Wall clock time and date at job start Mon Mar 8 2021 09:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00301 * 2 1 4 4 C 1.53001 * 112.90316 * 291.15308 * 3 2 1 5 5 F 1.39904 * 109.46859 * 195.27391 * 4 3 2 6 6 F 1.39906 * 109.46894 * 315.26779 * 4 3 2 7 7 F 1.39896 * 109.47155 * 75.27107 * 4 3 2 8 8 C 1.53785 * 113.61543 * 159.90297 * 3 2 1 9 9 C 1.53787 * 87.07622 * 270.88204 * 8 3 2 10 10 H 1.09003 * 113.68457 * 220.00659 * 9 8 3 11 11 N 1.46495 * 113.61763 * 89.11954 * 9 8 3 12 12 S 1.65601 * 120.00147 * 117.13807 * 11 9 8 13 13 O 1.42103 * 106.40287 * 312.93590 * 12 11 9 14 14 O 1.42108 * 106.40008 * 180.02562 * 12 11 9 15 15 C 1.76195 * 107.21844 * 66.47736 * 12 11 9 16 16 C 1.33393 * 122.53808 * 66.72004 * 15 12 11 17 17 C 1.50702 * 125.20354 * 359.97438 * 16 15 12 18 18 O 1.42895 * 109.47276 * 319.18774 * 17 16 15 19 19 Si 1.86299 * 109.47067 * 199.18531 * 17 16 15 20 20 S 1.75880 * 109.59269 * 179.97438 * 16 15 12 21 21 C 1.75882 * 90.97218 * 359.97438 * 20 16 15 22 22 C 1.33385 * 109.59359 * 0.02562 * 21 20 16 23 23 C 1.53779 * 87.08474 * 334.56746 * 9 8 3 24 24 H 1.08998 * 109.47341 * 303.42152 * 1 2 3 25 25 H 1.09006 * 109.46457 * 63.41535 * 1 2 3 26 26 H 1.08995 * 109.47506 * 183.41284 * 1 2 3 27 27 H 1.08996 * 113.61071 * 156.33631 * 8 3 2 28 28 H 1.09001 * 113.61224 * 25.42505 * 8 3 2 29 29 H 0.97005 * 119.99586 * 297.14333 * 11 9 8 30 30 H 1.09007 * 109.46539 * 79.18569 * 17 16 15 31 31 H 0.96693 * 114.00463 * 302.75558 * 18 17 16 32 32 H 1.48501 * 109.99951 * 180.02562 * 19 17 16 33 33 H 1.48498 * 110.00115 * 301.32093 * 19 17 16 34 34 H 1.07996 * 125.20394 * 180.02562 * 21 20 16 35 35 H 1.08005 * 122.54527 * 179.97438 * 22 21 20 36 36 H 1.08999 * 113.61618 * 139.98262 * 23 9 8 37 37 H 1.08997 * 113.61568 * 270.80743 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7879 2.0563 -1.3144 5 9 2.6563 3.1514 -1.3786 6 9 2.0397 1.1979 -2.3901 7 9 0.4647 2.5060 -1.3764 8 6 3.4698 1.3299 0.4842 9 6 2.9126 1.5199 1.9049 10 1 3.4819 2.2277 2.5075 11 7 2.6482 0.2605 2.6049 12 16 3.4803 -0.1083 3.9884 13 8 4.8498 0.1543 3.7151 14 8 3.0028 -1.3760 4.4180 15 6 2.9870 1.0524 5.2188 16 6 1.7504 1.0870 5.7178 17 6 0.6255 0.1681 5.3163 18 8 0.6514 -0.0264 3.9009 19 14 -1.0027 0.9275 5.8091 20 16 1.6336 2.3692 6.9160 21 6 3.3207 2.7984 6.6651 22 6 3.8535 1.9968 5.7416 23 6 1.6646 2.1337 1.2487 24 1 -0.3634 0.5660 0.8577 25 1 -0.3632 0.4599 -0.9191 26 1 -0.3634 -1.0258 0.0612 27 1 4.0364 2.1865 0.1193 28 1 3.9925 0.3839 0.3431 29 1 1.9858 -0.3574 2.2580 30 1 0.7448 -0.7926 5.8173 31 1 0.5927 0.7926 3.3902 32 1 -2.1202 0.0306 5.4192 33 1 -1.0299 1.1642 7.2749 34 1 3.8450 3.5898 7.1800 35 1 4.8831 2.0785 5.4255 36 1 0.7301 1.8367 1.7248 37 1 1.7373 3.2102 1.0940 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17312456_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:10 Heat of formation + Delta-G solvation = -207.973831 kcal Electronic energy + Delta-G solvation = -32745.353797 eV Core-core repulsion = 27716.721126 eV Total energy + Delta-G solvation = -5028.632671 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.035 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -51.16746 -48.72096 -48.59759 -41.57185 -39.82870 -38.32261 -37.75976 -37.30189 -36.72710 -33.83192 -31.94636 -28.96778 -28.17322 -27.64266 -26.90330 -24.60349 -24.03306 -21.88660 -21.35049 -20.35465 -19.73172 -19.52865 -19.39009 -19.19839 -18.58161 -18.12233 -17.36407 -17.05211 -17.04085 -16.59272 -16.39414 -15.89372 -15.83020 -15.57998 -15.53945 -15.49410 -15.20851 -15.10171 -14.88263 -14.80774 -14.60604 -14.41526 -14.31056 -14.18047 -13.96659 -13.67115 -13.40260 -13.07262 -12.96300 -12.92944 -12.86101 -12.79395 -12.73821 -12.41182 -12.21975 -11.88560 -11.67691 -11.14594 -11.00190 -10.60495 -10.28571 -9.88309 -5.37121 -0.72659 -0.55273 0.21922 0.51890 0.90987 1.03320 1.34355 1.53828 1.69090 1.90839 2.07254 2.50536 2.59896 2.69499 2.78165 2.95401 3.14231 3.22883 3.32522 3.44896 3.51392 3.82039 3.83763 4.00124 4.06550 4.10399 4.17202 4.25735 4.26919 4.31806 4.39682 4.59671 4.62544 4.72158 4.80559 4.93389 5.03141 5.61457 5.93766 6.08557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.329 6.329 3 C 0.041 3.959 4 C 0.438 3.562 5 F -0.175 7.175 6 F -0.174 7.174 7 F -0.182 7.182 8 C -0.131 4.131 9 C 0.139 3.861 10 H 0.120 0.880 11 N -1.086 6.086 12 S 2.718 3.282 13 O -0.956 6.956 14 O -0.942 6.942 15 C -0.667 4.667 16 C -0.102 4.102 17 C -0.060 4.060 18 O -0.530 6.530 19 Si 0.668 3.332 20 S 0.158 5.842 21 C -0.210 4.210 22 C -0.077 4.077 23 C -0.166 4.166 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.106 0.894 29 H 0.431 0.569 30 H 0.149 0.851 31 H 0.377 0.623 32 H -0.226 1.226 33 H -0.233 1.233 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.098 0.902 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.652 5.982 1.389 7.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.247 6.247 3 C -0.001 4.001 4 C 0.383 3.617 5 F -0.156 7.156 6 F -0.155 7.155 7 F -0.163 7.163 8 C -0.170 4.170 9 C 0.030 3.970 10 H 0.138 0.862 11 N -0.849 5.849 12 S 2.803 3.197 13 O -0.946 6.946 14 O -0.932 6.932 15 C -0.766 4.766 16 C -0.223 4.223 17 C -0.172 4.172 18 O -0.338 6.338 19 Si 0.566 3.434 20 S 0.421 5.579 21 C -0.346 4.346 22 C -0.105 4.105 23 C -0.205 4.205 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.125 0.875 29 H 0.271 0.729 30 H 0.166 0.834 31 H 0.227 0.773 32 H -0.149 1.149 33 H -0.157 1.157 34 H 0.193 0.807 35 H 0.177 0.823 36 H 0.117 0.883 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.675 5.145 3.180 7.644 hybrid contribution 0.731 -0.104 -0.912 1.173 sum -3.944 5.041 2.269 6.790 Atomic orbital electron populations 1.23187 0.79440 1.04592 1.01519 1.88120 1.21103 1.21671 1.93770 1.23936 1.00308 0.86538 0.89345 1.21162 0.74047 0.78357 0.88132 1.93183 1.69772 1.55956 1.96725 1.93228 1.93786 1.69813 1.58659 1.93189 1.36237 1.90000 1.96917 1.23720 0.91690 1.06546 0.95061 1.21403 0.96164 0.85718 0.93677 0.86246 1.55660 1.58568 1.29140 1.41527 1.01453 0.72906 0.73022 0.72314 1.93601 1.31281 1.85591 1.84078 1.93610 1.81240 1.37367 1.80976 1.30016 1.00879 1.21229 1.24511 1.25079 0.97762 0.99677 0.99796 1.25074 1.03723 1.02435 0.85985 1.86631 1.96086 1.36355 1.14687 0.94986 0.76317 0.88073 0.84054 1.84538 1.10055 1.25525 1.37763 1.25925 0.97692 1.06272 1.04732 1.19790 1.00916 0.93307 0.96446 1.24111 1.00371 1.01613 0.94375 0.92488 0.92815 0.87829 0.85765 0.87546 0.72870 0.83412 0.77250 1.14864 1.15722 0.80667 0.82270 0.88340 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 10.39 101.05 1.05 1.02 16 2 O -0.33 0.41 8.93 -35.23 -0.31 0.09 16 3 C 0.04 -0.09 0.84 -89.80 -0.08 -0.17 16 4 C 0.44 -0.15 2.60 37.16 0.10 -0.06 16 5 F -0.17 0.06 15.80 2.25 0.04 0.10 16 6 F -0.17 -0.34 17.12 2.25 0.04 -0.30 16 7 F -0.18 0.04 15.39 2.25 0.03 0.07 16 8 C -0.13 0.34 7.14 -25.91 -0.18 0.16 16 9 C 0.14 -0.53 4.41 -67.12 -0.30 -0.83 16 10 H 0.12 -0.64 8.05 -51.93 -0.42 -1.06 16 11 N -1.09 2.22 3.40 -4.20 -0.01 2.21 16 12 S 2.72 3.41 4.87 -107.50 -0.52 2.89 16 13 O -0.96 -3.63 17.07 -57.17 -0.98 -4.61 16 14 O -0.94 -4.38 16.61 -63.75 -1.06 -5.44 16 15 C -0.67 0.17 5.79 -41.21 -0.24 -0.07 16 16 C -0.10 0.12 5.72 -36.00 -0.21 -0.09 16 17 C -0.06 0.10 2.18 36.01 0.08 0.18 16 18 O -0.53 1.43 8.26 -49.42 -0.41 1.02 16 19 Si 0.67 -2.01 31.20 -169.99 -5.30 -7.31 16 20 S 0.16 -0.30 20.82 -107.50 -2.24 -2.54 16 21 C -0.21 0.40 11.23 29.04 0.33 0.72 16 22 C -0.08 0.06 9.70 -41.21 -0.40 -0.34 16 23 C -0.17 0.86 6.58 -25.92 -0.17 0.68 16 24 H 0.06 -0.30 6.43 -51.93 -0.33 -0.63 16 25 H 0.05 -0.12 6.61 -51.93 -0.34 -0.46 16 26 H 0.10 -0.38 8.14 -51.93 -0.42 -0.80 16 27 H 0.12 -0.48 7.03 -51.93 -0.37 -0.85 16 28 H 0.11 -0.16 8.14 -51.93 -0.42 -0.58 16 29 H 0.43 -0.98 6.17 -34.48 -0.21 -1.19 16 30 H 0.15 -0.10 7.96 -51.92 -0.41 -0.51 16 31 H 0.38 -2.36 6.02 45.56 0.27 -2.09 16 32 H -0.23 0.11 7.11 56.52 0.40 0.51 16 33 H -0.23 0.23 7.11 56.52 0.40 0.63 16 34 H 0.18 -0.70 8.06 -52.49 -0.42 -1.12 16 35 H 0.16 -0.23 7.74 -52.48 -0.41 -0.63 16 36 H 0.10 -0.70 4.95 -51.93 -0.26 -0.96 16 37 H 0.12 -0.78 8.03 -51.93 -0.42 -1.19 16 LS Contribution 333.58 15.07 5.03 5.03 Total: 0.00 -9.43 333.58 -9.08 -18.51 By element: Atomic # 1 Polarization: -7.58 SS G_CDS: -3.36 Total: -10.93 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.02 Total: 1.22 kcal Atomic # 7 Polarization: 2.22 SS G_CDS: -0.01 Total: 2.21 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -2.76 Total: -8.93 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.11 Total: -0.13 kcal Atomic # 14 Polarization: -2.01 SS G_CDS: -5.30 Total: -7.31 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.76 Total: 0.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -9.43 -9.08 -18.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312456_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.467 kcal (2) G-P(sol) polarization free energy of solvation -9.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds