Wall clock time and date at job start Mon Mar 8 2021 09:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99862 * 2 1 4 4 C 1.52999 * 112.85103 * 66.04915 * 3 2 1 5 5 F 1.39908 * 109.46769 * 283.58084 * 4 3 2 6 6 F 1.39901 * 109.47152 * 43.57481 * 4 3 2 7 7 F 1.39900 * 109.47305 * 163.58330 * 4 3 2 8 8 C 1.53779 * 113.61630 * 294.85098 * 3 2 1 9 9 C 1.53789 * 87.08167 * 270.80007 * 8 3 2 10 10 H 1.08995 * 113.61680 * 219.93139 * 9 8 3 11 11 N 1.46502 * 113.61075 * 89.11292 * 9 8 3 12 12 S 1.65602 * 119.99571 * 145.00485 * 11 9 8 13 13 O 1.42098 * 106.40124 * 178.26386 * 12 11 9 14 14 O 1.42096 * 106.40095 * 311.18145 * 12 11 9 15 15 C 1.76201 * 107.22073 * 64.72302 * 12 11 9 16 16 C 1.38238 * 119.99706 * 269.73072 * 15 12 11 17 17 C 1.38232 * 119.99501 * 179.79061 * 16 15 12 18 18 C 1.38240 * 120.00378 * 0.45544 * 17 16 15 19 19 C 1.50702 * 120.00186 * 179.79621 * 18 17 16 20 20 O 1.42903 * 109.46823 * 244.97825 * 19 18 17 21 21 Si 1.86300 * 109.47207 * 4.97513 * 19 18 17 22 22 C 1.38232 * 119.99838 * 359.77239 * 18 17 16 23 23 C 1.38235 * 119.99984 * 89.99665 * 15 12 11 24 24 C 1.53777 * 113.68845 * 197.31476 * 3 2 1 25 25 H 1.08994 * 109.46843 * 182.46296 * 1 2 3 26 26 H 1.08994 * 109.46806 * 302.46588 * 1 2 3 27 27 H 1.08999 * 109.47107 * 62.46540 * 1 2 3 28 28 H 1.08993 * 113.62029 * 156.25281 * 8 3 2 29 29 H 1.09005 * 113.61227 * 25.34507 * 8 3 2 30 30 H 0.96998 * 120.00488 * 324.72519 * 11 9 8 31 31 H 1.07998 * 120.00194 * 359.97438 * 16 15 12 32 32 H 1.08008 * 119.99982 * 180.24956 * 17 16 15 33 33 H 1.09001 * 109.47077 * 124.97942 * 19 18 17 34 34 H 0.96704 * 114.00224 * 59.99648 * 20 19 18 35 35 H 1.48493 * 109.99967 * 180.02562 * 21 19 18 36 36 H 1.48501 * 110.00246 * 301.32185 * 21 19 18 37 37 H 1.07995 * 120.00490 * 180.02562 * 22 18 17 38 38 H 1.07997 * 119.99896 * 359.97438 * 23 15 12 39 39 H 1.09004 * 113.61864 * 334.57473 * 24 3 2 40 40 H 1.09001 * 113.61376 * 203.68002 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7290 2.0811 1.2885 5 9 0.4121 2.5531 1.2706 6 9 1.9066 1.2363 2.3895 7 9 2.6109 3.1629 1.3836 8 6 1.7199 2.1091 -1.2785 9 6 2.9965 1.4849 -1.8666 10 1 3.5914 2.1819 -2.4568 11 7 2.7645 0.2118 -2.5533 12 16 3.6515 -0.1782 -3.8963 13 8 3.2244 -1.4728 -4.2972 14 8 3.6040 0.9555 -4.7516 15 6 5.3290 -0.3444 -3.3832 16 6 6.1703 0.7522 -3.4050 17 6 7.4851 0.6228 -2.9984 18 6 7.9612 -0.6054 -2.5790 19 6 9.3959 -0.7476 -2.1401 20 8 10.0871 -1.6118 -3.0442 21 14 10.2125 0.9269 -2.1349 22 6 7.1212 -1.7031 -2.5618 23 6 5.8051 -1.5727 -2.9643 24 6 3.4897 1.3231 -0.4191 25 1 -0.3633 -1.0267 0.0442 26 1 -0.3633 0.5516 0.8670 27 1 -0.3633 0.4751 -0.9113 28 1 1.7853 3.1883 -1.1403 29 1 0.8078 1.8013 -1.7900 30 1 2.0942 -0.4045 -2.2190 31 1 5.7995 1.7108 -3.7367 32 1 8.1414 1.4805 -3.0115 33 1 9.4285 -1.1709 -1.1362 34 1 10.0982 -1.2969 -3.9585 35 1 11.6280 0.8003 -1.7045 36 1 10.1464 1.5285 -3.4910 37 1 7.4929 -2.6625 -2.2338 38 1 5.1489 -2.4303 -2.9510 39 1 4.0066 0.3809 -0.2366 40 1 4.0390 2.1874 -0.0458 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17312456_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:06 Heat of formation + Delta-G solvation = -227.286719 kcal Electronic energy + Delta-G solvation = -32911.551576 eV Core-core repulsion = 27792.929189 eV Total energy + Delta-G solvation = -5118.622387 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.078 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -51.22599 -48.77412 -48.65539 -41.56710 -40.79556 -38.34499 -37.92815 -37.60916 -36.93483 -33.98668 -33.12449 -32.30826 -28.98686 -28.20363 -27.35229 -26.97453 -24.32538 -24.06026 -23.09315 -21.45532 -20.90493 -19.86491 -19.51394 -19.50493 -19.07195 -18.61794 -18.26120 -17.55448 -17.20770 -16.81970 -16.64835 -16.51203 -16.22623 -15.92880 -15.90303 -15.66747 -15.55741 -15.53010 -15.17156 -14.95652 -14.94997 -14.86217 -14.64649 -14.58520 -14.35737 -14.07059 -13.79590 -13.77817 -13.47464 -13.18774 -13.12826 -13.01758 -12.82354 -12.74704 -12.60016 -12.48861 -11.95566 -11.91310 -11.83226 -11.09235 -10.83838 -10.79873 -10.50503 -10.24024 -5.12572 -0.80732 -0.43998 0.09216 1.07960 1.44059 1.48612 1.69687 1.82199 1.95308 2.23321 2.46187 2.54595 2.66408 2.71584 3.07926 3.14763 3.23016 3.26313 3.36258 3.41450 3.62165 3.67647 3.81913 3.88359 4.05389 4.05807 4.09739 4.20271 4.22158 4.26804 4.30274 4.42317 4.49545 4.53898 4.60341 4.71235 4.81220 4.84823 4.88978 5.14785 5.54141 5.59211 5.76495 6.19605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.332 6.332 3 C 0.041 3.959 4 C 0.438 3.562 5 F -0.181 7.181 6 F -0.174 7.174 7 F -0.174 7.174 8 C -0.159 4.159 9 C 0.139 3.861 10 H 0.124 0.876 11 N -1.094 6.094 12 S 2.695 3.305 13 O -0.951 6.951 14 O -0.951 6.951 15 C -0.674 4.674 16 C -0.016 4.016 17 C -0.139 4.139 18 C -0.060 4.060 19 C -0.085 4.085 20 O -0.525 6.525 21 Si 0.689 3.311 22 C -0.113 4.113 23 C -0.015 4.015 24 C -0.136 4.136 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.425 0.575 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.378 0.622 35 H -0.254 1.254 36 H -0.257 1.257 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.104 0.896 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 2.764 2.569 3.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.250 6.250 3 C -0.002 4.002 4 C 0.383 3.617 5 F -0.162 7.162 6 F -0.155 7.155 7 F -0.156 7.156 8 C -0.198 4.198 9 C 0.030 3.970 10 H 0.142 0.858 11 N -0.854 5.854 12 S 2.785 3.215 13 O -0.941 6.941 14 O -0.940 6.940 15 C -0.761 4.761 16 C -0.035 4.035 17 C -0.158 4.158 18 C -0.061 4.061 19 C -0.194 4.194 20 O -0.331 6.331 21 Si 0.589 3.411 22 C -0.131 4.131 23 C -0.034 4.034 24 C -0.175 4.175 25 H 0.122 0.878 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.138 0.862 29 H 0.120 0.880 30 H 0.262 0.738 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.226 0.774 35 H -0.179 1.179 36 H -0.182 1.182 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.123 0.877 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.522 2.757 1.890 3.383 hybrid contribution 0.013 -0.677 0.084 0.682 sum 0.535 2.080 1.974 2.917 Atomic orbital electron populations 1.23199 0.79325 1.04614 1.01727 1.88068 1.21215 1.21842 1.93861 1.23950 0.99822 0.86431 0.89986 1.21146 0.74343 0.78693 0.87520 1.93195 1.36880 1.89328 1.96830 1.93226 1.94921 1.70610 1.56750 1.93181 1.68845 1.56967 1.96575 1.23995 1.00582 1.01537 0.93711 1.21434 0.97358 0.85149 0.93050 0.85819 1.55435 1.53179 1.27469 1.49288 1.01950 0.73310 0.73630 0.72659 1.93631 1.80861 1.39881 1.79758 1.93620 1.86304 1.52043 1.62067 1.30965 1.25479 1.00832 1.18830 1.20898 0.93034 0.97429 0.92160 1.21209 0.96436 0.97203 1.00929 1.20685 0.96377 0.93837 0.95184 1.25205 0.90400 1.07117 0.96697 1.86639 1.76231 1.48196 1.22075 0.94957 0.82324 0.77518 0.86252 1.21202 0.93061 0.99058 0.99820 1.21003 0.96178 0.95454 0.90771 1.23794 0.91532 1.06397 0.95757 0.87813 0.92627 0.92493 0.86238 0.87989 0.73775 0.83714 0.84492 0.85780 0.77393 1.17854 1.18218 0.84522 0.83872 0.87732 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.43 101.05 1.05 1.04 16 2 O -0.33 0.49 8.91 -35.23 -0.31 0.18 16 3 C 0.04 -0.09 0.85 -89.81 -0.08 -0.17 16 4 C 0.44 -0.22 2.51 37.16 0.09 -0.12 16 5 F -0.18 -0.02 15.24 2.25 0.03 0.01 16 6 F -0.17 -0.25 17.09 2.25 0.04 -0.21 16 7 F -0.17 0.12 15.82 2.25 0.04 0.16 16 8 C -0.16 0.60 6.71 -25.92 -0.17 0.43 16 9 C 0.14 -0.53 4.51 -67.11 -0.30 -0.83 16 10 H 0.12 -0.67 7.78 -51.93 -0.40 -1.07 16 11 N -1.09 2.77 5.68 -4.19 -0.02 2.74 16 12 S 2.70 0.20 5.71 -107.50 -0.61 -0.41 16 13 O -0.95 -3.12 17.28 -57.17 -0.99 -4.11 16 14 O -0.95 -2.39 16.81 -57.17 -0.96 -3.35 16 15 C -0.67 0.50 5.94 -39.58 -0.24 0.26 16 16 C -0.02 0.03 9.52 -39.58 -0.38 -0.35 16 17 C -0.14 0.28 8.67 -39.58 -0.34 -0.06 16 18 C -0.06 0.09 5.35 -104.62 -0.56 -0.47 16 19 C -0.08 0.15 2.80 36.01 0.10 0.25 16 20 O -0.53 -0.02 12.83 -35.23 -0.45 -0.47 16 21 Si 0.69 -1.65 29.88 -169.99 -5.08 -6.73 16 22 C -0.11 0.10 9.69 -39.58 -0.38 -0.29 16 23 C -0.01 0.01 9.52 -39.58 -0.38 -0.37 16 24 C -0.14 0.53 7.13 -25.92 -0.18 0.34 16 25 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 26 H 0.06 -0.11 6.25 -51.93 -0.32 -0.43 16 27 H 0.06 -0.22 6.75 -51.93 -0.35 -0.57 16 28 H 0.12 -0.60 8.06 -51.93 -0.42 -1.02 16 29 H 0.10 -0.41 6.74 -51.93 -0.35 -0.76 16 30 H 0.43 -1.28 7.53 -34.47 -0.26 -1.53 16 31 H 0.15 -0.50 7.61 -52.49 -0.40 -0.90 16 32 H 0.14 -0.53 4.85 -52.48 -0.25 -0.79 16 33 H 0.12 -0.33 7.96 -51.93 -0.41 -0.74 16 34 H 0.38 -1.00 8.70 45.56 0.40 -0.61 16 35 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 36 H -0.26 0.13 7.01 56.52 0.40 0.53 16 37 H 0.14 -0.22 8.06 -52.49 -0.42 -0.65 16 38 H 0.14 -0.21 7.62 -52.49 -0.40 -0.61 16 39 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 40 H 0.13 -0.68 7.01 -51.93 -0.36 -1.04 16 LS Contribution 354.20 15.07 5.34 5.34 Total: 0.00 -10.15 354.20 -8.76 -18.91 By element: Atomic # 1 Polarization: -7.70 SS G_CDS: -4.01 Total: -11.71 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.76 Total: -0.34 kcal Atomic # 7 Polarization: 2.77 SS G_CDS: -0.02 Total: 2.74 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -2.72 Total: -7.76 kcal Atomic # 9 Polarization: -0.15 SS G_CDS: 0.11 Total: -0.04 kcal Atomic # 14 Polarization: -1.65 SS G_CDS: -5.08 Total: -6.73 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -0.61 Total: -0.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -10.15 -8.76 -18.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312456_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.373 kcal (2) G-P(sol) polarization free energy of solvation -10.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds