Wall clock time and date at job start Mon Mar 8 2021 09:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00187 * 2 1 4 4 C 1.34780 * 119.99871 * 180.02562 * 2 1 3 5 5 O 1.21278 * 120.00042 * 3.70206 * 4 2 1 6 6 C 1.50698 * 119.99784 * 183.70635 * 4 2 1 7 7 H 1.08997 * 109.47042 * 322.99050 * 6 4 2 8 8 C 1.53004 * 109.47127 * 82.99085 * 6 4 2 9 9 C 1.52996 * 109.47074 * 179.97438 * 8 6 4 10 10 C 1.53003 * 109.47278 * 300.00094 * 9 8 6 11 11 H 1.09005 * 109.46806 * 299.99872 * 10 9 8 12 12 N 1.46501 * 109.47368 * 180.02562 * 10 9 8 13 13 S 1.65592 * 120.00253 * 94.99715 * 12 10 9 14 14 O 1.42104 * 106.40324 * 178.54208 * 13 12 10 15 15 O 1.42102 * 106.40246 * 311.46031 * 13 12 10 16 16 C 1.76204 * 107.21909 * 65.00132 * 13 12 10 17 17 C 1.33387 * 122.53957 * 90.02335 * 16 13 12 18 18 S 1.75886 * 109.59211 * 180.02562 * 17 16 13 19 19 C 1.75883 * 90.97016 * 359.97438 * 18 17 16 20 20 C 1.50706 * 125.20146 * 179.97438 * 19 18 17 21 21 O 1.42900 * 109.46661 * 120.02682 * 20 19 18 22 22 Si 1.86302 * 109.46917 * 0.03059 * 20 19 18 23 23 C 1.33386 * 109.59666 * 359.73373 * 19 18 17 24 24 C 1.52998 * 109.47153 * 59.99618 * 10 9 8 25 25 C 1.52996 * 109.47340 * 300.00344 * 24 10 9 26 26 H 1.09000 * 109.47124 * 270.00068 * 1 2 3 27 27 H 1.08993 * 109.47380 * 29.99729 * 1 2 3 28 28 H 1.08998 * 109.47331 * 149.99966 * 1 2 3 29 29 H 1.08994 * 109.47470 * 174.65634 * 3 2 1 30 30 H 1.09002 * 109.46871 * 294.65779 * 3 2 1 31 31 H 1.09005 * 109.47307 * 54.65161 * 3 2 1 32 32 H 1.08998 * 109.47073 * 299.99928 * 8 6 4 33 33 H 1.08997 * 109.47188 * 60.00055 * 8 6 4 34 34 H 1.09003 * 109.47478 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47097 * 59.99787 * 9 8 6 36 36 H 0.96999 * 119.99786 * 274.99776 * 12 10 9 37 37 H 1.08002 * 125.20195 * 359.97438 * 17 16 13 38 38 H 1.08995 * 109.47094 * 240.02578 * 20 19 18 39 39 H 0.96703 * 114.00393 * 299.99972 * 21 20 19 40 40 H 1.48499 * 109.99504 * 180.02562 * 22 20 19 41 41 H 1.48499 * 109.99747 * 301.31113 * 22 20 19 42 42 H 1.07999 * 122.54754 * 180.24385 * 23 19 18 43 43 H 1.08998 * 109.47081 * 180.02562 * 24 10 9 44 44 H 1.09005 * 109.47058 * 60.00408 * 24 10 9 45 45 H 1.08997 * 109.46988 * 299.99796 * 25 24 10 46 46 H 1.08996 * 109.47128 * 179.97438 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5344 -2.2164 -0.0688 6 6 3.6435 -1.1686 0.0838 7 1 4.0401 -0.3285 -0.4862 8 6 4.0724 -1.0401 1.5469 9 6 5.5999 -1.0421 1.6326 10 6 6.1414 -2.3516 1.0556 11 1 5.7444 -3.1915 1.6258 12 7 7.6041 -2.3539 1.1382 13 16 8.3596 -3.0692 2.4264 14 8 9.7557 -2.9352 2.1979 15 8 7.7125 -2.5802 3.5932 16 6 8.0057 -4.7936 2.3468 17 6 8.7811 -5.6554 1.6871 18 16 8.1143 -7.2767 1.8289 19 6 6.7810 -6.6752 2.8057 20 6 5.6710 -7.5205 3.3755 21 8 5.6744 -7.4135 4.8005 22 14 5.9310 -9.2991 2.8857 23 6 6.9054 -5.3573 2.9695 24 6 5.7125 -2.4802 -0.4074 25 6 4.1849 -2.4782 -0.4931 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 3.2653 1.0718 0.0957 30 1 2.0079 1.7977 -0.9340 31 1 1.8643 1.8807 0.8382 32 1 3.6863 -0.1074 1.9581 33 1 3.6758 -1.8802 2.1170 34 1 5.9056 -0.9510 2.6749 35 1 5.9970 -0.2022 1.0624 36 1 8.1300 -1.9363 0.4382 37 1 9.6803 -5.3970 1.1476 38 1 4.7137 -7.1729 2.9873 39 1 6.4976 -7.7063 5.2150 40 1 4.8425 -10.1430 3.4410 41 1 5.9613 -9.4191 1.4059 42 1 6.1989 -4.7736 3.5409 43 1 6.0978 -3.4133 -0.8183 44 1 6.1095 -1.6403 -0.9776 45 1 3.7879 -3.3180 0.0770 46 1 3.8794 -2.5693 -1.5354 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17310140_15065232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:36:51 Heat of formation + Delta-G solvation = -107.028150 kcal Electronic energy + Delta-G solvation = -31087.217678 eV Core-core repulsion = 26811.059359 eV Total energy + Delta-G solvation = -4276.158319 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.105 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46934 -39.54544 -39.27245 -38.33328 -37.54629 -37.01785 -36.63194 -35.31166 -31.85273 -31.81252 -30.71424 -28.71600 -27.24910 -27.01656 -24.96862 -23.86482 -23.70905 -21.48190 -21.33007 -20.29096 -19.93320 -19.20118 -18.59709 -18.08608 -17.92840 -17.74033 -17.39080 -17.05889 -16.71537 -16.36845 -16.06976 -15.47925 -15.32312 -15.17277 -14.97380 -14.88204 -14.47959 -14.29535 -14.16180 -14.14264 -13.95100 -13.70120 -13.48955 -13.46403 -13.37506 -13.33511 -13.24803 -13.15067 -12.97168 -12.94742 -12.58185 -12.36631 -12.24606 -12.20596 -12.08676 -11.72895 -11.53319 -11.37107 -10.74844 -10.73271 -10.45406 -10.16947 -9.84813 -9.74294 -5.20082 -0.78705 -0.47797 0.32685 0.57723 0.94413 1.16665 1.51234 1.52289 1.82690 1.99139 2.06079 2.66993 3.19293 3.39703 3.43823 3.60086 3.62373 3.64972 3.89356 3.93154 4.03617 4.12260 4.17505 4.21427 4.27881 4.35139 4.35659 4.40708 4.45021 4.47615 4.50746 4.62984 4.71658 4.77840 4.82783 4.86414 4.89050 4.89552 5.02541 5.06464 5.09154 5.17442 5.19039 5.32027 5.41766 5.46553 6.07697 6.30273 6.61618 7.09414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.624 5.624 3 C 0.063 3.937 4 C 0.507 3.493 5 O -0.589 6.589 6 C -0.103 4.103 7 H 0.127 0.873 8 C -0.103 4.103 9 C -0.135 4.135 10 C 0.148 3.852 11 H 0.079 0.921 12 N -1.096 6.096 13 S 2.723 3.277 14 O -0.983 6.983 15 O -0.979 6.979 16 C -0.696 4.696 17 C -0.084 4.084 18 S 0.190 5.810 19 C -0.235 4.235 20 C -0.035 4.035 21 O -0.549 6.549 22 Si 0.731 3.269 23 C -0.058 4.058 24 C -0.115 4.115 25 C -0.099 4.099 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.432 0.568 37 H 0.206 0.794 38 H 0.120 0.880 39 H 0.397 0.603 40 H -0.270 1.270 41 H -0.258 1.258 42 H 0.149 0.851 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.054 0.946 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 2.680 -4.153 5.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.357 5.357 3 C -0.078 4.078 4 C 0.296 3.704 5 O -0.470 6.470 6 C -0.124 4.124 7 H 0.145 0.855 8 C -0.142 4.142 9 C -0.174 4.174 10 C 0.041 3.959 11 H 0.097 0.903 12 N -0.859 5.859 13 S 2.811 3.189 14 O -0.973 6.973 15 O -0.969 6.969 16 C -0.797 4.797 17 C -0.223 4.223 18 S 0.454 5.546 19 C -0.353 4.353 20 C -0.148 4.148 21 O -0.357 6.357 22 Si 0.633 3.367 23 C -0.087 4.087 24 C -0.154 4.154 25 C -0.138 4.138 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.270 0.730 37 H 0.223 0.777 38 H 0.137 0.863 39 H 0.247 0.753 40 H -0.196 1.196 41 H -0.183 1.183 42 H 0.166 0.834 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.174 0.568 -4.467 5.000 hybrid contribution -1.201 1.325 0.060 1.789 sum 0.972 1.893 -4.407 4.894 Atomic orbital electron populations 1.21695 0.79245 1.03369 1.02120 1.47985 1.07581 1.07312 1.72790 1.22225 0.98326 0.83773 1.03522 1.21351 0.91398 0.82901 0.74748 1.90680 1.71568 1.33025 1.51678 1.21479 0.89306 1.01912 0.99691 0.85547 1.21437 0.96129 1.03242 0.93357 1.22079 0.94189 0.98388 1.02719 1.20943 0.77636 0.98748 0.98559 0.90306 1.55310 1.15096 1.72216 1.43238 1.00912 0.72022 0.72948 0.72971 1.93574 1.31335 1.86569 1.85819 1.93573 1.76892 1.78706 1.47732 1.29862 1.07372 1.27088 1.15335 1.26233 1.01731 0.96406 0.97889 1.84271 1.16111 1.07633 1.46579 1.25177 1.03361 0.98407 1.08323 1.24621 0.96997 1.08725 0.84421 1.86509 1.43343 1.89327 1.16531 0.94219 0.88669 0.73758 0.80098 1.19650 0.96506 0.94302 0.98275 1.21806 0.94370 1.04645 0.94560 1.21324 0.95243 0.95970 1.01293 0.92561 0.88712 0.92655 0.88229 0.90673 0.90460 0.89602 0.92757 0.90966 0.88445 0.73035 0.77734 0.86260 0.75293 1.19558 1.18318 0.83367 0.90098 0.88482 0.92677 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.01 10.51 127.77 1.34 1.35 16 2 N -0.62 -0.05 3.27 -871.91 -2.85 -2.90 16 3 C 0.06 -0.52 10.25 127.77 1.31 0.79 16 4 C 0.51 2.34 6.80 87.66 0.60 2.94 16 5 O -0.59 -8.42 15.62 -3.02 -0.05 -8.47 16 6 C -0.10 0.29 1.66 -11.54 -0.02 0.27 16 7 H 0.13 -1.12 6.36 -2.39 -0.02 -1.13 16 8 C -0.10 0.32 5.01 30.59 0.15 0.47 16 9 C -0.13 0.58 5.53 30.59 0.17 0.75 16 10 C 0.15 -0.61 2.65 44.99 0.12 -0.49 16 11 H 0.08 -0.18 7.41 -2.38 -0.02 -0.20 16 12 N -1.10 5.17 5.47 -169.38 -0.93 4.24 16 13 S 2.72 6.05 5.71 -56.49 -0.32 5.73 16 14 O -0.98 -6.91 17.64 -128.00 -2.26 -9.17 16 15 O -0.98 -8.55 16.89 -128.00 -2.16 -10.71 16 16 C -0.70 -0.60 5.72 21.22 0.12 -0.48 16 17 C -0.08 0.18 10.70 66.72 0.71 0.90 16 18 S 0.19 -0.58 20.58 -56.49 -1.16 -1.74 16 19 C -0.23 -0.05 5.72 24.59 0.14 0.09 16 20 C -0.04 0.00 2.96 71.24 0.21 0.22 16 21 O -0.55 -0.60 12.86 -148.98 -1.92 -2.51 16 22 Si 0.73 -1.54 30.97 68.60 2.12 0.58 16 23 C -0.06 -0.13 9.12 21.22 0.19 0.06 16 24 C -0.11 0.76 5.45 30.59 0.17 0.92 16 25 C -0.10 0.16 4.71 30.59 0.14 0.30 16 26 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.09 -0.49 8.07 -2.39 -0.02 -0.51 16 28 H 0.05 0.27 7.37 -2.39 -0.02 0.25 16 29 H 0.10 -1.14 4.95 -2.39 -0.01 -1.15 16 30 H 0.07 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.08 -0.75 8.14 -2.38 -0.02 -0.77 16 32 H 0.09 -0.45 7.53 -2.39 -0.02 -0.47 16 33 H 0.05 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.07 -0.04 7.64 -2.39 -0.02 -0.06 16 35 H 0.10 -0.85 8.14 -2.38 -0.02 -0.87 16 36 H 0.43 -4.12 8.84 -96.75 -0.86 -4.98 16 37 H 0.21 -1.39 8.00 -2.91 -0.02 -1.42 16 38 H 0.12 0.08 7.96 -2.39 -0.02 0.06 16 39 H 0.40 -2.73 8.70 -74.06 -0.64 -3.37 16 40 H -0.27 -1.18 7.11 99.48 0.71 -0.48 16 41 H -0.26 -0.33 7.11 99.48 0.71 0.38 16 42 H 0.15 0.49 7.96 -2.91 -0.02 0.47 16 43 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 44 H 0.10 -1.03 8.14 -2.38 -0.02 -1.05 16 45 H 0.05 0.18 7.88 -2.39 -0.02 0.16 16 46 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: 0.00 -28.76 393.83 -4.60 -33.37 By element: Atomic # 1 Polarization: -16.07 SS G_CDS: -0.44 Total: -16.51 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.36 Total: 8.10 kcal Atomic # 7 Polarization: 5.12 SS G_CDS: -3.78 Total: 1.34 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -6.38 Total: -30.86 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: 2.12 Total: 0.58 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -1.48 Total: 3.98 kcal Total: -28.76 -4.60 -33.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_15065232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.661 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds