Wall clock time and date at job start Mon Mar 8 2021 09:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 113.99862 * 2 1 4 4 C 1.52999 * 112.85103 * 66.04915 * 3 2 1 5 5 F 1.39908 * 109.46769 * 283.58084 * 4 3 2 6 6 F 1.39901 * 109.47152 * 43.57481 * 4 3 2 7 7 F 1.39900 * 109.47305 * 163.58330 * 4 3 2 8 8 C 1.53779 * 113.61630 * 294.85098 * 3 2 1 9 9 C 1.53789 * 87.08167 * 270.80007 * 8 3 2 10 10 H 1.08995 * 113.61680 * 219.93139 * 9 8 3 11 11 N 1.46502 * 113.61075 * 89.11292 * 9 8 3 12 12 S 1.65602 * 119.99571 * 145.00485 * 11 9 8 13 13 O 1.42098 * 106.40124 * 178.26386 * 12 11 9 14 14 O 1.42096 * 106.40095 * 311.18145 * 12 11 9 15 15 C 1.76201 * 107.22073 * 64.72302 * 12 11 9 16 16 C 1.38238 * 119.99706 * 269.73072 * 15 12 11 17 17 C 1.38232 * 119.99501 * 179.79061 * 16 15 12 18 18 C 1.38240 * 120.00378 * 0.45544 * 17 16 15 19 19 C 1.50702 * 120.00186 * 179.79621 * 18 17 16 20 20 O 1.42903 * 109.46823 * 244.97825 * 19 18 17 21 21 Si 1.86300 * 109.47207 * 4.97513 * 19 18 17 22 22 C 1.38232 * 119.99838 * 359.77239 * 18 17 16 23 23 C 1.38235 * 119.99984 * 89.99665 * 15 12 11 24 24 C 1.53777 * 113.68845 * 197.31476 * 3 2 1 25 25 H 1.08994 * 109.46843 * 182.46296 * 1 2 3 26 26 H 1.08994 * 109.46806 * 302.46588 * 1 2 3 27 27 H 1.08999 * 109.47107 * 62.46540 * 1 2 3 28 28 H 1.08993 * 113.62029 * 156.25281 * 8 3 2 29 29 H 1.09005 * 113.61227 * 25.34507 * 8 3 2 30 30 H 0.96998 * 120.00488 * 324.72519 * 11 9 8 31 31 H 1.07998 * 120.00194 * 359.97438 * 16 15 12 32 32 H 1.08008 * 119.99982 * 180.24956 * 17 16 15 33 33 H 1.09001 * 109.47077 * 124.97942 * 19 18 17 34 34 H 0.96704 * 114.00224 * 59.99648 * 20 19 18 35 35 H 1.48493 * 109.99967 * 180.02562 * 21 19 18 36 36 H 1.48501 * 110.00246 * 301.32185 * 21 19 18 37 37 H 1.07995 * 120.00490 * 180.02562 * 22 18 17 38 38 H 1.07997 * 119.99896 * 359.97438 * 23 15 12 39 39 H 1.09004 * 113.61864 * 334.57473 * 24 3 2 40 40 H 1.09001 * 113.61376 * 203.68002 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7290 2.0811 1.2885 5 9 0.4121 2.5531 1.2706 6 9 1.9066 1.2363 2.3895 7 9 2.6109 3.1629 1.3836 8 6 1.7199 2.1091 -1.2785 9 6 2.9965 1.4849 -1.8666 10 1 3.5914 2.1819 -2.4568 11 7 2.7645 0.2118 -2.5533 12 16 3.6515 -0.1782 -3.8963 13 8 3.2244 -1.4728 -4.2972 14 8 3.6040 0.9555 -4.7516 15 6 5.3290 -0.3444 -3.3832 16 6 6.1703 0.7522 -3.4050 17 6 7.4851 0.6228 -2.9984 18 6 7.9612 -0.6054 -2.5790 19 6 9.3959 -0.7476 -2.1401 20 8 10.0871 -1.6118 -3.0442 21 14 10.2125 0.9269 -2.1349 22 6 7.1212 -1.7031 -2.5618 23 6 5.8051 -1.5727 -2.9643 24 6 3.4897 1.3231 -0.4191 25 1 -0.3633 -1.0267 0.0442 26 1 -0.3633 0.5516 0.8670 27 1 -0.3633 0.4751 -0.9113 28 1 1.7853 3.1883 -1.1403 29 1 0.8078 1.8013 -1.7900 30 1 2.0942 -0.4045 -2.2190 31 1 5.7995 1.7108 -3.7367 32 1 8.1414 1.4805 -3.0115 33 1 9.4285 -1.1709 -1.1362 34 1 10.0982 -1.2969 -3.9585 35 1 11.6280 0.8003 -1.7045 36 1 10.1464 1.5285 -3.4910 37 1 7.4929 -2.6625 -2.2338 38 1 5.1489 -2.4303 -2.9510 39 1 4.0066 0.3809 -0.2366 40 1 4.0390 2.1874 -0.0458 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17312456_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:06 Heat of formation + Delta-G solvation = -230.756427 kcal Electronic energy + Delta-G solvation = -32911.702034 eV Core-core repulsion = 27792.929189 eV Total energy + Delta-G solvation = -5118.772845 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.078 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.18437 -48.71648 -48.65851 -41.31559 -40.66407 -38.43587 -37.84560 -37.40373 -37.04064 -33.80212 -33.01697 -32.16943 -28.80051 -27.99235 -27.23283 -26.68214 -24.17032 -23.89746 -22.98252 -21.26041 -20.79407 -19.76814 -19.47235 -19.41749 -18.96623 -18.54576 -18.22233 -17.37555 -17.04735 -16.67400 -16.51014 -16.34493 -16.09714 -15.80894 -15.74412 -15.59599 -15.52229 -15.49060 -15.11975 -14.92436 -14.84078 -14.81363 -14.53852 -14.47211 -14.15007 -13.96629 -13.72575 -13.61091 -13.31490 -13.24109 -13.16151 -12.89634 -12.67512 -12.59015 -12.52894 -12.24089 -11.88696 -11.73321 -11.67430 -10.90392 -10.72218 -10.59016 -10.37931 -10.10906 -4.95200 -0.76093 -0.35624 0.22771 1.24295 1.57883 1.60660 1.82757 1.95188 2.17448 2.34274 2.63527 2.67953 2.73163 2.93302 3.18633 3.32476 3.37309 3.45667 3.51712 3.58853 3.77686 3.85947 4.11252 4.17276 4.22796 4.31515 4.33014 4.38844 4.46210 4.52515 4.58840 4.64553 4.73324 4.83822 4.87548 4.92391 4.97440 5.01826 5.12550 5.28206 5.73069 5.77250 5.97509 6.39674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.344 6.344 3 C 0.034 3.966 4 C 0.433 3.567 5 F -0.187 7.187 6 F -0.189 7.189 7 F -0.173 7.173 8 C -0.156 4.156 9 C 0.133 3.867 10 H 0.145 0.855 11 N -1.087 6.087 12 S 2.713 3.287 13 O -0.989 6.989 14 O -0.976 6.976 15 C -0.676 4.676 16 C -0.019 4.019 17 C -0.139 4.139 18 C -0.061 4.061 19 C -0.093 4.093 20 O -0.546 6.546 21 Si 0.774 3.226 22 C -0.122 4.122 23 C -0.026 4.026 24 C -0.131 4.131 25 H 0.111 0.889 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.135 0.865 29 H 0.104 0.896 30 H 0.428 0.572 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.133 0.867 34 H 0.388 0.612 35 H -0.305 1.305 36 H -0.278 1.278 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.103 0.897 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 3.840 2.580 4.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.261 6.261 3 C -0.009 4.009 4 C 0.378 3.622 5 F -0.169 7.169 6 F -0.170 7.170 7 F -0.154 7.154 8 C -0.195 4.195 9 C 0.025 3.975 10 H 0.162 0.838 11 N -0.848 5.848 12 S 2.804 3.196 13 O -0.979 6.979 14 O -0.966 6.966 15 C -0.764 4.764 16 C -0.038 4.038 17 C -0.158 4.158 18 C -0.061 4.061 19 C -0.202 4.202 20 O -0.354 6.354 21 Si 0.679 3.321 22 C -0.141 4.141 23 C -0.046 4.046 24 C -0.170 4.170 25 H 0.129 0.871 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.122 0.878 30 H 0.266 0.734 31 H 0.182 0.818 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.237 0.763 35 H -0.233 1.233 36 H -0.204 1.204 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.121 0.879 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.732 3.827 1.894 4.332 hybrid contribution -0.021 -1.007 0.136 1.016 sum 0.710 2.820 2.030 3.547 Atomic orbital electron populations 1.23298 0.78993 1.05172 1.01896 1.88053 1.21727 1.22517 1.93840 1.24183 1.01026 0.86214 0.89432 1.21523 0.74084 0.78742 0.87820 1.93179 1.37399 1.89422 1.96853 1.93190 1.94992 1.71109 1.57749 1.93175 1.68732 1.56943 1.96600 1.24081 1.00690 1.02250 0.92501 1.21659 0.97809 0.84693 0.93339 0.83791 1.55200 1.52775 1.28158 1.48652 1.01125 0.73417 0.72303 0.72721 1.93576 1.81762 1.41615 1.80975 1.93582 1.86854 1.52614 1.63538 1.30791 1.24907 1.01279 1.19439 1.21193 0.93061 0.97910 0.91613 1.21435 0.96594 0.97544 1.00188 1.20750 0.96321 0.94000 0.95060 1.25435 0.90251 1.07605 0.96865 1.86609 1.76530 1.49241 1.23054 0.94032 0.78689 0.75753 0.83667 1.21307 0.93094 0.99570 1.00140 1.21103 0.96498 0.95742 0.91230 1.23894 0.90628 1.07140 0.95367 0.87065 0.93597 0.91270 0.84700 0.87757 0.73446 0.81777 0.82533 0.84972 0.76303 1.23339 1.20401 0.84268 0.83775 0.87877 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 2 O -0.34 0.96 8.91 -148.98 -1.33 -0.37 16 3 C 0.03 -0.17 0.85 -10.27 -0.01 -0.18 16 4 C 0.43 -0.43 2.51 71.98 0.18 -0.25 16 5 F -0.19 -0.10 15.24 44.97 0.69 0.59 16 6 F -0.19 -0.65 17.09 44.97 0.77 0.12 16 7 F -0.17 0.34 15.82 44.97 0.71 1.05 16 8 C -0.16 1.34 6.71 31.12 0.21 1.55 16 9 C 0.13 -1.16 4.51 45.52 0.21 -0.96 16 10 H 0.14 -1.84 7.78 -2.39 -0.02 -1.85 16 11 N -1.09 5.75 5.68 -167.18 -0.95 4.80 16 12 S 2.71 0.99 5.71 -56.49 -0.32 0.67 16 13 O -0.99 -7.56 17.28 -128.00 -2.21 -9.78 16 14 O -0.98 -4.74 16.81 -128.00 -2.15 -6.89 16 15 C -0.68 1.16 5.94 22.27 0.13 1.30 16 16 C -0.02 0.09 9.52 22.27 0.21 0.30 16 17 C -0.14 0.76 8.67 22.27 0.19 0.96 16 18 C -0.06 0.22 5.35 -19.86 -0.11 0.11 16 19 C -0.09 0.38 2.80 71.24 0.20 0.58 16 20 O -0.55 -0.01 12.83 -148.98 -1.91 -1.93 16 21 Si 0.77 -4.20 29.88 68.60 2.05 -2.15 16 22 C -0.12 0.21 9.69 22.27 0.22 0.42 16 23 C -0.03 0.02 9.52 22.27 0.21 0.24 16 24 C -0.13 1.16 7.13 31.12 0.22 1.38 16 25 H 0.11 -0.79 8.14 -2.39 -0.02 -0.81 16 26 H 0.05 -0.14 6.25 -2.39 -0.01 -0.15 16 27 H 0.07 -0.54 6.75 -2.39 -0.02 -0.56 16 28 H 0.13 -1.57 8.06 -2.39 -0.02 -1.59 16 29 H 0.10 -0.93 6.74 -2.38 -0.02 -0.94 16 30 H 0.43 -2.49 7.53 -96.75 -0.73 -3.22 16 31 H 0.16 -1.45 7.61 -2.91 -0.02 -1.48 16 32 H 0.16 -1.55 4.85 -2.91 -0.01 -1.56 16 33 H 0.13 -0.78 7.96 -2.39 -0.02 -0.80 16 34 H 0.39 -2.06 8.70 -74.05 -0.64 -2.71 16 35 H -0.31 -0.99 7.11 99.48 0.71 -0.28 16 36 H -0.28 0.58 7.01 99.48 0.70 1.27 16 37 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16 38 H 0.14 -0.27 7.62 -2.91 -0.02 -0.29 16 39 H 0.10 -0.84 8.14 -2.38 -0.02 -0.86 16 40 H 0.14 -1.78 7.01 -2.39 -0.02 -1.80 16 Total: 0.00 -23.50 354.20 -1.82 -25.32 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: -0.21 Total: -18.05 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 3.05 Total: 6.62 kcal Atomic # 7 Polarization: 5.75 SS G_CDS: -0.95 Total: 4.80 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -7.60 Total: -18.96 kcal Atomic # 9 Polarization: -0.41 SS G_CDS: 2.17 Total: 1.75 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.05 Total: -2.15 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -0.32 Total: 0.67 kcal Total: -23.50 -1.82 -25.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312456_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -205.434 kcal (2) G-P(sol) polarization free energy of solvation -23.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds