Wall clock time and date at job start Mon Mar 8 2021 09:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47259 * 2 1 4 4 C 1.53005 * 109.46748 * 239.99986 * 2 1 3 5 5 O 1.45200 * 109.47299 * 120.00432 * 2 1 3 6 6 C 1.34628 * 117.00329 * 59.99606 * 5 2 1 7 7 O 1.21511 * 120.00290 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99921 * 180.02562 * 6 5 2 9 9 C 1.46507 * 119.99847 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46876 * 179.97438 * 9 8 6 11 11 C 1.53914 * 113.58394 * 174.99858 * 10 9 8 12 12 C 1.53077 * 86.84475 * 139.54167 * 11 10 9 13 13 C 1.53069 * 120.93510 * 209.63064 * 12 11 10 14 14 C 1.53623 * 82.99758 * 259.78397 * 13 12 11 15 15 N 1.46283 * 120.98662 * 100.33561 * 12 11 10 16 16 S 1.65596 * 136.17892 * 279.41072 * 15 12 11 17 17 O 1.42102 * 106.39933 * 156.09506 * 16 15 12 18 18 O 1.42097 * 106.40256 * 23.17447 * 16 15 12 19 19 C 1.76198 * 107.21738 * 269.63162 * 16 15 12 20 20 C 1.33390 * 122.54107 * 270.02076 * 19 16 15 21 21 S 1.75884 * 109.59249 * 179.73567 * 20 19 16 22 22 C 1.75883 * 90.97180 * 0.32046 * 21 20 19 23 23 C 1.50693 * 125.20254 * 179.97438 * 22 21 20 24 24 O 1.42907 * 109.47661 * 119.69255 * 23 22 21 25 25 Si 1.86298 * 109.47618 * 359.68946 * 23 22 21 26 26 C 1.33392 * 109.59298 * 359.67912 * 22 21 20 27 27 C 1.53075 * 87.85084 * 334.99404 * 12 11 10 28 28 H 1.09000 * 109.47048 * 299.99855 * 1 2 3 29 29 H 1.08999 * 109.47134 * 60.00058 * 1 2 3 30 30 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47596 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47295 * 300.00293 * 3 2 1 33 33 H 1.09000 * 109.46973 * 60.00099 * 3 2 1 34 34 H 1.08998 * 109.47193 * 299.99358 * 4 2 1 35 35 H 1.08999 * 109.47340 * 60.00081 * 4 2 1 36 36 H 1.09005 * 109.46768 * 180.02562 * 4 2 1 37 37 H 0.96997 * 120.00420 * 359.97438 * 8 6 5 38 38 H 1.08997 * 109.47166 * 59.99420 * 9 8 6 39 39 H 1.09002 * 109.46642 * 299.99944 * 9 8 6 40 40 H 1.09000 * 112.82795 * 43.88742 * 10 9 8 41 41 H 1.08999 * 113.65756 * 25.04851 * 11 10 9 42 42 H 1.09003 * 113.73651 * 254.03725 * 11 10 9 43 43 H 1.09003 * 114.49229 * 146.24996 * 13 12 11 44 44 H 1.09000 * 114.16966 * 13.29822 * 13 12 11 45 45 H 1.09004 * 113.43467 * 219.57566 * 14 13 12 46 46 H 1.09003 * 113.43239 * 89.25045 * 14 13 12 47 47 H 1.07999 * 125.20680 * 0.02562 * 20 19 16 48 48 H 1.09000 * 109.46936 * 239.68879 * 23 22 21 49 49 H 0.96697 * 114.00527 * 179.97438 * 24 23 22 50 50 H 1.48506 * 109.99834 * 298.68714 * 25 23 22 51 51 H 1.48502 * 110.00011 * 59.99978 * 25 23 22 52 52 H 1.07996 * 122.53741 * 180.26645 * 26 22 21 53 53 H 1.08999 * 113.65068 * 139.48858 * 27 12 11 54 54 H 1.09003 * 113.65264 * 270.51648 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0674 -2.6654 2.4171 9 6 1.6742 -4.0669 2.5831 10 6 2.2743 -4.6148 3.8794 11 6 1.8205 -6.0478 4.2106 12 6 3.2630 -6.3128 4.6490 13 6 3.8760 -7.7107 4.5347 14 6 3.5531 -7.7699 6.0355 15 7 3.6346 -6.3002 6.0638 16 16 3.9847 -5.1445 7.1969 17 8 3.7183 -5.7309 8.4636 18 8 3.3676 -3.9449 6.7505 19 6 5.7229 -4.8629 7.1347 20 6 6.5886 -5.5519 7.8798 21 16 8.2249 -5.0014 7.5438 22 6 7.6228 -3.8252 6.3829 23 6 8.4783 -2.8724 5.5885 24 8 8.2947 -3.1178 4.1927 25 14 10.2694 -3.1272 6.0334 26 6 6.2937 -3.9100 6.3087 27 6 3.6948 -5.1830 3.7107 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1393 36 1 3.1300 -0.7217 -1.2491 37 1 2.6270 -2.2366 3.0833 38 1 2.0412 -4.6498 1.7383 39 1 0.5873 -4.1365 2.6275 40 1 2.1779 -3.9225 4.7158 41 1 1.5164 -6.6233 3.3363 42 1 1.0988 -6.1022 5.0257 43 1 4.9415 -7.7195 4.3048 44 1 3.2969 -8.4034 3.9240 45 1 4.3276 -8.2585 6.6266 46 1 2.5552 -8.1528 6.2493 47 1 6.3254 -6.3320 8.5788 48 1 8.1892 -1.8468 5.8181 49 1 8.8159 -2.5390 3.6196 50 1 10.4796 -2.8441 7.4759 51 1 10.6759 -4.5218 5.7250 52 1 5.7074 -3.2829 5.6534 53 1 4.4737 -4.5434 4.1259 54 1 3.9147 -5.5167 2.6966 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17310142_15065232.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:37:25 Heat of formation + Delta-G solvation = -79.516301 kcal Electronic energy + Delta-G solvation = -39470.941496 eV Core-core repulsion = 34437.992609 eV Total energy + Delta-G solvation = -5032.948886 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.136 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.96262 -41.60525 -39.51369 -38.67875 -38.48557 -37.55906 -37.23762 -37.07212 -35.44816 -34.53223 -32.07464 -29.83198 -28.75197 -28.36281 -28.29626 -27.33752 -26.82973 -24.95380 -24.62651 -23.16652 -22.05055 -21.62481 -21.07497 -20.74274 -19.40928 -19.09969 -19.00136 -18.44407 -18.01141 -17.94536 -17.55553 -17.30974 -17.02864 -16.54805 -16.44664 -16.16413 -15.86646 -15.63540 -15.57345 -15.41332 -15.09924 -14.78772 -14.53874 -14.45456 -14.35317 -14.28976 -14.17179 -13.96752 -13.58072 -13.47623 -13.46578 -13.35118 -13.30654 -13.10196 -13.04432 -12.94985 -12.90926 -12.86384 -12.76802 -12.66669 -12.44753 -12.30937 -12.24993 -12.00026 -11.93154 -11.80369 -11.51442 -11.38521 -11.15166 -10.89838 -10.62704 -10.26796 -10.18621 -10.09207 -9.99047 -5.28380 -1.00700 -0.63055 0.17394 0.43991 0.85091 1.12082 1.19678 1.50898 1.76576 1.80161 1.86990 2.53059 2.87697 3.12348 3.25814 3.38263 3.47386 3.57185 3.62676 3.68827 3.74511 3.75402 3.80053 3.80509 3.94991 4.00896 4.10602 4.33452 4.36069 4.37462 4.48758 4.51891 4.53255 4.61668 4.63375 4.67480 4.73200 4.76563 4.76775 4.81122 4.82638 4.85025 4.87783 4.91704 4.93941 4.97126 5.04319 5.06674 5.10526 5.24021 5.27573 5.28469 5.36876 5.47263 5.58427 5.69070 6.39042 6.78737 7.33703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.372 6.372 6 C 0.643 3.357 7 O -0.593 6.593 8 N -0.703 5.703 9 C 0.153 3.847 10 C -0.132 4.132 11 C -0.119 4.119 12 C 0.158 3.842 13 C -0.121 4.121 14 C 0.120 3.880 15 N -1.026 6.026 16 S 2.738 3.262 17 O -0.983 6.983 18 O -0.966 6.966 19 C -0.687 4.687 20 C -0.082 4.082 21 S 0.127 5.873 22 C -0.193 4.193 23 C -0.043 4.043 24 O -0.557 6.557 25 Si 0.755 3.245 26 C -0.048 4.048 27 C -0.138 4.138 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.201 0.799 48 H 0.107 0.893 49 H 0.407 0.593 50 H -0.270 1.270 51 H -0.274 1.274 52 H 0.160 0.840 53 H 0.065 0.935 54 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.733 -0.740 -3.857 6.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.396 3.604 7 O -0.485 6.485 8 N -0.362 5.362 9 C 0.031 3.969 10 C -0.150 4.150 11 C -0.158 4.158 12 C 0.070 3.930 13 C -0.161 4.161 14 C -0.004 4.004 15 N -0.865 5.865 16 S 2.830 3.170 17 O -0.974 6.974 18 O -0.957 6.957 19 C -0.787 4.787 20 C -0.221 4.221 21 S 0.390 5.610 22 C -0.310 4.310 23 C -0.156 4.156 24 O -0.367 6.367 25 Si 0.658 3.342 26 C -0.077 4.077 27 C -0.177 4.177 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.148 0.852 42 H 0.094 0.906 43 H 0.119 0.881 44 H 0.133 0.867 45 H 0.105 0.895 46 H 0.118 0.882 47 H 0.218 0.782 48 H 0.124 0.876 49 H 0.259 0.741 50 H -0.196 1.196 51 H -0.200 1.200 52 H 0.177 0.823 53 H 0.084 0.916 54 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.496 -1.625 -2.304 7.082 hybrid contribution -1.029 0.682 0.207 1.251 sum 5.468 -0.943 -2.097 5.931 Atomic orbital electron populations 1.22481 0.94176 1.03700 1.03424 1.22361 0.94402 0.92623 0.81615 1.21892 1.02519 0.90906 1.04163 1.22467 1.01687 1.02268 0.97189 1.86313 1.71583 1.23395 1.47358 1.18321 0.78789 0.80771 0.82489 1.90896 1.42270 1.71003 1.44294 1.44836 1.55175 1.13119 1.23094 1.21400 0.99779 0.78172 0.97566 1.22925 0.97057 0.97893 0.97156 1.23227 0.95050 0.94528 1.03031 1.21941 0.96693 0.96159 0.78169 1.23384 1.02760 0.94334 0.95608 1.22779 1.03435 0.76317 0.97879 1.59777 1.82534 1.20411 1.23807 1.00328 0.72958 0.72030 0.71644 1.93552 1.84460 1.78582 1.40823 1.93522 1.74302 1.45923 1.81919 1.30030 1.27341 1.10206 1.11131 1.26152 0.95560 1.00780 0.99600 1.84512 1.08506 1.30937 1.37017 1.24074 0.97245 1.04446 1.05268 1.24157 1.08452 0.98460 0.84508 1.86442 1.72037 1.64165 1.14075 0.93778 0.76372 0.82719 0.81327 1.19641 0.93664 0.96917 0.97451 1.23405 0.96209 0.96698 1.01346 0.92205 0.89350 0.91752 0.91065 0.88230 0.91414 0.91704 0.89420 0.91831 0.75087 0.90213 0.91571 0.88401 0.85200 0.90571 0.88130 0.86653 0.89463 0.88177 0.78157 0.87583 0.74092 1.19602 1.20026 0.82253 0.91633 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 8.37 71.98 0.60 -0.23 16 2 C 0.13 0.53 1.13 -10.79 -0.01 0.51 16 3 C -0.14 0.14 8.85 71.98 0.64 0.78 16 4 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 5 O -0.37 -2.78 9.94 -55.37 -0.55 -3.33 16 6 C 0.64 5.60 8.06 129.79 1.05 6.64 16 7 O -0.59 -7.82 11.88 19.81 0.24 -7.58 16 8 N -0.70 -2.45 5.56 -590.84 -3.29 -5.74 16 9 C 0.15 0.05 5.51 86.38 0.48 0.53 16 10 C -0.13 0.19 3.71 -10.18 -0.04 0.15 16 11 C -0.12 0.58 7.52 30.93 0.23 0.81 16 12 C 0.16 -0.64 1.53 -0.48 0.00 -0.64 16 13 C -0.12 1.03 8.25 30.83 0.25 1.28 16 14 C 0.12 -0.67 8.72 82.26 0.72 0.05 16 15 N -1.03 0.34 4.23 -514.69 -2.18 -1.84 16 16 S 2.74 16.27 6.33 -56.49 -0.36 15.91 16 17 O -0.98 -11.42 17.64 -128.00 -2.26 -13.68 16 18 O -0.97 -9.39 16.11 -128.00 -2.06 -11.45 16 19 C -0.69 -3.15 5.89 21.22 0.12 -3.03 16 20 C -0.08 -0.24 10.70 66.72 0.71 0.48 16 21 S 0.13 0.44 20.58 -56.49 -1.16 -0.72 16 22 C -0.19 -0.71 5.76 24.59 0.14 -0.56 16 23 C -0.04 0.09 2.95 71.23 0.21 0.30 16 24 O -0.56 1.60 12.83 -148.98 -1.91 -0.31 16 25 Si 0.76 -2.67 30.97 68.60 2.12 -0.55 16 26 C -0.05 -0.22 9.56 21.22 0.20 -0.02 16 27 C -0.14 0.45 7.52 30.93 0.23 0.69 16 28 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.63 5.88 -2.39 -0.01 0.62 16 31 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.10 -0.46 8.14 -2.38 -0.02 -0.48 16 33 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 35 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 37 H 0.41 0.47 8.58 -92.71 -0.80 -0.32 16 38 H 0.08 -0.05 7.85 -2.39 -0.02 -0.07 16 39 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.10 0.31 6.60 -2.39 -0.02 0.29 16 41 H 0.13 -1.23 8.10 -2.39 -0.02 -1.25 16 42 H 0.08 -0.26 8.14 -2.39 -0.02 -0.27 16 43 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H 0.12 -1.45 8.14 -2.39 -0.02 -1.47 16 45 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 46 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 47 H 0.20 -0.29 8.00 -2.91 -0.02 -0.31 16 48 H 0.11 -0.63 7.96 -2.39 -0.02 -0.65 16 49 H 0.41 -5.39 8.74 -74.06 -0.65 -6.04 16 50 H -0.27 -0.43 7.11 99.48 0.71 0.28 16 51 H -0.27 -0.81 7.11 99.48 0.71 -0.10 16 52 H 0.16 0.51 7.71 -2.91 -0.02 0.49 16 53 H 0.06 -0.05 7.89 -2.39 -0.02 -0.07 16 54 H 0.12 -0.75 7.90 -2.39 -0.02 -0.77 16 Total: 0.00 -27.42 459.65 -5.73 -33.15 By element: Atomic # 1 Polarization: -11.06 SS G_CDS: -0.47 Total: -11.52 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.14 Total: 7.68 kcal Atomic # 7 Polarization: -2.11 SS G_CDS: -5.46 Total: -7.57 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -6.55 Total: -36.36 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.12 Total: -0.55 kcal Atomic # 16 Polarization: 16.70 SS G_CDS: -1.52 Total: 15.18 kcal Total: -27.42 -5.73 -33.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17310142_15065232.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.371 kcal (2) G-P(sol) polarization free energy of solvation -27.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds