Wall clock time and date at job start Mon Mar 8 2021 09:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00331 * 2 1 4 4 C 1.34781 * 119.99824 * 179.97438 * 2 1 3 5 5 O 1.21280 * 119.99934 * 1.68559 * 4 2 1 6 6 C 1.50705 * 119.99819 * 181.67708 * 4 2 1 7 7 H 1.09005 * 109.46875 * 44.44892 * 6 4 2 8 8 C 1.53005 * 109.46608 * 164.44762 * 6 4 2 9 9 C 1.53001 * 109.46660 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.47107 * 300.00102 * 9 8 6 11 11 H 1.09005 * 109.47093 * 299.99862 * 10 9 8 12 12 N 1.46503 * 109.46857 * 180.02562 * 10 9 8 13 13 S 1.65599 * 120.00241 * 95.20071 * 12 10 9 14 14 O 1.42094 * 106.40449 * 178.60241 * 13 12 10 15 15 O 1.42102 * 106.40046 * 311.52357 * 13 12 10 16 16 C 1.76199 * 107.21706 * 65.05992 * 13 12 10 17 17 C 1.38215 * 120.00005 * 63.22232 * 16 13 12 18 18 C 1.50697 * 119.99810 * 359.97438 * 17 16 13 19 19 O 1.42901 * 109.47097 * 75.66717 * 18 17 16 20 20 Si 1.86303 * 109.46771 * 195.65952 * 18 17 16 21 21 C 1.38265 * 119.99758 * 179.78303 * 17 16 13 22 22 C 1.38206 * 119.99803 * 0.46892 * 21 17 16 23 23 C 1.38252 * 120.00592 * 359.76152 * 22 21 17 24 24 C 1.38214 * 119.99772 * 0.02562 * 23 22 21 25 25 C 1.52999 * 109.47489 * 59.99882 * 10 9 8 26 26 C 1.52988 * 109.47271 * 284.44682 * 6 4 2 27 27 H 1.08997 * 109.47168 * 270.00394 * 1 2 3 28 28 H 1.09007 * 109.46695 * 30.00271 * 1 2 3 29 29 H 1.08999 * 109.46972 * 150.00126 * 1 2 3 30 30 H 1.08999 * 109.47514 * 241.48797 * 3 2 1 31 31 H 1.08999 * 109.47072 * 1.48414 * 3 2 1 32 32 H 1.09002 * 109.47630 * 121.48233 * 3 2 1 33 33 H 1.08994 * 109.47286 * 59.99959 * 8 6 4 34 34 H 1.09004 * 109.46568 * 299.99852 * 8 6 4 35 35 H 1.09000 * 109.46729 * 179.97438 * 9 8 6 36 36 H 1.09005 * 109.47032 * 60.00002 * 9 8 6 37 37 H 0.96995 * 119.99821 * 275.19507 * 12 10 9 38 38 H 1.08993 * 109.47338 * 315.65996 * 18 17 16 39 39 H 0.96702 * 113.99807 * 184.97051 * 19 18 17 40 40 H 1.48500 * 109.99875 * 178.67914 * 20 18 17 41 41 H 1.48490 * 110.00493 * 299.99921 * 20 18 17 42 42 H 1.08003 * 119.99733 * 180.25059 * 21 17 16 43 43 H 1.08009 * 119.99896 * 179.79144 * 22 21 17 44 44 H 1.08004 * 120.00523 * 180.02562 * 23 22 21 45 45 H 1.08004 * 119.99988 * 179.97438 * 24 23 22 46 46 H 1.09003 * 109.46638 * 60.00325 * 25 10 9 47 47 H 1.08997 * 109.46672 * 179.97438 * 25 10 9 48 48 H 1.09000 * 109.47691 * 60.00106 * 26 6 4 49 49 H 1.09005 * 109.47343 * 299.99924 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5328 -2.2173 -0.0299 6 6 3.6454 -1.1675 0.0387 7 1 3.9902 -0.4442 0.7777 8 6 4.1456 -2.5627 0.4186 9 6 5.6751 -2.5628 0.4580 10 6 6.2208 -2.1830 -0.9200 11 1 5.8763 -2.9062 -1.6592 12 7 7.6853 -2.1837 -0.8823 13 16 8.5254 -3.5276 -1.3627 14 8 9.9036 -3.2039 -1.2416 15 8 7.9256 -4.6332 -0.7014 16 6 8.2155 -3.7490 -3.0830 17 6 8.6239 -2.7876 -3.9881 18 6 9.3336 -1.5497 -3.5035 19 8 10.6828 -1.8762 -3.1642 20 14 9.3262 -0.2624 -4.8502 21 6 8.3847 -2.9635 -5.3385 22 6 7.7287 -4.0961 -5.7823 23 6 7.3160 -5.0556 -4.8765 24 6 7.5590 -4.8819 -3.5270 25 6 5.7205 -0.7879 -1.2998 26 6 4.1906 -0.7880 -1.3394 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 2.8041 1.3381 -0.9030 31 1 1.4896 2.0970 0.0266 32 1 2.8441 1.3150 0.8764 33 1 3.8008 -3.2860 -0.3203 34 1 3.7571 -2.8330 1.4005 35 1 6.0314 -3.5567 0.7290 36 1 6.0196 -1.8396 1.1972 37 1 8.1630 -1.3970 -0.5761 38 1 8.8222 -1.1584 -2.6241 39 1 11.1782 -1.1437 -2.7728 40 1 9.9952 0.9749 -4.3738 41 1 10.0206 -0.7835 -6.0549 42 1 8.7074 -2.2141 -6.0462 43 1 7.5389 -4.2320 -6.8368 44 1 6.8038 -5.9409 -5.2233 45 1 7.2362 -5.6312 -2.8193 46 1 6.0651 -0.0647 -0.5606 47 1 6.1097 -0.5172 -2.2813 48 1 3.8343 0.2059 -1.6101 49 1 3.8458 -1.5113 -2.0784 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17310140_2726874.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:37:01 Heat of formation + Delta-G solvation = -103.845790 kcal Electronic energy + Delta-G solvation = -33516.052088 eV Core-core repulsion = 29150.879520 eV Total energy + Delta-G solvation = -4365.172568 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.149 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.38295 -40.62494 -39.23787 -38.47488 -37.51917 -36.95142 -36.57725 -35.29595 -32.96819 -32.40065 -31.75499 -30.62668 -28.62304 -27.04986 -26.89245 -24.42335 -23.79473 -23.59671 -22.67698 -21.35468 -20.56933 -20.05468 -19.03966 -18.65748 -18.37667 -17.93550 -17.71219 -17.16435 -16.99523 -16.70017 -16.60285 -15.96063 -15.82587 -15.26054 -15.12811 -15.08068 -15.01054 -14.80450 -14.48005 -14.19923 -14.02739 -13.84453 -13.61582 -13.57253 -13.53365 -13.42470 -13.31195 -13.22753 -13.15258 -13.07726 -13.00767 -12.71319 -12.30417 -12.23418 -12.19952 -12.05172 -11.98345 -11.74982 -11.47867 -11.25488 -10.68156 -10.61512 -10.45361 -10.28617 -10.07038 -9.63832 -4.95383 -0.69767 -0.28198 0.11732 1.19817 1.59494 1.61276 1.89641 1.95713 2.10523 2.36999 2.67112 3.23585 3.34880 3.48320 3.66504 3.70147 3.75004 3.84053 3.89220 3.99336 4.08193 4.11873 4.22728 4.24806 4.30221 4.35225 4.39246 4.42932 4.44111 4.50700 4.54074 4.57161 4.58282 4.71735 4.78272 4.89107 4.91212 4.93914 4.98780 4.99088 5.14070 5.17114 5.21775 5.26027 5.28514 5.30231 5.39856 5.50700 5.55765 5.74534 6.09392 6.37796 6.62557 7.17908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.623 5.623 3 C 0.065 3.935 4 C 0.506 3.494 5 O -0.592 6.592 6 C -0.100 4.100 7 H 0.123 0.877 8 C -0.097 4.097 9 C -0.136 4.136 10 C 0.148 3.852 11 H 0.080 0.920 12 N -1.098 6.098 13 S 2.694 3.306 14 O -0.964 6.964 15 O -0.992 6.992 16 C -0.668 4.668 17 C 0.018 3.982 18 C -0.132 4.132 19 O -0.533 6.533 20 Si 0.784 3.216 21 C -0.147 4.147 22 C -0.056 4.056 23 C -0.137 4.137 24 C -0.042 4.042 25 C -0.118 4.118 26 C -0.107 4.107 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.431 0.569 38 H 0.099 0.901 39 H 0.395 0.605 40 H -0.275 1.275 41 H -0.293 1.293 42 H 0.150 0.850 43 H 0.165 0.835 44 H 0.157 0.843 45 H 0.142 0.858 46 H 0.101 0.899 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 11.187 -3.799 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.356 5.356 3 C -0.076 4.076 4 C 0.295 3.705 5 O -0.473 6.473 6 C -0.121 4.121 7 H 0.141 0.859 8 C -0.136 4.136 9 C -0.175 4.175 10 C 0.042 3.958 11 H 0.098 0.902 12 N -0.861 5.861 13 S 2.785 3.215 14 O -0.954 6.954 15 O -0.982 6.982 16 C -0.756 4.756 17 C 0.016 3.984 18 C -0.240 4.240 19 O -0.343 6.343 20 Si 0.687 3.313 21 C -0.165 4.165 22 C -0.074 4.074 23 C -0.156 4.156 24 C -0.062 4.062 25 C -0.157 4.157 26 C -0.145 4.145 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.269 0.731 38 H 0.117 0.883 39 H 0.245 0.755 40 H -0.201 1.201 41 H -0.221 1.221 42 H 0.168 0.832 43 H 0.182 0.818 44 H 0.175 0.825 45 H 0.159 0.841 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.235 9.910 -4.070 11.191 hybrid contribution 0.772 -0.317 0.543 0.995 sum -2.464 9.593 -3.528 10.514 Atomic orbital electron populations 1.21747 0.79354 1.03387 1.01953 1.47981 1.07441 1.07317 1.72825 1.22258 0.98077 0.83660 1.03621 1.21339 0.91459 0.82871 0.74781 1.90691 1.71613 1.33142 1.51823 1.21428 0.88952 0.99912 1.01809 0.85940 1.21268 0.94873 0.95815 1.01665 1.22067 0.94440 1.02843 0.98133 1.20990 0.77031 1.00556 0.97246 0.90193 1.55393 1.15733 1.33545 1.81420 1.01661 0.72761 0.73181 0.73858 1.93639 1.31666 1.83672 1.86375 1.93551 1.78659 1.52982 1.73038 1.30651 1.15385 1.04164 1.25379 1.19067 0.92613 0.92987 0.93708 1.25642 0.85846 1.02017 1.10465 1.86719 1.22285 1.41869 1.83399 0.94305 0.89653 0.73348 0.74042 1.21531 1.00512 0.99844 0.94614 1.21856 0.92037 0.91686 1.01781 1.21701 1.00544 1.00850 0.92481 1.21236 0.92372 0.94552 0.98003 1.21908 0.94147 0.94584 1.05076 1.21584 0.95697 1.03612 0.93626 0.92844 0.88431 0.92879 0.89660 0.88914 0.90503 0.92729 0.92554 0.92349 0.89182 0.73093 0.88314 0.75498 1.20141 1.22088 0.83233 0.81753 0.82523 0.84055 0.88099 0.87944 0.87992 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.13 10.41 127.77 1.33 1.20 16 2 N -0.62 1.27 3.27 -871.88 -2.85 -1.58 16 3 C 0.07 -0.73 9.61 127.77 1.23 0.50 16 4 C 0.51 1.72 6.90 87.66 0.60 2.33 16 5 O -0.59 -8.26 15.57 -3.03 -0.05 -8.31 16 6 C -0.10 0.39 1.81 -11.54 -0.02 0.37 16 7 H 0.12 -1.12 7.12 -2.38 -0.02 -1.14 16 8 C -0.10 -0.11 4.62 30.60 0.14 0.03 16 9 C -0.14 0.20 5.53 30.59 0.17 0.37 16 10 C 0.15 -0.72 2.65 44.99 0.12 -0.60 16 11 H 0.08 -0.25 7.85 -2.38 -0.02 -0.27 16 12 N -1.10 4.32 4.17 -169.39 -0.71 3.61 16 13 S 2.69 15.59 4.90 -56.49 -0.28 15.31 16 14 O -0.96 -10.82 15.06 -119.19 -1.79 -12.61 16 15 O -0.99 -12.15 16.26 -128.00 -2.08 -14.23 16 16 C -0.67 -2.96 5.74 22.27 0.13 -2.84 16 17 C 0.02 0.03 5.28 -19.86 -0.10 -0.07 16 18 C -0.13 0.17 1.85 71.23 0.13 0.30 16 19 O -0.53 -2.36 10.46 -127.51 -1.33 -3.69 16 20 Si 0.78 -3.97 30.31 68.60 2.08 -1.89 16 21 C -0.15 0.11 8.66 22.27 0.19 0.30 16 22 C -0.06 0.15 10.05 22.27 0.22 0.37 16 23 C -0.14 0.10 10.05 22.27 0.22 0.32 16 24 C -0.04 -0.15 9.55 22.27 0.21 0.06 16 25 C -0.12 1.40 5.46 30.61 0.17 1.56 16 26 C -0.11 0.95 5.08 30.61 0.16 1.10 16 27 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.10 -0.73 7.93 -2.38 -0.02 -0.75 16 29 H 0.05 0.19 7.40 -2.39 -0.02 0.17 16 30 H 0.09 -1.24 5.67 -2.39 -0.01 -1.25 16 31 H 0.09 -1.24 7.81 -2.39 -0.02 -1.26 16 32 H 0.08 -1.01 7.38 -2.39 -0.02 -1.03 16 33 H 0.05 0.30 7.93 -2.39 -0.02 0.29 16 34 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.06 0.24 7.66 -2.39 -0.02 0.22 16 36 H 0.09 -0.48 8.14 -2.38 -0.02 -0.49 16 37 H 0.43 -4.14 8.48 -96.75 -0.82 -4.96 16 38 H 0.10 -0.71 5.75 -2.39 -0.01 -0.73 16 39 H 0.39 -1.29 8.86 -74.06 -0.66 -1.95 16 40 H -0.28 0.51 7.11 99.48 0.71 1.21 16 41 H -0.29 -0.52 6.72 99.48 0.67 0.15 16 42 H 0.15 -0.62 4.91 -2.91 -0.01 -0.63 16 43 H 0.16 -1.46 8.06 -2.91 -0.02 -1.48 16 44 H 0.16 -0.87 8.06 -2.91 -0.02 -0.90 16 45 H 0.14 0.49 7.34 -2.91 -0.02 0.47 16 46 H 0.10 -1.59 8.14 -2.39 -0.02 -1.61 16 47 H 0.10 -1.57 8.14 -2.39 -0.02 -1.59 16 48 H 0.10 -1.35 5.53 -2.39 -0.01 -1.36 16 49 H 0.06 -0.31 8.14 -2.38 -0.02 -0.33 16 Total: 0.00 -34.58 389.62 -2.60 -37.18 By element: Atomic # 1 Polarization: -18.63 SS G_CDS: -0.49 Total: -19.11 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 4.90 Total: 5.32 kcal Atomic # 7 Polarization: 5.59 SS G_CDS: -3.56 Total: 2.03 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -5.26 Total: -38.84 kcal Atomic # 14 Polarization: -3.97 SS G_CDS: 2.08 Total: -1.89 kcal Atomic # 16 Polarization: 15.59 SS G_CDS: -0.28 Total: 15.31 kcal Total: -34.58 -2.60 -37.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310140_2726874.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.663 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds