Wall clock time and date at job start Mon Mar 8 2021 09:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47278 * 2 1 4 4 C 1.52998 * 109.46761 * 240.00609 * 2 1 3 5 5 O 1.45199 * 109.47212 * 120.00578 * 2 1 3 6 6 C 1.34635 * 116.99940 * 60.00066 * 5 2 1 7 7 O 1.21514 * 120.00209 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00162 * 180.02562 * 6 5 2 9 9 C 1.46501 * 120.00480 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.47414 * 179.97438 * 9 8 6 11 11 C 1.53910 * 113.59032 * 175.00265 * 10 9 8 12 12 C 1.53069 * 86.84956 * 139.54348 * 11 10 9 13 13 C 1.52783 * 120.91797 * 209.77087 * 12 11 10 14 14 C 1.53883 * 83.00984 * 208.22964 * 13 12 11 15 15 N 1.46287 * 120.98848 * 100.33429 * 12 11 10 16 16 S 1.65598 * 136.17578 * 332.51513 * 15 12 11 17 17 O 1.42096 * 106.40351 * 336.46694 * 16 15 12 18 18 O 1.42095 * 106.40203 * 203.54292 * 16 15 12 19 19 C 1.76197 * 107.21738 * 90.00433 * 16 15 12 20 20 C 1.33387 * 125.20468 * 149.99574 * 19 16 15 21 21 C 1.50702 * 122.54113 * 359.97438 * 20 19 16 22 22 O 1.42903 * 109.47007 * 285.00050 * 21 20 19 23 23 Si 1.86300 * 109.47301 * 164.99536 * 21 20 19 24 24 C 1.38422 * 114.92166 * 180.24549 * 20 19 16 25 25 C 1.33391 * 114.92147 * 359.50219 * 24 20 19 26 26 S 1.75884 * 109.59282 * 0.47081 * 25 24 20 27 27 C 1.53073 * 87.84966 * 334.99151 * 12 11 10 28 28 H 1.09003 * 109.46596 * 299.99750 * 1 2 3 29 29 H 1.09001 * 109.47275 * 59.98880 * 1 2 3 30 30 H 1.08994 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47071 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47209 * 300.00555 * 3 2 1 33 33 H 1.08999 * 109.46843 * 60.01008 * 3 2 1 34 34 H 1.09005 * 109.47411 * 299.99717 * 4 2 1 35 35 H 1.09002 * 109.47677 * 59.99938 * 4 2 1 36 36 H 1.09005 * 109.47347 * 179.97438 * 4 2 1 37 37 H 0.97005 * 120.00056 * 359.97438 * 8 6 5 38 38 H 1.08999 * 109.46906 * 59.99924 * 9 8 6 39 39 H 1.08996 * 109.46798 * 299.99997 * 9 8 6 40 40 H 1.09001 * 112.83165 * 43.88681 * 10 9 8 41 41 H 1.09006 * 113.65449 * 25.05236 * 11 10 9 42 42 H 1.09007 * 113.73623 * 254.03967 * 11 10 9 43 43 H 1.08999 * 114.27633 * 321.96311 * 13 12 11 44 44 H 1.08996 * 114.27475 * 94.80315 * 13 12 11 45 45 H 1.09001 * 113.42929 * 270.76873 * 14 13 12 46 46 H 1.08994 * 113.51588 * 140.36708 * 14 13 12 47 47 H 1.09004 * 109.46923 * 44.99618 * 21 20 19 48 48 H 0.96700 * 113.99509 * 299.99566 * 22 21 20 49 49 H 1.48502 * 109.99691 * 180.02562 * 23 21 20 50 50 H 1.48495 * 109.99988 * 301.31758 * 23 21 20 51 51 H 1.08006 * 122.54057 * 179.72723 * 24 20 19 52 52 H 1.08005 * 125.20376 * 180.20466 * 25 24 20 53 53 H 1.09002 * 113.64628 * 139.49192 * 27 12 11 54 54 H 1.08994 * 113.65625 * 270.51820 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9724 1.3381 7 8 0.9509 -2.5095 0.5037 8 7 2.0672 -2.6656 2.4168 9 6 1.6732 -4.0668 2.5832 10 6 2.2734 -4.6149 3.8794 11 6 1.8189 -6.0475 4.2111 12 6 3.2614 -6.3133 4.6489 13 6 3.8728 -7.7086 4.5318 14 6 4.7223 -7.2312 5.7229 15 7 3.6335 -6.3007 6.0636 16 16 3.0798 -5.5615 7.4381 17 8 2.3848 -4.3965 7.0150 18 8 4.1739 -5.5278 8.3442 19 6 1.8736 -6.6278 8.1541 20 6 1.6071 -6.7217 9.4577 21 6 2.3308 -5.9014 10.4942 22 8 3.6451 -6.4286 10.6862 23 14 1.3941 -5.9670 12.1032 24 6 0.6195 -7.6340 9.7869 25 6 0.0766 -8.2734 8.7497 26 16 0.8363 -7.7308 7.2590 27 6 3.6935 -5.1841 3.7103 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9562 0.8901 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7208 -1.2497 37 1 2.6268 -2.2368 3.0831 38 1 2.0396 -4.6501 1.7385 39 1 0.5863 -4.1356 2.6281 40 1 2.1778 -3.9224 4.7157 41 1 1.5141 -6.6231 3.3369 42 1 1.0975 -6.1013 5.0265 43 1 3.1843 -8.5207 4.7651 44 1 4.4405 -7.8736 3.6161 45 1 5.6434 -6.7302 5.4251 46 1 4.8861 -8.0013 6.4766 47 1 2.4000 -4.8675 10.1559 48 1 3.6601 -7.3472 10.9879 49 1 2.0974 -5.1613 13.1335 50 1 0.0152 -5.4509 11.9095 51 1 0.3092 -7.8119 10.8060 52 1 -0.7064 -9.0144 8.8156 53 1 4.4730 -4.5450 4.1250 54 1 3.9128 -5.5181 2.6962 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17310142_13652106.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:37:13 Heat of formation + Delta-G solvation = -75.308426 kcal Electronic energy + Delta-G solvation = -39370.628354 eV Core-core repulsion = 34337.861935 eV Total energy + Delta-G solvation = -5032.766419 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.136 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.01268 -41.65255 -40.04760 -38.70186 -38.36942 -37.24184 -37.10562 -36.97150 -35.49066 -34.57677 -31.42898 -29.88233 -28.76383 -28.39335 -28.33239 -28.05484 -26.92124 -24.68994 -24.32944 -23.15186 -22.26819 -21.73018 -20.95415 -20.67479 -19.81781 -19.14049 -18.85373 -18.36972 -17.89429 -17.56406 -17.36720 -17.22883 -16.82965 -16.60292 -16.49481 -16.00587 -15.84756 -15.78079 -15.53060 -15.44868 -15.16397 -15.04956 -14.79029 -14.47389 -14.31020 -14.02326 -13.97134 -13.76898 -13.72609 -13.50810 -13.38301 -13.34088 -13.25135 -13.17978 -12.95892 -12.93688 -12.89972 -12.75145 -12.62416 -12.57147 -12.43398 -12.36192 -12.25858 -11.98200 -11.87966 -11.77863 -11.61156 -11.42470 -11.17028 -10.94095 -10.55244 -10.41869 -10.24894 -10.14283 -9.62662 -5.14780 -0.92437 -0.65731 0.23820 0.67099 1.12386 1.15400 1.25845 1.57550 1.72102 1.77802 1.88894 2.50027 3.05473 3.09009 3.29212 3.38707 3.46185 3.47959 3.55504 3.66256 3.71492 3.72971 3.76710 3.91530 3.98852 4.04226 4.15676 4.24418 4.30139 4.41704 4.47729 4.48843 4.58621 4.60829 4.65403 4.70137 4.73350 4.74290 4.75381 4.78124 4.82056 4.84335 4.87943 4.90521 4.93504 4.97010 5.05864 5.08858 5.09912 5.20952 5.24451 5.28247 5.32815 5.44471 5.54290 5.65394 6.33733 6.73038 7.28914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.178 4.178 5 O -0.374 6.374 6 C 0.643 3.357 7 O -0.592 6.592 8 N -0.704 5.704 9 C 0.153 3.847 10 C -0.135 4.135 11 C -0.135 4.135 12 C 0.154 3.846 13 C -0.116 4.116 14 C 0.121 3.879 15 N -1.028 6.028 16 S 2.729 3.271 17 O -0.983 6.983 18 O -0.955 6.955 19 C -0.795 4.795 20 C -0.008 4.008 21 C -0.106 4.106 22 O -0.527 6.527 23 Si 0.814 3.186 24 C -0.169 4.169 25 C -0.152 4.152 26 S 0.231 5.769 27 C -0.126 4.126 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.412 0.588 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.392 0.608 49 H -0.291 1.291 50 H -0.275 1.275 51 H 0.187 0.813 52 H 0.215 0.785 53 H 0.069 0.931 54 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 -9.334 -1.043 9.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.195 4.195 4 C -0.235 4.235 5 O -0.288 6.288 6 C 0.396 3.604 7 O -0.483 6.483 8 N -0.364 5.364 9 C 0.032 3.968 10 C -0.154 4.154 11 C -0.174 4.174 12 C 0.066 3.934 13 C -0.156 4.156 14 C -0.002 4.002 15 N -0.869 5.869 16 S 2.821 3.179 17 O -0.973 6.973 18 O -0.946 6.946 19 C -0.998 4.998 20 C -0.026 4.026 21 C -0.216 4.216 22 O -0.334 6.334 23 Si 0.716 3.284 24 C -0.198 4.198 25 C -0.289 4.289 26 S 0.498 5.502 27 C -0.165 4.165 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.248 0.752 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.155 0.845 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.241 0.759 49 H -0.219 1.219 50 H -0.201 1.201 51 H 0.204 0.796 52 H 0.232 0.768 53 H 0.088 0.912 54 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.632 -7.964 -2.103 8.397 hybrid contribution 0.063 1.030 1.591 1.896 sum -1.569 -6.933 -0.513 7.127 Atomic orbital electron populations 1.22476 0.94091 1.03735 1.03429 1.22375 0.94467 0.92593 0.81630 1.21897 1.02461 0.90991 1.04178 1.22462 1.01649 1.02307 0.97126 1.86317 1.71632 1.23446 1.47439 1.18312 0.78795 0.80749 0.82495 1.90894 1.42129 1.70983 1.44268 1.44847 1.55200 1.13211 1.23100 1.21405 0.99717 0.78168 0.97543 1.22913 0.97723 0.97711 0.97028 1.23373 0.95566 0.95184 1.03240 1.21957 0.96494 0.96652 0.78256 1.23429 0.98674 0.94172 0.99303 1.22810 0.90023 0.90035 0.97361 1.59833 1.44249 1.64076 1.18739 1.00500 0.73149 0.72465 0.71798 1.93541 1.76159 1.45502 1.82136 1.93652 1.51906 1.85947 1.63049 1.35518 1.27864 1.27690 1.08736 1.19354 0.95163 0.95711 0.92409 1.25592 0.90815 0.97183 1.08021 1.86772 1.23056 1.33583 1.89969 0.93729 0.74606 0.88081 0.71985 1.20437 0.98294 0.98408 1.02655 1.26679 1.03744 1.03545 0.94937 1.83914 1.27594 1.30893 1.07840 1.23374 0.95766 0.96242 1.01118 0.92294 0.89259 0.91681 0.91182 0.88116 0.91493 0.91586 0.89353 0.91897 0.75197 0.89630 0.91784 0.89198 0.84507 0.91766 0.86944 0.86411 0.88740 0.89439 0.90246 0.75897 1.21895 1.20148 0.79611 0.76843 0.91249 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 8.37 71.98 0.60 -0.32 16 2 C 0.13 0.62 1.13 -10.79 -0.01 0.61 16 3 C -0.14 0.01 8.85 71.98 0.64 0.64 16 4 C -0.18 -0.75 8.37 71.98 0.60 -0.15 16 5 O -0.37 -3.15 9.94 -55.44 -0.55 -3.70 16 6 C 0.64 5.98 8.06 129.79 1.05 7.02 16 7 O -0.59 -7.94 11.88 19.80 0.24 -7.71 16 8 N -0.70 -2.91 5.56 -590.87 -3.29 -6.19 16 9 C 0.15 0.11 5.51 86.38 0.48 0.59 16 10 C -0.13 0.07 3.71 -10.18 -0.04 0.03 16 11 C -0.13 0.53 7.52 30.92 0.23 0.76 16 12 C 0.15 -0.64 1.52 -0.57 0.00 -0.64 16 13 C -0.12 1.15 8.24 30.82 0.25 1.40 16 14 C 0.12 -0.60 8.74 82.36 0.72 0.12 16 15 N -1.03 -0.95 4.23 -514.63 -2.18 -3.13 16 16 S 2.73 24.86 5.94 -56.49 -0.34 24.53 16 17 O -0.98 -14.12 16.49 -128.00 -2.11 -16.23 16 18 O -0.96 -14.64 15.11 -119.73 -1.81 -16.45 16 19 C -0.80 -3.68 6.48 66.72 0.43 -3.25 16 20 C -0.01 -0.02 5.13 -20.92 -0.11 -0.13 16 21 C -0.11 -0.57 1.87 71.24 0.13 -0.44 16 22 O -0.53 -3.39 11.04 -129.07 -1.43 -4.81 16 23 Si 0.81 -0.72 30.25 68.60 2.08 1.36 16 24 C -0.17 0.68 8.74 21.22 0.19 0.86 16 25 C -0.15 0.96 11.23 66.72 0.75 1.71 16 26 S 0.23 -0.61 22.35 -56.49 -1.26 -1.87 16 27 C -0.13 0.53 7.51 30.93 0.23 0.76 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.06 0.66 5.88 -2.39 -0.01 0.65 16 31 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 33 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.07 0.60 5.88 -2.38 -0.01 0.59 16 35 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 37 H 0.41 0.77 8.58 -92.70 -0.80 -0.03 16 38 H 0.09 -0.10 7.85 -2.39 -0.02 -0.12 16 39 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.09 0.50 6.60 -2.39 -0.02 0.49 16 41 H 0.14 -1.29 8.10 -2.38 -0.02 -1.31 16 42 H 0.06 -0.09 7.12 -2.38 -0.02 -0.11 16 43 H 0.11 -1.34 8.14 -2.39 -0.02 -1.36 16 44 H 0.12 -1.65 8.14 -2.39 -0.02 -1.67 16 45 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 47 H 0.08 0.83 7.60 -2.38 -0.02 0.81 16 48 H 0.39 -1.65 8.70 -74.06 -0.64 -2.29 16 49 H -0.29 -1.86 7.11 99.48 0.71 -1.15 16 50 H -0.28 -0.77 7.11 99.48 0.71 -0.07 16 51 H 0.19 -2.00 5.74 -2.91 -0.02 -2.01 16 52 H 0.21 -2.94 8.06 -2.91 -0.02 -2.96 16 53 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 54 H 0.13 -1.15 7.90 -2.39 -0.02 -1.17 16 Total: 0.00 -32.40 451.85 -4.96 -37.36 By element: Atomic # 1 Polarization: -12.28 SS G_CDS: -0.45 Total: -12.73 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.14 Total: 9.58 kcal Atomic # 7 Polarization: -3.85 SS G_CDS: -5.46 Total: -9.32 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -5.66 Total: -48.90 kcal Atomic # 14 Polarization: -0.72 SS G_CDS: 2.08 Total: 1.36 kcal Atomic # 16 Polarization: 24.25 SS G_CDS: -1.60 Total: 22.66 kcal Total: -32.40 -4.96 -37.36 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310142_13652106.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.949 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds