Wall clock time and date at job start Mon Mar 8 2021 09:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47345 * 2 1 4 4 C 1.52997 * 109.47357 * 240.00069 * 2 1 3 5 5 O 1.45203 * 109.47213 * 120.00017 * 2 1 3 6 6 C 1.34642 * 116.99897 * 60.00081 * 5 2 1 7 7 O 1.21513 * 119.99719 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99715 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99627 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47313 * 179.97438 * 9 8 6 11 11 C 1.53974 * 113.57427 * 274.25718 * 10 9 8 12 12 C 1.52946 * 86.68586 * 220.76850 * 11 10 9 13 13 C 1.52971 * 121.22822 * 258.70689 * 12 11 10 14 14 C 1.54127 * 85.91721 * 257.50549 * 13 12 11 15 15 N 1.46524 * 121.40955 * 151.00104 * 12 11 10 16 16 S 1.65603 * 134.67922 * 281.33260 * 15 12 11 17 17 O 1.42100 * 106.40242 * 198.90119 * 16 15 12 18 18 O 1.42103 * 106.39838 * 331.81767 * 16 15 12 19 19 C 1.76200 * 107.21740 * 85.35848 * 16 15 12 20 20 C 1.33384 * 122.53976 * 195.26698 * 19 16 15 21 21 C 1.50699 * 125.20133 * 359.97438 * 20 19 16 22 22 O 1.42905 * 109.47443 * 320.88142 * 21 20 19 23 23 Si 1.86298 * 109.47295 * 200.88115 * 21 20 19 24 24 S 1.75880 * 109.59423 * 180.02562 * 20 19 16 25 25 C 1.75884 * 90.97036 * 359.97438 * 24 20 19 26 26 C 1.33389 * 109.59434 * 359.73703 * 25 24 20 27 27 C 1.52786 * 88.19620 * 24.76887 * 12 11 10 28 28 H 1.08997 * 109.47396 * 300.00165 * 1 2 3 29 29 H 1.09001 * 109.47179 * 60.00357 * 1 2 3 30 30 H 1.09005 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47538 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47063 * 300.00223 * 3 2 1 33 33 H 1.09006 * 109.47118 * 59.99796 * 3 2 1 34 34 H 1.09005 * 109.47202 * 300.00049 * 4 2 1 35 35 H 1.09001 * 109.47324 * 59.99663 * 4 2 1 36 36 H 1.09006 * 109.47511 * 180.02562 * 4 2 1 37 37 H 0.96998 * 120.00494 * 359.97438 * 8 6 5 38 38 H 1.09002 * 109.46950 * 299.99849 * 9 8 6 39 39 H 1.08999 * 109.47292 * 59.99318 * 9 8 6 40 40 H 1.09002 * 112.81645 * 45.32685 * 10 9 8 41 41 H 1.09000 * 113.66684 * 335.20689 * 11 10 9 42 42 H 1.08998 * 113.67411 * 106.27646 * 11 10 9 43 43 H 1.09005 * 113.79645 * 11.75517 * 13 12 11 44 44 H 1.08992 * 113.80610 * 143.24881 * 13 12 11 45 45 H 1.09000 * 113.73348 * 91.53322 * 14 13 12 46 46 H 1.09005 * 113.73203 * 222.70164 * 14 13 12 47 47 H 1.09000 * 109.47123 * 80.88300 * 21 20 19 48 48 H 0.96696 * 113.99448 * 294.25223 * 22 21 20 49 49 H 1.48506 * 110.00127 * 58.67974 * 23 21 20 50 50 H 1.48498 * 110.00502 * 180.02562 * 23 21 20 51 51 H 1.08002 * 125.20407 * 180.02562 * 25 24 20 52 52 H 1.08002 * 122.54233 * 180.24050 * 26 25 24 53 53 H 1.09005 * 113.67114 * 220.77233 * 27 12 11 54 54 H 1.08995 * 113.67178 * 89.69253 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0672 -2.6654 2.4171 9 6 1.6731 -4.0666 2.5836 10 6 2.2733 -4.6147 3.8799 11 6 3.7081 -5.1491 3.7165 12 6 3.2892 -6.2994 4.6333 13 6 3.6769 -6.3157 6.1130 14 6 4.7572 -7.3366 5.7052 15 7 3.9088 -7.6231 4.5294 16 16 3.7305 -8.9154 3.5094 17 8 4.2804 -10.0384 4.1845 18 8 2.3910 -8.8719 3.0371 19 6 4.7611 -8.6220 2.1107 20 6 4.6381 -9.3066 0.9726 21 6 3.6314 -10.3993 0.7206 22 8 3.4929 -11.1999 1.8963 23 14 4.2128 -11.4658 -0.6919 24 16 5.8313 -8.7399 -0.1886 25 6 6.4480 -7.5700 0.9710 26 6 5.7559 -7.6593 2.1077 27 6 1.8457 -6.0601 4.1937 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 2.6268 -2.2366 3.0834 38 1 0.5862 -4.1354 2.6285 39 1 2.0395 -4.6499 1.7389 40 1 2.1554 -3.9325 4.7218 41 1 3.9448 -5.4635 2.7000 42 1 4.4691 -4.4990 4.1483 43 1 4.0798 -5.3688 6.4725 44 1 2.9066 -6.7271 6.7651 45 1 5.7164 -6.8836 5.4542 46 1 4.8512 -8.1751 6.3953 47 1 2.6685 -9.9551 0.4681 48 1 4.2891 -11.6963 2.1300 49 1 5.5396 -12.0519 -0.3731 50 1 3.2284 -12.5470 -0.9508 51 1 7.2596 -6.8811 0.7887 52 1 5.9589 -7.0311 2.9624 53 1 1.1226 -6.1360 5.0059 54 1 1.5562 -6.6320 3.3121 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17310142_14772022.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:37:19 Heat of formation + Delta-G solvation = -83.443724 kcal Electronic energy + Delta-G solvation = -39870.936380 eV Core-core repulsion = 34837.817188 eV Total energy + Delta-G solvation = -5033.119192 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.136 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.92587 -41.54487 -39.76224 -38.64716 -38.24454 -37.87919 -37.19974 -36.85577 -35.47815 -34.55460 -31.92885 -29.66702 -28.79722 -28.36857 -28.29146 -27.59265 -26.86841 -24.75716 -24.45277 -23.12327 -22.34921 -21.68959 -21.29551 -20.60380 -19.58573 -19.11437 -18.71737 -18.39615 -17.80499 -17.52511 -17.34224 -17.28171 -17.20429 -16.72781 -16.52300 -16.33262 -15.80473 -15.63109 -15.51854 -15.36011 -15.26870 -15.16001 -14.68039 -14.47463 -14.33147 -14.24101 -14.20040 -13.89249 -13.53618 -13.37162 -13.25581 -13.22925 -13.13478 -13.02828 -12.91266 -12.86167 -12.84329 -12.78130 -12.69261 -12.57844 -12.44088 -12.35191 -12.34124 -12.13949 -11.76583 -11.62500 -11.51124 -11.38937 -11.31151 -11.19920 -11.09893 -10.21793 -10.16126 -10.07108 -9.76797 -5.27162 -0.78204 -0.55169 0.31717 0.60817 0.95959 1.12889 1.16970 1.42019 1.71083 1.76928 1.82876 2.68094 2.94138 3.11979 3.20755 3.26603 3.38022 3.46145 3.55294 3.64281 3.74944 3.77582 3.80046 3.94987 4.01324 4.05640 4.10867 4.28093 4.29581 4.45258 4.48242 4.54398 4.60921 4.61167 4.66667 4.68706 4.76633 4.77150 4.79386 4.82905 4.85072 4.86679 4.88269 4.97492 5.00107 5.04074 5.08180 5.09862 5.10928 5.23783 5.27188 5.28746 5.35172 5.44612 5.60051 5.68569 6.02541 6.42791 7.36396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.641 3.359 7 O -0.598 6.598 8 N -0.694 5.694 9 C 0.149 3.851 10 C -0.100 4.100 11 C -0.130 4.130 12 C 0.154 3.846 13 C -0.106 4.106 14 C 0.113 3.887 15 N -1.026 6.026 16 S 2.728 3.272 17 O -0.987 6.987 18 O -0.976 6.976 19 C -0.679 4.679 20 C -0.125 4.125 21 C -0.099 4.099 22 O -0.545 6.545 23 Si 0.765 3.235 24 S 0.188 5.812 25 C -0.206 4.206 26 C -0.093 4.093 27 C -0.150 4.150 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.421 0.579 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.125 0.875 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.144 0.856 48 H 0.392 0.608 49 H -0.254 1.254 50 H -0.260 1.260 51 H 0.204 0.796 52 H 0.170 0.830 53 H 0.091 0.909 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.777 8.667 1.164 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.394 3.606 7 O -0.490 6.490 8 N -0.354 5.354 9 C 0.027 3.973 10 C -0.119 4.119 11 C -0.169 4.169 12 C 0.067 3.933 13 C -0.146 4.146 14 C -0.011 4.011 15 N -0.866 5.866 16 S 2.820 3.180 17 O -0.978 6.978 18 O -0.966 6.966 19 C -0.780 4.780 20 C -0.246 4.246 21 C -0.207 4.207 22 O -0.355 6.355 23 Si 0.662 3.338 24 S 0.452 5.548 25 C -0.341 4.341 26 C -0.121 4.121 27 C -0.189 4.189 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.258 0.742 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.154 0.846 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.143 0.857 44 H 0.116 0.884 45 H 0.132 0.868 46 H 0.101 0.899 47 H 0.162 0.838 48 H 0.243 0.757 49 H -0.179 1.179 50 H -0.185 1.185 51 H 0.221 0.779 52 H 0.187 0.813 53 H 0.110 0.890 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.964 6.603 -1.081 8.963 hybrid contribution 0.204 -0.166 1.881 1.899 sum 6.167 6.438 0.800 8.951 Atomic orbital electron populations 1.22483 0.94249 1.03601 1.03517 1.22329 0.94322 0.92632 0.81548 1.21887 1.02530 0.90766 1.04237 1.22479 1.01719 1.02179 0.97403 1.86305 1.71508 1.23199 1.47181 1.18401 0.78797 0.80814 0.82606 1.90921 1.42420 1.71098 1.44520 1.44631 1.55223 1.12445 1.23136 1.21317 0.99792 0.78391 0.97815 1.22604 0.95987 0.96085 0.97272 1.23390 0.97649 0.95980 0.99877 1.22573 0.93730 0.80091 0.96933 1.23288 0.98092 1.01147 0.92036 1.23189 0.95714 0.98752 0.83433 1.60386 1.53677 1.29776 1.42753 1.00755 0.73051 0.72026 0.72148 1.93492 1.80780 1.49364 1.74153 1.93503 1.34992 1.86469 1.81677 1.29978 1.19088 1.09472 1.19431 1.25078 1.01038 1.00795 0.97689 1.25471 1.02455 0.94785 0.98026 1.86641 1.42707 1.62393 1.43741 0.94227 0.78838 0.81299 0.79469 1.84056 1.24630 1.30774 1.15340 1.26305 1.06333 1.05111 0.96383 1.19849 0.94039 0.97691 1.00536 1.23345 0.96869 0.95856 1.02870 0.91844 0.89561 0.91966 0.91015 0.88449 0.91102 0.91961 0.89563 0.91753 0.74194 0.91942 0.92516 0.84635 0.90063 0.86461 0.85667 0.88381 0.86796 0.89923 0.83814 0.75692 1.17908 1.18484 0.77885 0.81259 0.89031 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.59 8.37 71.98 0.60 0.01 16 2 C 0.13 0.31 1.13 -10.80 -0.01 0.30 16 3 C -0.14 0.40 8.85 71.98 0.64 1.04 16 4 C -0.18 -0.53 8.37 71.98 0.60 0.08 16 5 O -0.37 -1.63 9.94 -55.51 -0.55 -2.18 16 6 C 0.64 3.94 8.06 129.79 1.05 4.98 16 7 O -0.60 -7.60 11.88 19.80 0.24 -7.37 16 8 N -0.69 0.87 5.56 -590.83 -3.29 -2.42 16 9 C 0.15 -0.15 5.50 86.38 0.47 0.32 16 10 C -0.10 0.72 3.75 -10.15 -0.04 0.68 16 11 C -0.13 1.08 7.54 30.91 0.23 1.31 16 12 C 0.15 -0.72 1.68 3.37 0.01 -0.71 16 13 C -0.11 1.01 8.05 30.98 0.25 1.26 16 14 C 0.11 -0.70 8.96 86.39 0.77 0.07 16 15 N -1.03 -0.68 3.54 -484.44 -1.71 -2.40 16 16 S 2.73 26.41 4.68 -56.49 -0.26 26.15 16 17 O -0.99 -15.34 16.87 -120.72 -2.04 -17.37 16 18 O -0.98 -15.26 15.46 -122.77 -1.90 -17.16 16 19 C -0.68 -3.81 5.72 21.22 0.12 -3.69 16 20 C -0.13 -0.62 5.77 24.59 0.14 -0.48 16 21 C -0.10 -0.58 2.36 71.24 0.17 -0.41 16 22 O -0.55 -5.85 9.71 -125.05 -1.21 -7.06 16 23 Si 0.76 0.38 31.10 68.60 2.13 2.51 16 24 S 0.19 -0.21 20.87 -56.49 -1.18 -1.38 16 25 C -0.21 0.61 11.23 66.72 0.75 1.36 16 26 C -0.09 0.04 9.74 21.22 0.21 0.25 16 27 C -0.15 0.24 7.24 30.85 0.22 0.46 16 28 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 0.56 5.88 -2.38 -0.01 0.55 16 31 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 34 H 0.06 0.54 5.88 -2.38 -0.01 0.53 16 35 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 37 H 0.42 -3.11 8.58 -92.71 -0.80 -3.91 16 38 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.06 0.15 7.87 -2.39 -0.02 0.13 16 40 H 0.14 -1.68 8.14 -2.39 -0.02 -1.70 16 41 H 0.08 -0.42 7.92 -2.39 -0.02 -0.44 16 42 H 0.12 -1.66 8.14 -2.39 -0.02 -1.68 16 43 H 0.13 -1.98 8.14 -2.38 -0.02 -2.00 16 44 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 45 H 0.11 -1.36 8.14 -2.39 -0.02 -1.38 16 46 H 0.08 -0.38 8.14 -2.38 -0.02 -0.40 16 47 H 0.14 0.80 7.96 -2.39 -0.02 0.78 16 48 H 0.39 2.25 8.51 -74.06 -0.63 1.62 16 49 H -0.25 -0.71 7.11 99.48 0.71 -0.01 16 50 H -0.26 -1.44 7.11 99.48 0.71 -0.73 16 51 H 0.20 -1.91 8.06 -2.91 -0.02 -1.93 16 52 H 0.17 -1.02 7.77 -2.91 -0.02 -1.04 16 53 H 0.09 -0.26 8.14 -2.38 -0.02 -0.28 16 54 H 0.08 0.39 6.87 -2.39 -0.02 0.38 16 Total: 0.00 -31.07 453.56 -4.04 -35.11 By element: Atomic # 1 Polarization: -12.80 SS G_CDS: -0.45 Total: -13.25 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 6.19 Total: 6.83 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -5.00 Total: -4.81 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -5.47 Total: -51.15 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: 2.13 Total: 2.51 kcal Atomic # 16 Polarization: 26.20 SS G_CDS: -1.44 Total: 24.76 kcal Total: -31.07 -4.04 -35.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310142_14772022.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.332 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds