 4.38118 4.42755 4.46381 4.50148 4.54490 4.61774 4.72285 4.79075 4.84034 4.86196 4.89222 4.93040 5.06837 5.10425 5.15307 5.20407 5.24318 5.35548 5.46092 5.52301 6.04372 6.34695 6.37953 7.14044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.625 5.625 3 C 0.063 3.937 4 C 0.507 3.493 5 O -0.586 6.586 6 C -0.102 4.102 7 H 0.121 0.879 8 C -0.105 4.105 9 C -0.135 4.135 10 C 0.140 3.860 11 H 0.088 0.912 12 N -1.105 6.105 13 S 2.729 3.271 14 O -0.967 6.967 15 O -0.987 6.987 16 C -0.671 4.671 17 C -0.118 4.118 18 C -0.090 4.090 19 O -0.552 6.552 20 Si 0.756 3.244 21 S 0.174 5.826 22 C -0.205 4.205 23 C -0.104 4.104 24 C -0.121 4.121 25 C -0.099 4.099 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.429 0.571 37 H 0.132 0.868 38 H 0.402 0.598 39 H -0.243 1.243 40 H -0.259 1.259 41 H 0.201 0.799 42 H 0.172 0.828 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 1.665 -1.931 4.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.357 5.357 3 C -0.078 4.078 4 C 0.297 3.703 5 O -0.466 6.466 6 C -0.123 4.123 7 H 0.139 0.861 8 C -0.143 4.143 9 C -0.174 4.174 10 C 0.034 3.966 11 H 0.106 0.894 12 N -0.868 5.868 13 S 2.816 3.184 14 O -0.957 6.957 15 O -0.977 6.977 16 C -0.771 4.771 17 C -0.239 4.239 18 C -0.199 4.199 19 O -0.361 6.361 20 Si 0.655 3.345 21 S 0.438 5.562 22 C -0.341 4.341 23 C -0.131 4.131 24 C -0.159 4.159 25 C -0.138 4.138 26 H 0.068 0.932 27 H 0.122 0.878 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.267 0.733 37 H 0.149 0.851 38 H 0.254 0.746 39 H -0.168 1.168 40 H -0.183 1.183 41 H 0.218 0.782 42 H 0.189 0.811 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.912 -0.315 -0.637 2.040 hybrid contribution -0.457 1.081 -1.714 2.078 sum -2.369 0.766 -2.351 3.425 Atomic orbital electron populations 1.21708 0.79123 1.03800 1.01274 1.47997 1.07530 1.07289 1.72905 1.22253 0.98307 0.83896 1.03371 1.21293 0.91306 0.82828 0.74906 1.90681 1.71583 1.32950 1.51391 1.21443 0.89373 1.01480 1.00049 0.86121 1.21497 0.95806 1.03348 0.93647 1.22069 0.94544 0.97586 1.03212 1.21150 0.77427 0.98858 0.99210 0.89399 1.55473 1.15354 1.77347 1.38581 1.00852 0.71970 0.72908 0.72710 1.93537 1.76025 1.75751 1.50347 1.93535 1.32042 1.86423 1.85716 1.29859 1.09542 1.27788 1.09949 1.25128 1.00303 0.98320 1.00102 1.25425 0.96156 0.96857 1.01506 1.86527 1.55899 1.30530 1.63125 0.93761 0.87705 0.73939 0.79141 1.84415 1.27383 1.05066 1.39325 1.26280 1.04366 0.99004 1.04422 1.20091 0.97572 0.95140 1.00308 1.21896 0.94859 1.04569 0.94623 1.21326 0.94716 0.95539 1.02177 0.93226 0.87836 0.93391 0.91241 0.89153 0.89190 0.89353 0.92133 0.90999 0.88856 0.73344 0.85067 0.74590 1.16819 1.18348 0.78196 0.81126 0.88765 0.89495 0.91214 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.09 10.17 127.77 1.30 1.21 16 2 N -0.62 0.58 3.27 -871.90 -2.85 -2.27 16 3 C 0.06 -0.56 9.84 127.77 1.26 0.70 16 4 C 0.51 1.72 6.86 87.66 0.60 2.32 16 5 O -0.59 -7.38 16.02 -3.01 -0.05 -7.43 16 6 C -0.10 0.39 1.68 -11.54 -0.02 0.37 16 7 H 0.12 -1.05 7.25 -2.39 -0.02 -1.06 16 8 C -0.10 0.46 4.92 30.60 0.15 0.62 16 9 C -0.13 0.61 5.53 30.60 0.17 0.77 16 10 C 0.14 -0.61 1.54 44.99 0.07 -0.54 16 11 H 0.09 -0.34 6.05 -2.39 -0.01 -0.36 16 12 N -1.11 2.56 5.26 -169.40 -0.89 1.67 16 13 S 2.73 15.92 4.13 -56.49 -0.23 15.69 16 14 O -0.97 -9.28 16.26 -120.83 -1.96 -11.24 16 15 O -0.99 -12.88 16.93 -122.45 -2.07 -14.95 16 16 C -0.67 -2.40 5.72 21.21 0.12 -2.27 16 17 C -0.12 -0.39 5.77 24.59 0.14 -0.25 16 18 C -0.09 -0.33 2.35 71.24 0.17 -0.16 16 19 O -0.55 -3.29 9.69 -124.80 -1.21 -4.50 16 20 Si 0.76 -1.09 31.10 68.60 2.13 1.04 16 21 S 0.17 -0.15 20.88 -56.49 -1.18 -1.33 16 22 C -0.21 0.51 11.23 66.72 0.75 1.26 16 23 C -0.10 0.08 9.04 21.21 0.19 0.27 16 24 C -0.12 0.90 5.22 30.59 0.16 1.06 16 25 C -0.10 0.32 4.64 30.60 0.14 0.47 16 26 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.10 -0.73 7.74 -2.39 -0.02 -0.75 16 28 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.07 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H 0.09 -1.01 7.84 -2.38 -0.02 -1.03 16 31 H 0.09 -1.00 4.84 -2.39 -0.01 -1.01 16 32 H 0.09 -0.60 6.28 -2.39 -0.02 -0.62 16 33 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.07 -0.05 7.70 -2.39 -0.02 -0.07 16 35 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H 0.43 -2.68 8.84 -96.75 -0.86 -3.54 16 37 H 0.13 0.70 7.96 -2.39 -0.02 0.68 16 38 H 0.40 -0.61 8.51 -74.06 -0.63 -1.24 16 39 H -0.24 -0.07 7.11 99.48 0.71 0.64 16 40 H -0.26 -0.97 7.11 99.48 0.71 -0.27 16 41 H 0.20 -1.62 8.06 -2.91 -0.02 -1.64 16 42 H 0.17 -0.90 4.56 -2.91 -0.01 -0.91 16 43 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 44 H 0.09 -0.77 7.50 -2.39 -0.02 -0.79 16 45 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.06 0.00 7.92 -2.39 -0.02 -0.02 16 Total: 0.00 -28.59 380.30 -3.53 -32.12 By element: Atomic # 1 Polarization: -14.20 SS G_CDS: -0.41 Total: -14.62 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.20 Total: 5.82 kcal Atomic # 7 Polarization: 3.15 SS G_CDS: -3.75 Total: -0.60 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -5.30 Total: -38.12 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: 2.13 Total: 1.04 kcal Atomic # 16 Polarization: 15.77 SS G_CDS: -1.41 Total: 14.35 kcal Total: -28.59 -3.53 -32.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_14772022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.614 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds