Wall clock time and date at job start Mon Mar 8 2021 09:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00331 * 2 1 4 4 C 1.34781 * 119.99824 * 179.97438 * 2 1 3 5 5 O 1.21280 * 119.99934 * 1.68559 * 4 2 1 6 6 C 1.50705 * 119.99819 * 181.67708 * 4 2 1 7 7 H 1.09005 * 109.46875 * 44.44892 * 6 4 2 8 8 C 1.53005 * 109.46608 * 164.44762 * 6 4 2 9 9 C 1.53001 * 109.46660 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.47107 * 300.00102 * 9 8 6 11 11 H 1.09005 * 109.47093 * 299.99862 * 10 9 8 12 12 N 1.46503 * 109.46857 * 180.02562 * 10 9 8 13 13 S 1.65599 * 120.00241 * 95.20071 * 12 10 9 14 14 O 1.42094 * 106.40449 * 178.60241 * 13 12 10 15 15 O 1.42102 * 106.40046 * 311.52357 * 13 12 10 16 16 C 1.76199 * 107.21706 * 65.05992 * 13 12 10 17 17 C 1.38215 * 120.00005 * 63.22232 * 16 13 12 18 18 C 1.50697 * 119.99810 * 359.97438 * 17 16 13 19 19 O 1.42901 * 109.47097 * 75.66717 * 18 17 16 20 20 Si 1.86303 * 109.46771 * 195.65952 * 18 17 16 21 21 C 1.38265 * 119.99758 * 179.78303 * 17 16 13 22 22 C 1.38206 * 119.99803 * 0.46892 * 21 17 16 23 23 C 1.38252 * 120.00592 * 359.76152 * 22 21 17 24 24 C 1.38214 * 119.99772 * 0.02562 * 23 22 21 25 25 C 1.52999 * 109.47489 * 59.99882 * 10 9 8 26 26 C 1.52988 * 109.47271 * 284.44682 * 6 4 2 27 27 H 1.08997 * 109.47168 * 270.00394 * 1 2 3 28 28 H 1.09007 * 109.46695 * 30.00271 * 1 2 3 29 29 H 1.08999 * 109.46972 * 150.00126 * 1 2 3 30 30 H 1.08999 * 109.47514 * 241.48797 * 3 2 1 31 31 H 1.08999 * 109.47072 * 1.48414 * 3 2 1 32 32 H 1.09002 * 109.47630 * 121.48233 * 3 2 1 33 33 H 1.08994 * 109.47286 * 59.99959 * 8 6 4 34 34 H 1.09004 * 109.46568 * 299.99852 * 8 6 4 35 35 H 1.09000 * 109.46729 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.47032 * 60.00002 * 9 8 6 37 37 H 0.96995 * 119.99821 * 275.19507 * 12 10 9 38 38 H 1.08993 * 109.47338 * 315.65996 * 18 17 16 39 39 H 0.96702 * 113.99807 * 184.97051 * 19 18 17 40 40 H 1.48500 * 109.99875 * 178.67914 * 20 18 17 41 41 H 1.48490 * 110.00493 * 299.99921 * 20 18 17 42 42 H 1.08003 * 119.99733 * 180.25059 * 21 17 16 43 43 H 1.08009 * 119.99896 * 179.79144 * 22 21 17 44 44 H 1.08004 * 120.00523 * 180.02562 * 23 22 21 45 45 H 1.08004 * 119.99988 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.46638 * 60.00325 * 25 10 9 47 47 H 1.08997 * 109.46672 * 179.97438 * 25 10 9 48 48 H 1.09000 * 109.47691 * 60.00106 * 26 6 4 49 49 H 1.09005 * 109.47343 * 299.99924 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5328 -2.2173 -0.0299 6 6 3.6454 -1.1675 0.0387 7 1 3.9902 -0.4442 0.7777 8 6 4.1456 -2.5627 0.4186 9 6 5.6751 -2.5628 0.4580 10 6 6.2208 -2.1830 -0.9200 11 1 5.8763 -2.9062 -1.6592 12 7 7.6853 -2.1837 -0.8823 13 16 8.5254 -3.5276 -1.3627 14 8 9.9036 -3.2039 -1.2416 15 8 7.9256 -4.6332 -0.7014 16 6 8.2155 -3.7490 -3.0830 17 6 8.6239 -2.7876 -3.9881 18 6 9.3336 -1.5497 -3.5035 19 8 10.6828 -1.8762 -3.1642 20 14 9.3262 -0.2624 -4.8502 21 6 8.3847 -2.9635 -5.3385 22 6 7.7287 -4.0961 -5.7823 23 6 7.3160 -5.0556 -4.8765 24 6 7.5590 -4.8819 -3.5270 25 6 5.7205 -0.7879 -1.2998 26 6 4.1906 -0.7880 -1.3394 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.8041 1.3381 -0.9030 31 1 1.4896 2.0970 0.0266 32 1 2.8441 1.3150 0.8764 33 1 3.8008 -3.2860 -0.3203 34 1 3.7571 -2.8330 1.4005 35 1 6.0314 -3.5567 0.7290 36 1 6.0196 -1.8396 1.1972 37 1 8.1630 -1.3970 -0.5761 38 1 8.8222 -1.1584 -2.6241 39 1 11.1782 -1.1437 -2.7728 40 1 9.9952 0.9749 -4.3738 41 1 10.0206 -0.7835 -6.0549 42 1 8.7074 -2.2141 -6.0462 43 1 7.5389 -4.2320 -6.8368 44 1 6.8038 -5.9409 -5.2233 45 1 7.2362 -5.6312 -2.8193 46 1 6.0651 -0.0647 -0.5606 47 1 6.1097 -0.5172 -2.2813 48 1 3.8343 0.2059 -1.6101 49 1 3.8458 -1.5113 -2.0784 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17310140_2726874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:37:02 Heat of formation + Delta-G solvation = -99.221011 kcal Electronic energy + Delta-G solvation = -33515.851542 eV Core-core repulsion = 29150.879520 eV Total energy + Delta-G solvation = -4364.972023 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.149 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.41718 -40.65739 -39.31459 -38.30684 -37.44858 -36.69326 -36.57743 -35.36561 -32.99118 -32.41789 -31.92004 -30.74086 -28.83104 -27.15437 -26.95642 -24.43021 -23.95328 -23.74642 -22.70173 -21.48751 -20.51882 -20.10611 -19.02082 -18.63908 -18.31450 -17.98185 -17.73755 -17.19091 -17.02719 -16.72788 -16.69359 -15.94137 -15.77247 -15.38806 -15.25097 -15.11235 -15.04650 -14.95372 -14.53283 -14.26195 -14.06234 -13.86786 -13.79054 -13.75638 -13.54613 -13.45379 -13.31763 -13.24016 -13.17559 -12.95492 -12.86623 -12.79805 -12.45843 -12.34575 -12.22822 -12.10516 -12.03892 -11.80776 -11.57144 -11.38344 -10.69275 -10.63300 -10.47010 -10.36816 -10.08209 -9.70968 -5.11729 -0.60328 -0.25298 0.10510 1.06830 1.44936 1.64349 1.81609 1.92240 1.99737 2.35709 2.77932 3.14881 3.34778 3.40060 3.47342 3.56648 3.64116 3.76882 3.81493 3.85369 3.93698 3.95351 4.02742 4.05376 4.06954 4.15853 4.21285 4.27543 4.30066 4.37933 4.39166 4.40770 4.47998 4.54634 4.60124 4.70663 4.72975 4.74506 4.85879 4.90441 4.94798 4.98036 5.06974 5.10792 5.18445 5.24405 5.25471 5.36286 5.44147 5.69100 5.85686 6.29740 6.45741 7.18593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.624 5.624 3 C 0.074 3.926 4 C 0.516 3.484 5 O -0.535 6.535 6 C -0.108 4.108 7 H 0.097 0.903 8 C -0.100 4.100 9 C -0.138 4.138 10 C 0.152 3.848 11 H 0.087 0.913 12 N -1.115 6.115 13 S 2.686 3.314 14 O -0.932 6.932 15 O -0.956 6.956 16 C -0.657 4.657 17 C 0.030 3.970 18 C -0.110 4.110 19 O -0.503 6.503 20 Si 0.690 3.310 21 C -0.138 4.138 22 C -0.058 4.058 23 C -0.133 4.133 24 C -0.023 4.023 25 C -0.124 4.124 26 C -0.111 4.111 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.417 0.583 38 H 0.075 0.925 39 H 0.383 0.617 40 H -0.255 1.255 41 H -0.251 1.251 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.146 0.854 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 8.184 -2.659 9.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.359 5.359 3 C -0.069 4.069 4 C 0.304 3.696 5 O -0.410 6.410 6 C -0.129 4.129 7 H 0.115 0.885 8 C -0.138 4.138 9 C -0.177 4.177 10 C 0.045 3.955 11 H 0.105 0.895 12 N -0.874 5.874 13 S 2.775 3.225 14 O -0.922 6.922 15 O -0.946 6.946 16 C -0.743 4.743 17 C 0.029 3.971 18 C -0.219 4.219 19 O -0.310 6.310 20 Si 0.590 3.410 21 C -0.157 4.157 22 C -0.076 4.076 23 C -0.152 4.152 24 C -0.042 4.042 25 C -0.163 4.163 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.093 0.907 39 H 0.231 0.769 40 H -0.180 1.180 41 H -0.176 1.176 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.155 0.845 45 H 0.164 0.836 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.316 6.858 -2.982 8.181 hybrid contribution 0.837 0.632 0.200 1.068 sum -2.479 7.490 -2.782 8.366 Atomic orbital electron populations 1.21704 0.79033 1.03302 1.02013 1.47799 1.07224 1.06516 1.74316 1.21955 0.97553 0.85247 1.02111 1.20737 0.90183 0.83083 0.75588 1.90720 1.70368 1.31014 1.48948 1.21417 0.91093 1.00636 0.99748 0.88538 1.21357 0.94271 0.94889 1.03301 1.22109 0.95243 1.03698 0.96694 1.20869 0.77749 0.98631 0.98203 0.89463 1.55795 1.15660 1.34234 1.81752 1.02290 0.73443 0.73092 0.73702 1.93686 1.29614 1.83153 1.85713 1.93597 1.78256 1.50870 1.71840 1.30803 1.14261 1.03297 1.25948 1.18808 0.92487 0.92552 0.93291 1.25191 0.86600 1.01894 1.08238 1.86767 1.21027 1.40275 1.82893 0.95270 0.91588 0.76270 0.77901 1.21255 1.00552 0.99094 0.94761 1.21476 0.93238 0.92458 1.00416 1.21408 1.00751 0.99918 0.93100 1.21084 0.91635 0.94449 0.97031 1.21867 0.95192 0.96200 1.03023 1.21572 0.95042 1.02846 0.95494 0.92668 0.91120 0.90412 0.91491 0.90283 0.91793 0.90391 0.90836 0.89704 0.90993 0.74766 0.90678 0.76904 1.17976 1.17613 0.84610 0.84592 0.84520 0.83585 0.90541 0.90207 0.90360 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.08 10.41 59.85 0.62 0.54 16 2 N -0.62 0.48 3.27 -189.51 -0.62 -0.14 16 3 C 0.07 -0.32 9.61 59.85 0.58 0.26 16 4 C 0.52 0.67 6.90 -10.98 -0.08 0.59 16 5 O -0.53 -2.98 15.57 5.56 0.09 -2.89 16 6 C -0.11 0.19 1.81 -91.77 -0.17 0.03 16 7 H 0.10 -0.33 7.12 -51.93 -0.37 -0.70 16 8 C -0.10 0.03 4.62 -26.73 -0.12 -0.09 16 9 C -0.14 0.16 5.53 -26.73 -0.15 0.02 16 10 C 0.15 -0.36 2.65 -67.93 -0.18 -0.54 16 11 H 0.09 -0.19 7.85 -51.93 -0.41 -0.59 16 12 N -1.12 2.12 4.17 -4.89 -0.02 2.10 16 13 S 2.69 5.78 4.90 -107.50 -0.53 5.25 16 14 O -0.93 -4.54 15.06 -66.39 -1.00 -5.54 16 15 O -0.96 -4.55 16.26 -57.17 -0.93 -5.48 16 16 C -0.66 -1.12 5.74 -39.58 -0.23 -1.35 16 17 C 0.03 0.03 5.28 -104.62 -0.55 -0.52 16 18 C -0.11 0.04 1.85 36.00 0.07 0.10 16 19 O -0.50 -1.03 10.46 -57.68 -0.60 -1.63 16 20 Si 0.69 -1.28 30.31 -169.99 -5.15 -6.43 16 21 C -0.14 0.00 8.66 -39.58 -0.34 -0.34 16 22 C -0.06 0.05 10.05 -39.59 -0.40 -0.35 16 23 C -0.13 0.05 10.05 -39.58 -0.40 -0.35 16 24 C -0.02 -0.03 9.55 -39.58 -0.38 -0.40 16 25 C -0.12 0.57 5.46 -26.71 -0.15 0.43 16 26 C -0.11 0.40 5.08 -26.71 -0.14 0.27 16 27 H 0.05 -0.06 8.14 -51.93 -0.42 -0.48 16 28 H 0.07 -0.22 7.93 -51.92 -0.41 -0.64 16 29 H 0.08 0.06 7.40 -51.93 -0.38 -0.33 16 30 H 0.07 -0.37 5.67 -51.93 -0.29 -0.66 16 31 H 0.08 -0.41 7.81 -51.93 -0.41 -0.82 16 32 H 0.06 -0.32 7.38 -51.93 -0.38 -0.70 16 33 H 0.08 0.08 7.93 -51.93 -0.41 -0.33 16 34 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 35 H 0.08 0.06 7.66 -51.93 -0.40 -0.34 16 36 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 37 H 0.42 -1.75 8.48 -34.47 -0.29 -2.05 16 38 H 0.08 -0.22 5.75 -51.93 -0.30 -0.52 16 39 H 0.38 -0.67 8.86 45.56 0.40 -0.27 16 40 H -0.25 0.03 7.11 56.52 0.40 0.44 16 41 H -0.25 -0.27 6.72 56.52 0.38 0.11 16 42 H 0.14 -0.20 4.91 -52.48 -0.26 -0.46 16 43 H 0.14 -0.46 8.06 -52.48 -0.42 -0.88 16 44 H 0.14 -0.35 8.06 -52.48 -0.42 -0.77 16 45 H 0.15 0.06 7.34 -52.48 -0.39 -0.33 16 46 H 0.08 -0.44 8.14 -51.93 -0.42 -0.86 16 47 H 0.08 -0.46 8.14 -51.93 -0.42 -0.89 16 48 H 0.08 -0.38 5.53 -51.93 -0.29 -0.67 16 49 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 LS Contribution 389.62 15.07 5.87 5.87 Total: 0.00 -12.84 389.62 -12.08 -24.93 By element: Atomic # 1 Polarization: -7.13 SS G_CDS: -7.18 Total: -14.32 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.00 Total: -1.72 kcal Atomic # 7 Polarization: 2.60 SS G_CDS: -0.64 Total: 1.96 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -2.45 Total: -15.54 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.15 Total: -6.43 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -0.53 Total: 5.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -12.84 -12.08 -24.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_2726874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.296 kcal (2) G-P(sol) polarization free energy of solvation -12.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds