Wall clock time and date at job start Mon Mar 8 2021 09:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33383 * 125.20280 * 2 1 4 4 C 1.50697 * 122.54128 * 359.97438 * 3 2 1 5 5 O 1.42907 * 109.47121 * 80.77554 * 4 3 2 6 6 Si 1.86308 * 109.47146 * 320.77936 * 4 3 2 7 7 C 1.38426 * 114.92511 * 179.97438 * 3 2 1 8 8 S 1.76199 * 122.54385 * 179.97438 * 7 3 2 9 9 O 1.42098 * 106.40145 * 157.55215 * 8 7 3 10 10 O 1.42102 * 106.39744 * 24.63669 * 8 7 3 11 11 N 1.65597 * 107.22202 * 271.09495 * 8 7 3 12 12 C 1.46505 * 119.99645 * 64.99699 * 11 8 7 13 13 H 1.09000 * 109.47192 * 335.00335 * 12 11 8 14 14 C 1.53003 * 109.46843 * 95.00221 * 12 11 8 15 15 C 1.53006 * 109.46821 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47520 * 300.00221 * 15 14 12 17 17 H 1.09001 * 109.46988 * 300.00310 * 16 15 14 18 18 C 1.50697 * 109.46945 * 179.97438 * 16 15 14 19 19 O 1.21279 * 119.99605 * 239.99547 * 18 16 15 20 20 N 1.34776 * 120.00195 * 60.00166 * 18 16 15 21 21 C 1.46494 * 120.00025 * 179.97438 * 20 18 16 22 22 C 1.46502 * 119.99687 * 359.97438 * 20 18 16 23 23 C 1.52998 * 109.46874 * 59.99720 * 16 15 14 24 24 C 1.52998 * 109.47524 * 299.99869 * 23 16 15 25 25 C 1.33388 * 114.91754 * 0.24447 * 7 3 2 26 26 C 1.50702 * 125.20483 * 179.75431 * 25 7 3 27 27 S 1.75884 * 125.20488 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.46682 * 89.09822 * 1 2 3 29 29 H 1.09003 * 109.47119 * 209.09137 * 1 2 3 30 30 H 1.08999 * 109.47183 * 329.09226 * 1 2 3 31 31 H 1.08994 * 109.47918 * 200.77793 * 4 3 2 32 32 H 0.96702 * 113.99862 * 300.00326 * 5 4 3 33 33 H 1.48497 * 109.99932 * 184.50558 * 6 4 3 34 34 H 1.48503 * 109.99634 * 305.82261 * 6 4 3 35 35 H 0.96994 * 120.00073 * 245.00259 * 11 8 7 36 36 H 1.08993 * 109.46983 * 299.99907 * 14 12 11 37 37 H 1.09000 * 109.47134 * 60.00078 * 14 12 11 38 38 H 1.08998 * 109.46929 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.46724 * 60.00413 * 15 14 12 40 40 H 1.09002 * 109.47343 * 269.99687 * 21 20 18 41 41 H 1.09003 * 109.47145 * 30.00043 * 21 20 18 42 42 H 1.08998 * 109.47220 * 149.99723 * 21 20 18 43 43 H 1.08997 * 109.46793 * 269.99596 * 22 20 18 44 44 H 1.09001 * 109.47474 * 30.00037 * 22 20 18 45 45 H 1.08999 * 109.46770 * 150.00321 * 22 20 18 46 46 H 1.09003 * 109.47298 * 60.00716 * 23 16 15 47 47 H 1.08999 * 109.46990 * 179.97438 * 23 16 15 48 48 H 1.08998 * 109.47178 * 180.02562 * 24 23 16 49 49 H 1.08990 * 109.47121 * 300.00266 * 24 23 16 50 50 H 1.08991 * 109.46856 * 84.17143 * 26 25 7 51 51 H 1.09004 * 109.47089 * 204.17223 * 26 25 7 52 52 H 1.08997 * 109.46733 * 324.16777 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 1.3244 2.8440 1.3291 6 14 0.2109 2.5437 -1.1118 7 6 3.6380 0.8429 0.0006 8 16 4.8356 2.1353 0.0000 9 8 6.0323 1.5736 0.5212 10 8 4.1993 3.2722 0.5673 11 7 5.1472 2.5143 -1.5816 12 6 4.0913 3.0897 -2.4186 13 1 3.1171 2.7984 -2.0259 14 6 4.2089 4.6152 -2.4108 15 6 3.1066 5.2161 -3.2854 16 6 3.2544 4.7005 -4.7183 17 1 4.2288 4.9918 -5.1105 18 6 2.1683 5.2919 -5.5794 19 8 1.3785 4.5648 -6.1438 20 7 2.0746 6.6287 -5.7225 21 6 1.0191 7.2036 -6.5601 22 6 3.0284 7.5070 -5.0404 23 6 3.1369 3.1750 -4.7259 24 6 4.2392 2.5741 -3.8515 25 6 3.9751 -0.4477 -0.0041 26 6 5.3861 -0.9770 -0.0099 27 16 2.5210 -1.4371 0.0006 28 1 -0.3632 0.0162 -1.0275 29 1 -0.3633 -0.8980 0.4997 30 1 -0.3633 0.8817 0.5279 31 1 2.4568 3.1848 -0.3650 32 1 0.6566 2.2625 1.7177 33 1 -0.2966 3.9360 -1.2068 34 1 0.5626 2.0379 -2.4630 35 1 6.0286 2.3554 -1.9539 36 1 4.1040 4.9825 -1.3900 37 1 5.1831 4.9066 -2.8034 38 1 3.1906 6.3028 -3.2802 39 1 2.1323 4.9248 -2.8931 40 1 1.3809 7.3026 -7.5836 41 1 0.1468 6.5502 -6.5447 42 1 0.7443 8.1856 -6.1753 43 1 2.6413 7.7684 -4.0556 44 1 3.9826 6.9917 -4.9307 45 1 3.1707 8.4143 -5.6274 46 1 2.1625 2.8837 -4.3337 47 1 3.2417 2.8077 -5.7468 48 1 4.1557 1.4873 -3.8574 49 1 5.2134 2.8654 -4.2438 50 1 5.7659 -1.0098 1.0111 51 1 5.3957 -1.9813 -0.4336 52 1 6.0170 -0.3228 -0.6116 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17310140_15065288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:36:56 Heat of formation + Delta-G solvation = -102.784320 kcal Electronic energy + Delta-G solvation = -37308.077068 eV Core-core repulsion = 32721.027537 eV Total energy + Delta-G solvation = -4587.049531 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.137 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.60644 -40.41883 -39.40417 -38.56123 -37.17014 -37.06943 -36.76569 -35.43419 -34.33511 -31.98379 -30.95276 -30.76614 -28.72916 -28.13834 -27.17501 -25.96633 -23.94675 -23.80283 -23.25943 -21.60488 -20.82907 -20.32546 -20.08071 -19.04244 -18.62842 -18.08184 -17.97442 -17.70194 -17.23166 -16.89154 -16.81923 -16.17329 -16.10940 -15.87204 -15.47887 -15.40996 -15.12652 -14.98587 -14.65059 -14.57584 -14.47484 -14.24586 -14.09176 -14.05217 -13.87941 -13.71713 -13.69180 -13.57106 -13.46260 -13.43614 -13.32184 -13.18498 -13.06634 -12.78769 -12.76579 -12.67571 -12.51116 -12.34311 -12.33477 -12.15280 -11.86332 -11.74896 -11.60933 -11.43980 -10.85532 -10.56936 -10.50767 -9.99850 -9.77608 -9.53851 -5.09182 -0.84265 -0.47488 0.37033 0.64576 0.78396 1.16698 1.46352 1.48572 1.82721 1.91350 1.99036 2.57407 3.14798 3.32386 3.39085 3.45187 3.49621 3.55759 3.70908 3.81723 3.94956 3.97095 3.98062 4.02185 4.11058 4.16039 4.21175 4.25094 4.34921 4.35496 4.38018 4.41175 4.49267 4.50893 4.59932 4.62360 4.66190 4.67862 4.73488 4.81627 4.82708 4.85930 4.91223 4.93045 5.00777 5.03798 5.04901 5.07616 5.20231 5.22341 5.29898 5.40213 5.96562 6.23604 6.73361 7.02493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.186 4.186 3 C -0.094 4.094 4 C -0.077 4.077 5 O -0.537 6.537 6 Si 0.720 3.280 7 C -0.695 4.695 8 S 2.705 3.295 9 O -0.976 6.976 10 O -0.967 6.967 11 N -1.098 6.098 12 C 0.143 3.857 13 H 0.064 0.936 14 C -0.139 4.139 15 C -0.121 4.121 16 C -0.102 4.102 17 H 0.134 0.866 18 C 0.505 3.495 19 O -0.588 6.588 20 N -0.622 5.622 21 C 0.079 3.921 22 C 0.063 3.937 23 C -0.099 4.099 24 C -0.116 4.116 25 C -0.061 4.061 26 C -0.115 4.115 27 S 0.197 5.803 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.386 0.614 33 H -0.284 1.284 34 H -0.271 1.271 35 H 0.432 0.568 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.097 0.903 51 H 0.103 0.897 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -1.375 -2.077 2.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.304 4.304 3 C -0.104 4.104 4 C -0.189 4.189 5 O -0.344 6.344 6 Si 0.623 3.377 7 C -0.796 4.796 8 S 2.795 3.205 9 O -0.966 6.966 10 O -0.957 6.957 11 N -0.861 5.861 12 C 0.036 3.964 13 H 0.082 0.918 14 C -0.178 4.178 15 C -0.159 4.159 16 C -0.122 4.122 17 H 0.152 0.848 18 C 0.294 3.706 19 O -0.468 6.468 20 N -0.355 5.355 21 C -0.064 4.064 22 C -0.079 4.079 23 C -0.138 4.138 24 C -0.155 4.155 25 C -0.183 4.183 26 C -0.174 4.174 27 S 0.464 5.536 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.235 0.765 33 H -0.211 1.211 34 H -0.197 1.197 35 H 0.270 0.730 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.109 0.891 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.122 0.878 50 H 0.116 0.884 51 H 0.122 0.878 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.204 -2.113 -2.372 3.183 hybrid contribution 0.599 1.056 -0.334 1.260 sum 0.396 -1.057 -2.706 2.932 Atomic orbital electron populations 1.20614 0.85105 1.05325 1.05361 1.24774 1.01836 0.94992 1.08804 1.18629 0.90884 0.97036 1.03854 1.25448 1.07942 0.92738 0.92809 1.86632 1.63288 1.56669 1.27834 0.94297 0.83516 0.81850 0.77998 1.29423 1.12036 1.13605 1.24537 1.01388 0.72737 0.73524 0.72894 1.93569 1.45650 1.79714 1.77631 1.93597 1.76931 1.49122 1.76036 1.55373 1.21782 1.78378 1.30523 1.21037 0.88872 0.94150 0.92367 0.91769 1.22138 1.00910 0.93640 1.01087 1.21829 0.98665 1.03220 0.92188 1.21423 0.98902 0.96533 0.95387 0.84842 1.21280 0.85921 0.82249 0.81135 1.90681 1.44981 1.60747 1.50410 1.47952 1.32408 1.06059 1.49073 1.21737 0.90333 0.99468 0.94837 1.22319 0.92685 0.95070 0.97788 1.21311 0.98556 0.93080 1.00843 1.21833 1.00548 1.01321 0.91799 1.24836 1.02029 0.95057 0.96341 1.20989 0.87456 1.03391 1.05540 1.84220 0.93814 1.07146 1.68436 0.87873 0.86464 0.87423 0.86958 0.76475 1.21073 1.19662 0.72960 0.90903 0.87570 0.87432 0.93888 0.92128 0.92843 0.88643 0.91063 0.88739 0.89061 0.93802 0.90715 0.90173 0.87802 0.88418 0.87823 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.87 8.15 71.24 0.58 1.45 16 2 C -0.19 0.13 6.13 24.59 0.15 0.28 16 3 C -0.09 -0.39 4.53 -20.92 -0.09 -0.49 16 4 C -0.08 -0.47 1.37 71.23 0.10 -0.38 16 5 O -0.54 -3.67 12.87 -148.98 -1.92 -5.59 16 6 Si 0.72 2.12 26.09 68.60 1.79 3.91 16 7 C -0.70 -3.63 5.72 21.22 0.12 -3.50 16 8 S 2.71 17.87 5.20 -56.49 -0.29 17.57 16 9 O -0.98 -9.47 15.16 -128.00 -1.94 -11.41 16 10 O -0.97 -12.43 14.09 -127.97 -1.80 -14.23 16 11 N -1.10 1.04 5.47 -169.37 -0.93 0.11 16 12 C 0.14 -0.04 2.41 44.99 0.11 0.07 16 13 H 0.06 0.20 4.41 -2.39 -0.01 0.19 16 14 C -0.14 0.25 5.53 30.60 0.17 0.42 16 15 C -0.12 0.15 4.84 30.60 0.15 0.30 16 16 C -0.10 0.06 1.72 -11.54 -0.02 0.04 16 17 H 0.13 -0.90 7.40 -2.39 -0.02 -0.92 16 18 C 0.50 3.12 7.08 87.66 0.62 3.74 16 19 O -0.59 -9.12 15.56 -3.03 -0.05 -9.16 16 20 N -0.62 -0.62 3.27 -871.91 -2.85 -3.48 16 21 C 0.08 0.04 10.44 127.77 1.33 1.37 16 22 C 0.06 -0.46 8.80 127.77 1.12 0.67 16 23 C -0.10 -0.17 4.49 30.59 0.14 -0.03 16 24 C -0.12 0.38 5.45 30.59 0.17 0.55 16 25 C -0.06 -0.13 6.49 24.59 0.16 0.03 16 26 C -0.12 0.11 8.86 71.24 0.63 0.74 16 27 S 0.20 -0.31 23.31 -56.49 -1.32 -1.62 16 28 H 0.10 -0.99 6.68 -2.39 -0.02 -1.00 16 29 H 0.12 -1.41 8.14 -2.39 -0.02 -1.43 16 30 H 0.11 -1.23 4.68 -2.39 -0.01 -1.24 16 31 H 0.11 1.03 3.49 -2.39 -0.01 1.02 16 32 H 0.39 -1.23 7.72 -74.06 -0.57 -1.80 16 33 H -0.28 -2.76 7.11 99.48 0.71 -2.05 16 34 H -0.27 -1.90 7.11 99.48 0.71 -1.20 16 35 H 0.43 -2.83 8.84 -96.75 -0.85 -3.69 16 36 H 0.07 0.14 7.64 -2.39 -0.02 0.12 16 37 H 0.11 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H 0.11 -0.59 4.53 -2.39 -0.01 -0.60 16 39 H 0.04 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.06 -0.03 8.14 -2.39 -0.02 -0.04 16 41 H 0.05 0.29 7.42 -2.39 -0.02 0.27 16 42 H 0.09 -0.45 8.07 -2.39 -0.02 -0.47 16 43 H 0.07 -0.59 6.95 -2.39 -0.02 -0.61 16 44 H 0.09 -0.99 6.01 -2.39 -0.01 -1.01 16 45 H 0.09 -0.92 8.07 -2.39 -0.02 -0.93 16 46 H 0.04 0.32 8.10 -2.39 -0.02 0.30 16 47 H 0.07 0.21 8.10 -2.39 -0.02 0.19 16 48 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.10 -0.86 8.14 -2.39 -0.02 -0.88 16 50 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 51 H 0.10 -0.60 8.14 -2.38 -0.02 -0.62 16 52 H 0.09 -0.13 6.66 -2.39 -0.02 -0.14 16 Total: 0.00 -31.87 407.16 -4.28 -36.15 By element: Atomic # 1 Polarization: -17.10 SS G_CDS: -0.40 Total: -17.50 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.44 Total: 5.25 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -3.78 Total: -3.36 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -5.71 Total: -40.39 kcal Atomic # 14 Polarization: 2.12 SS G_CDS: 1.79 Total: 3.91 kcal Atomic # 16 Polarization: 17.56 SS G_CDS: -1.61 Total: 15.95 kcal Total: -31.87 -4.28 -36.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_15065288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.636 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds