Wall clock time and date at job start Mon Mar 8 2021 09:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00187 * 2 1 4 4 C 1.34780 * 119.99871 * 180.02562 * 2 1 3 5 5 O 1.21278 * 120.00042 * 3.70206 * 4 2 1 6 6 C 1.50698 * 119.99784 * 183.70635 * 4 2 1 7 7 H 1.08997 * 109.47042 * 322.99050 * 6 4 2 8 8 C 1.53004 * 109.47127 * 82.99085 * 6 4 2 9 9 C 1.52996 * 109.47074 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47278 * 300.00094 * 9 8 6 11 11 H 1.09005 * 109.46806 * 299.99872 * 10 9 8 12 12 N 1.46501 * 109.47368 * 180.02562 * 10 9 8 13 13 S 1.65592 * 120.00253 * 94.99715 * 12 10 9 14 14 O 1.42104 * 106.40324 * 178.54208 * 13 12 10 15 15 O 1.42102 * 106.40246 * 311.46031 * 13 12 10 16 16 C 1.76204 * 107.21909 * 65.00132 * 13 12 10 17 17 C 1.33387 * 122.53957 * 90.02335 * 16 13 12 18 18 S 1.75886 * 109.59211 * 180.02562 * 17 16 13 19 19 C 1.75883 * 90.97016 * 359.97438 * 18 17 16 20 20 C 1.50706 * 125.20146 * 179.97438 * 19 18 17 21 21 O 1.42900 * 109.46661 * 120.02682 * 20 19 18 22 22 Si 1.86302 * 109.46917 * 0.03059 * 20 19 18 23 23 C 1.33386 * 109.59666 * 359.73373 * 19 18 17 24 24 C 1.52998 * 109.47153 * 59.99618 * 10 9 8 25 25 C 1.52996 * 109.47340 * 300.00344 * 24 10 9 26 26 H 1.09000 * 109.47124 * 270.00068 * 1 2 3 27 27 H 1.08993 * 109.47380 * 29.99729 * 1 2 3 28 28 H 1.08998 * 109.47331 * 149.99966 * 1 2 3 29 29 H 1.08994 * 109.47470 * 174.65634 * 3 2 1 30 30 H 1.09002 * 109.46871 * 294.65779 * 3 2 1 31 31 H 1.09005 * 109.47307 * 54.65161 * 3 2 1 32 32 H 1.08998 * 109.47073 * 299.99928 * 8 6 4 33 33 H 1.08997 * 109.47188 * 60.00055 * 8 6 4 34 34 H 1.09003 * 109.47478 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47097 * 59.99787 * 9 8 6 36 36 H 0.96999 * 119.99786 * 274.99776 * 12 10 9 37 37 H 1.08002 * 125.20195 * 359.97438 * 17 16 13 38 38 H 1.08995 * 109.47094 * 240.02578 * 20 19 18 39 39 H 0.96703 * 114.00393 * 299.99972 * 21 20 19 40 40 H 1.48499 * 109.99504 * 180.02562 * 22 20 19 41 41 H 1.48499 * 109.99747 * 301.31113 * 22 20 19 42 42 H 1.07999 * 122.54754 * 180.24385 * 23 19 18 43 43 H 1.08998 * 109.47081 * 180.02562 * 24 10 9 44 44 H 1.09005 * 109.47058 * 60.00408 * 24 10 9 45 45 H 1.08997 * 109.46988 * 299.99796 * 25 24 10 46 46 H 1.08996 * 109.47128 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5344 -2.2164 -0.0688 6 6 3.6435 -1.1686 0.0838 7 1 4.0401 -0.3285 -0.4862 8 6 4.0724 -1.0401 1.5469 9 6 5.5999 -1.0421 1.6326 10 6 6.1414 -2.3516 1.0556 11 1 5.7444 -3.1915 1.6258 12 7 7.6041 -2.3539 1.1382 13 16 8.3596 -3.0692 2.4264 14 8 9.7557 -2.9352 2.1979 15 8 7.7125 -2.5802 3.5932 16 6 8.0057 -4.7936 2.3468 17 6 8.7811 -5.6554 1.6871 18 16 8.1143 -7.2767 1.8289 19 6 6.7810 -6.6752 2.8057 20 6 5.6710 -7.5205 3.3755 21 8 5.6744 -7.4135 4.8005 22 14 5.9310 -9.2991 2.8857 23 6 6.9054 -5.3573 2.9695 24 6 5.7125 -2.4802 -0.4074 25 6 4.1849 -2.4782 -0.4931 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 3.2653 1.0718 0.0957 30 1 2.0079 1.7977 -0.9340 31 1 1.8643 1.8807 0.8382 32 1 3.6863 -0.1074 1.9581 33 1 3.6758 -1.8802 2.1170 34 1 5.9056 -0.9510 2.6749 35 1 5.9970 -0.2022 1.0624 36 1 8.1300 -1.9363 0.4382 37 1 9.6803 -5.3970 1.1476 38 1 4.7137 -7.1729 2.9873 39 1 6.4976 -7.7063 5.2150 40 1 4.8425 -10.1430 3.4410 41 1 5.9613 -9.4191 1.4059 42 1 6.1989 -4.7736 3.5409 43 1 6.0978 -3.4133 -0.8183 44 1 6.1095 -1.6403 -0.9776 45 1 3.7879 -3.3180 0.0770 46 1 3.8794 -2.5693 -1.5354 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17310140_15065232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:36:52 Heat of formation + Delta-G solvation = -102.264660 kcal Electronic energy + Delta-G solvation = -31087.011118 eV Core-core repulsion = 26811.059359 eV Total energy + Delta-G solvation = -4275.951759 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.105 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.45234 -39.56688 -39.31587 -38.17746 -37.56179 -36.84515 -36.56775 -35.37748 -31.97064 -31.84913 -30.78887 -28.85020 -27.27446 -27.07281 -24.97916 -23.96828 -23.81863 -21.56263 -21.36681 -20.28849 -19.93137 -19.23706 -18.55759 -18.08086 -17.95571 -17.76044 -17.40421 -17.05897 -16.71757 -16.38053 -16.02454 -15.51383 -15.40309 -15.27486 -15.00243 -14.91592 -14.50247 -14.28596 -14.22826 -14.16027 -13.94525 -13.72971 -13.62125 -13.56380 -13.36483 -13.33991 -13.12743 -13.07210 -13.01387 -12.91671 -12.52870 -12.46498 -12.32986 -12.22334 -12.17061 -11.79218 -11.60056 -11.47130 -10.76780 -10.65030 -10.55768 -10.20388 -9.90036 -9.73708 -5.25891 -0.76307 -0.50104 0.27992 0.54747 0.95380 1.12876 1.48149 1.61499 1.80808 1.95024 2.02667 2.71010 3.19088 3.33154 3.37391 3.45448 3.51154 3.59310 3.79272 3.81316 3.87917 3.99643 4.03947 4.07328 4.19295 4.21695 4.26170 4.31423 4.33235 4.34936 4.36563 4.58267 4.59284 4.60575 4.63861 4.69140 4.85566 4.86863 4.92183 4.96125 5.01114 5.03557 5.07449 5.19214 5.29288 5.39246 5.82885 6.28909 6.40086 7.16007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.623 5.623 3 C 0.070 3.930 4 C 0.516 3.484 5 O -0.536 6.536 6 C -0.111 4.111 7 H 0.097 0.903 8 C -0.107 4.107 9 C -0.137 4.137 10 C 0.152 3.848 11 H 0.087 0.913 12 N -1.111 6.111 13 S 2.707 3.293 14 O -0.956 6.956 15 O -0.945 6.945 16 C -0.688 4.688 17 C -0.083 4.083 18 S 0.159 5.841 19 C -0.227 4.227 20 C -0.027 4.027 21 O -0.532 6.532 22 Si 0.654 3.346 23 C -0.046 4.046 24 C -0.124 4.124 25 C -0.100 4.100 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.420 0.580 37 H 0.186 0.814 38 H 0.127 0.873 39 H 0.382 0.618 40 H -0.230 1.230 41 H -0.237 1.237 42 H 0.157 0.843 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.241 1.633 -3.074 3.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.357 5.357 3 C -0.073 4.073 4 C 0.305 3.695 5 O -0.413 6.413 6 C -0.132 4.132 7 H 0.115 0.885 8 C -0.146 4.146 9 C -0.176 4.176 10 C 0.045 3.955 11 H 0.105 0.895 12 N -0.870 5.870 13 S 2.794 3.206 14 O -0.946 6.946 15 O -0.935 6.935 16 C -0.788 4.788 17 C -0.222 4.222 18 S 0.423 5.577 19 C -0.345 4.345 20 C -0.141 4.141 21 O -0.337 6.337 22 Si 0.553 3.447 23 C -0.075 4.075 24 C -0.163 4.163 25 C -0.139 4.139 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.255 0.745 37 H 0.203 0.797 38 H 0.144 0.856 39 H 0.229 0.771 40 H -0.153 1.153 41 H -0.161 1.161 42 H 0.175 0.825 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.784 -0.551 -3.398 3.530 hybrid contribution -0.691 1.658 -0.270 1.817 sum 0.093 1.107 -3.668 3.832 Atomic orbital electron populations 1.21654 0.78978 1.03334 1.02075 1.47782 1.07303 1.06521 1.74126 1.21973 0.97727 0.85236 1.02380 1.20739 0.90096 0.83161 0.75549 1.90710 1.70377 1.31108 1.49067 1.21461 0.91487 1.01025 0.99215 0.88481 1.21483 0.95831 1.03528 0.93765 1.22092 0.94647 0.97631 1.03214 1.20871 0.77909 0.98801 0.97874 0.89490 1.55650 1.15155 1.72558 1.43663 1.01690 0.72873 0.72899 0.73169 1.93616 1.29641 1.86014 1.85379 1.93615 1.76467 1.77812 1.45636 1.30049 1.06932 1.27473 1.14307 1.25903 1.01447 0.96309 0.98500 1.84396 1.17338 1.08384 1.47626 1.25086 1.02812 0.98487 1.08102 1.24461 0.97165 1.07914 0.84533 1.86548 1.41942 1.89048 1.16190 0.95087 0.90474 0.76406 0.82714 1.19626 0.96197 0.93886 0.97761 1.21859 0.95934 1.03366 0.95130 1.21363 0.93966 0.96527 1.02037 0.92567 0.91109 0.90381 0.89775 0.91919 0.91509 0.90692 0.90682 0.89470 0.90713 0.74515 0.79712 0.85633 0.77060 1.15337 1.16106 0.82532 0.90573 0.90725 0.90302 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.03 10.51 59.85 0.63 0.60 16 2 N -0.62 -0.01 3.27 -189.52 -0.62 -0.63 16 3 C 0.07 -0.23 10.25 59.85 0.61 0.38 16 4 C 0.52 0.94 6.80 -10.99 -0.07 0.86 16 5 O -0.54 -3.14 15.62 5.56 0.09 -3.05 16 6 C -0.11 0.15 1.66 -91.77 -0.15 -0.01 16 7 H 0.10 -0.32 6.36 -51.93 -0.33 -0.65 16 8 C -0.11 0.18 5.01 -26.73 -0.13 0.04 16 9 C -0.14 0.27 5.53 -26.73 -0.15 0.12 16 10 C 0.15 -0.31 2.65 -67.93 -0.18 -0.49 16 11 H 0.09 -0.16 7.41 -51.93 -0.38 -0.54 16 12 N -1.11 2.38 5.47 -4.89 -0.03 2.35 16 13 S 2.71 2.31 5.71 -107.50 -0.61 1.69 16 14 O -0.96 -3.31 17.64 -57.17 -1.01 -4.31 16 15 O -0.95 -3.49 16.89 -57.17 -0.97 -4.46 16 16 C -0.69 -0.16 5.72 -41.21 -0.24 -0.40 16 17 C -0.08 0.07 10.70 29.04 0.31 0.38 16 18 S 0.16 -0.19 20.58 -107.50 -2.21 -2.41 16 19 C -0.23 0.04 5.72 -36.00 -0.21 -0.17 16 20 C -0.03 0.01 2.96 36.01 0.11 0.12 16 21 O -0.53 -0.05 12.86 -35.23 -0.45 -0.50 16 22 Si 0.65 -0.82 30.97 -169.99 -5.26 -6.09 16 23 C -0.05 -0.03 9.12 -41.21 -0.38 -0.40 16 24 C -0.12 0.36 5.45 -26.73 -0.15 0.21 16 25 C -0.10 0.11 4.71 -26.73 -0.13 -0.02 16 26 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 27 H 0.07 -0.16 8.07 -51.93 -0.42 -0.58 16 28 H 0.08 0.10 7.37 -51.93 -0.38 -0.28 16 29 H 0.08 -0.38 4.95 -51.93 -0.26 -0.64 16 30 H 0.06 -0.25 8.14 -51.93 -0.42 -0.67 16 31 H 0.07 -0.26 8.14 -51.93 -0.42 -0.69 16 32 H 0.07 -0.18 7.53 -51.93 -0.39 -0.57 16 33 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 34 H 0.09 -0.05 7.64 -51.93 -0.40 -0.44 16 35 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 36 H 0.42 -1.73 8.84 -34.46 -0.30 -2.03 16 37 H 0.19 -0.51 8.00 -52.49 -0.42 -0.93 16 38 H 0.13 -0.06 7.96 -51.93 -0.41 -0.47 16 39 H 0.38 -1.39 8.70 45.56 0.40 -1.00 16 40 H -0.23 -0.34 7.11 56.52 0.40 0.06 16 41 H -0.24 -0.14 7.11 56.52 0.40 0.26 16 42 H 0.16 0.08 7.96 -52.49 -0.42 -0.34 16 43 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 44 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 45 H 0.08 0.04 7.88 -51.93 -0.41 -0.37 16 46 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 LS Contribution 393.83 15.07 5.93 5.93 Total: 0.00 -11.56 393.83 -11.97 -23.53 By element: Atomic # 1 Polarization: -6.58 SS G_CDS: -6.71 Total: -13.29 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.12 Total: 1.23 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -0.65 Total: 1.72 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -2.34 Total: -12.33 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: -5.26 Total: -6.09 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.83 Total: -0.71 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -11.56 -11.97 -23.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_15065232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.736 kcal (2) G-P(sol) polarization free energy of solvation -11.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds