Wall clock time and date at job start Mon Mar 8 2021 09:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 114.00301 * 2 1 4 4 C 1.53001 * 112.90316 * 291.15308 * 3 2 1 5 5 F 1.39904 * 109.46859 * 195.27391 * 4 3 2 6 6 F 1.39906 * 109.46894 * 315.26779 * 4 3 2 7 7 F 1.39896 * 109.47155 * 75.27107 * 4 3 2 8 8 C 1.53785 * 113.61543 * 159.90297 * 3 2 1 9 9 C 1.53787 * 87.07622 * 270.88204 * 8 3 2 10 10 H 1.09003 * 113.68457 * 220.00659 * 9 8 3 11 11 N 1.46495 * 113.61763 * 89.11954 * 9 8 3 12 12 S 1.65601 * 120.00147 * 117.13807 * 11 9 8 13 13 O 1.42103 * 106.40287 * 312.93590 * 12 11 9 14 14 O 1.42108 * 106.40008 * 180.02562 * 12 11 9 15 15 C 1.76195 * 107.21844 * 66.47736 * 12 11 9 16 16 C 1.33393 * 122.53808 * 66.72004 * 15 12 11 17 17 C 1.50702 * 125.20354 * 359.97438 * 16 15 12 18 18 O 1.42895 * 109.47276 * 319.18774 * 17 16 15 19 19 Si 1.86299 * 109.47067 * 199.18531 * 17 16 15 20 20 S 1.75880 * 109.59269 * 179.97438 * 16 15 12 21 21 C 1.75882 * 90.97218 * 359.97438 * 20 16 15 22 22 C 1.33385 * 109.59359 * 0.02562 * 21 20 16 23 23 C 1.53779 * 87.08474 * 334.56746 * 9 8 3 24 24 H 1.08998 * 109.47341 * 303.42152 * 1 2 3 25 25 H 1.09006 * 109.46457 * 63.41535 * 1 2 3 26 26 H 1.08995 * 109.47506 * 183.41284 * 1 2 3 27 27 H 1.08996 * 113.61071 * 156.33631 * 8 3 2 28 28 H 1.09001 * 113.61224 * 25.42505 * 8 3 2 29 29 H 0.97005 * 119.99586 * 297.14333 * 11 9 8 30 30 H 1.09007 * 109.46539 * 79.18569 * 17 16 15 31 31 H 0.96693 * 114.00463 * 302.75558 * 18 17 16 32 32 H 1.48501 * 109.99951 * 180.02562 * 19 17 16 33 33 H 1.48498 * 110.00115 * 301.32093 * 19 17 16 34 34 H 1.07996 * 125.20394 * 180.02562 * 21 20 16 35 35 H 1.08005 * 122.54527 * 179.97438 * 22 21 20 36 36 H 1.08999 * 113.61618 * 139.98262 * 23 9 8 37 37 H 1.08997 * 113.61568 * 270.80743 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7879 2.0563 -1.3144 5 9 2.6563 3.1514 -1.3786 6 9 2.0397 1.1979 -2.3901 7 9 0.4647 2.5060 -1.3764 8 6 3.4698 1.3299 0.4842 9 6 2.9126 1.5199 1.9049 10 1 3.4819 2.2277 2.5075 11 7 2.6482 0.2605 2.6049 12 16 3.4803 -0.1083 3.9884 13 8 4.8498 0.1543 3.7151 14 8 3.0028 -1.3760 4.4180 15 6 2.9870 1.0524 5.2188 16 6 1.7504 1.0870 5.7178 17 6 0.6255 0.1681 5.3163 18 8 0.6514 -0.0264 3.9009 19 14 -1.0027 0.9275 5.8091 20 16 1.6336 2.3692 6.9160 21 6 3.3207 2.7984 6.6651 22 6 3.8535 1.9968 5.7416 23 6 1.6646 2.1337 1.2487 24 1 -0.3634 0.5660 0.8577 25 1 -0.3632 0.4599 -0.9191 26 1 -0.3634 -1.0258 0.0612 27 1 4.0364 2.1865 0.1193 28 1 3.9925 0.3839 0.3431 29 1 1.9858 -0.3574 2.2580 30 1 0.7448 -0.7926 5.8173 31 1 0.5927 0.7926 3.3902 32 1 -2.1202 0.0306 5.4192 33 1 -1.0299 1.1642 7.2749 34 1 3.8450 3.5898 7.1800 35 1 4.8831 2.0785 5.4255 36 1 0.7301 1.8367 1.7248 37 1 1.7373 3.2102 1.0940 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17312456_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:10 Heat of formation + Delta-G solvation = -209.794489 kcal Electronic energy + Delta-G solvation = -32745.432747 eV Core-core repulsion = 27716.721126 eV Total energy + Delta-G solvation = -5028.711621 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.035 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.14166 -48.67270 -48.62576 -41.33257 -39.69291 -38.41842 -37.61476 -37.16157 -36.92191 -33.68652 -31.79928 -28.77114 -27.96506 -27.51755 -26.61625 -24.47064 -23.88053 -21.81763 -21.16403 -20.25912 -19.66678 -19.46376 -19.30275 -19.12409 -18.52118 -18.05469 -17.19453 -16.91614 -16.88862 -16.40792 -16.24799 -15.86469 -15.67416 -15.54624 -15.46695 -15.38207 -15.13720 -15.07002 -14.87779 -14.80178 -14.48058 -14.28968 -14.10687 -14.03705 -13.81918 -13.54917 -13.24864 -13.12974 -13.08367 -12.85881 -12.81495 -12.68015 -12.52221 -12.19239 -12.13775 -11.68300 -11.54125 -10.96658 -10.80496 -10.42381 -10.15834 -9.73358 -5.14571 -0.70856 -0.49742 0.35670 0.66324 1.09076 1.14001 1.54908 1.64541 1.88194 2.03690 2.24765 2.67452 2.72809 2.74692 2.95194 3.15433 3.29683 3.40844 3.46890 3.52794 3.64657 4.04205 4.18935 4.21019 4.25721 4.37855 4.39521 4.43535 4.57459 4.62630 4.75232 4.77404 4.90235 4.95550 4.95921 5.16046 5.18318 5.86036 6.15345 6.44201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.347 6.347 3 C 0.036 3.964 4 C 0.433 3.567 5 F -0.176 7.176 6 F -0.193 7.193 7 F -0.183 7.183 8 C -0.140 4.140 9 C 0.135 3.865 10 H 0.139 0.861 11 N -1.076 6.076 12 S 2.728 3.272 13 O -0.988 6.988 14 O -0.983 6.983 15 C -0.670 4.670 16 C -0.106 4.106 17 C -0.073 4.073 18 O -0.538 6.538 19 Si 0.755 3.245 20 S 0.179 5.821 21 C -0.206 4.206 22 C -0.093 4.093 23 C -0.151 4.151 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.106 0.894 27 H 0.136 0.864 28 H 0.089 0.911 29 H 0.433 0.567 30 H 0.133 0.867 31 H 0.393 0.607 32 H -0.262 1.262 33 H -0.258 1.258 34 H 0.198 0.802 35 H 0.161 0.839 36 H 0.122 0.878 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.479 7.810 2.182 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.265 6.265 3 C -0.007 4.007 4 C 0.378 3.622 5 F -0.157 7.157 6 F -0.174 7.174 7 F -0.164 7.164 8 C -0.179 4.179 9 C 0.027 3.973 10 H 0.157 0.843 11 N -0.841 5.841 12 S 2.817 3.183 13 O -0.978 6.978 14 O -0.974 6.974 15 C -0.772 4.772 16 C -0.227 4.227 17 C -0.184 4.184 18 O -0.347 6.347 19 Si 0.655 3.345 20 S 0.443 5.557 21 C -0.341 4.341 22 C -0.121 4.121 23 C -0.190 4.190 24 H 0.101 0.899 25 H 0.062 0.938 26 H 0.124 0.876 27 H 0.154 0.846 28 H 0.107 0.893 29 H 0.274 0.726 30 H 0.150 0.850 31 H 0.245 0.755 32 H -0.187 1.187 33 H -0.184 1.184 34 H 0.215 0.785 35 H 0.179 0.821 36 H 0.140 0.860 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.471 6.964 3.933 9.690 hybrid contribution 0.970 -0.664 -1.174 1.661 sum -4.501 6.300 2.759 8.220 Atomic orbital electron populations 1.23337 0.78702 1.05219 1.02191 1.88103 1.22076 1.22474 1.93807 1.24123 1.00696 0.86625 0.89239 1.21557 0.73920 0.78309 0.88402 1.93174 1.69796 1.55998 1.96746 1.93185 1.93925 1.70470 1.59840 1.93181 1.36312 1.90011 1.96934 1.23849 0.91720 1.06228 0.96094 1.21609 0.97347 0.85176 0.93172 0.84345 1.55371 1.58123 1.30063 1.40573 1.00692 0.72304 0.72525 0.72809 1.93555 1.33516 1.86004 1.84761 1.93553 1.81720 1.40126 1.81983 1.29701 1.01499 1.21298 1.24671 1.25197 0.97579 0.99999 0.99925 1.25273 1.04695 1.01905 0.86520 1.86609 1.96064 1.37705 1.14354 0.94075 0.72959 0.86054 0.81421 1.84496 1.09935 1.24507 1.36752 1.26220 0.97757 1.06200 1.03969 1.19880 1.01130 0.93792 0.97300 1.24189 1.00674 1.02265 0.91876 0.89890 0.93785 0.87611 0.84597 0.89274 0.72586 0.85033 0.75453 1.18678 1.18400 0.78536 0.82127 0.85969 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 10.39 113.37 1.18 1.17 16 2 O -0.35 0.75 8.93 -148.98 -1.33 -0.58 16 3 C 0.04 -0.17 0.84 -10.27 -0.01 -0.18 16 4 C 0.43 -0.25 2.60 71.98 0.19 -0.06 16 5 F -0.18 0.16 15.80 44.97 0.71 0.87 16 6 F -0.19 -0.98 17.12 44.97 0.77 -0.21 16 7 F -0.18 0.14 15.39 44.97 0.69 0.83 16 8 C -0.14 0.70 7.14 31.12 0.22 0.92 16 9 C 0.14 -1.12 4.41 45.52 0.20 -0.92 16 10 H 0.14 -1.65 8.05 -2.39 -0.02 -1.67 16 11 N -1.08 4.20 3.40 -167.20 -0.57 3.63 16 12 S 2.73 9.61 4.87 -56.49 -0.27 9.33 16 13 O -0.99 -8.89 17.07 -128.00 -2.19 -11.07 16 14 O -0.98 -10.90 16.61 -121.71 -2.02 -12.92 16 15 C -0.67 0.38 5.79 21.22 0.12 0.50 16 16 C -0.11 0.30 5.72 24.59 0.14 0.44 16 17 C -0.07 0.26 2.18 71.24 0.16 0.41 16 18 O -0.54 3.08 8.26 -135.41 -1.12 1.96 16 19 Si 0.76 -5.07 31.20 68.60 2.14 -2.93 16 20 S 0.18 -0.94 20.82 -56.49 -1.18 -2.11 16 21 C -0.21 1.08 11.23 66.72 0.75 1.82 16 22 C -0.09 0.19 9.70 21.22 0.21 0.40 16 23 C -0.15 1.83 6.58 31.12 0.20 2.03 16 24 H 0.08 -1.00 6.43 -2.39 -0.02 -1.02 16 25 H 0.04 -0.19 6.61 -2.38 -0.02 -0.20 16 26 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 27 H 0.14 -1.06 7.03 -2.39 -0.02 -1.08 16 28 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.43 -1.84 6.17 -96.74 -0.60 -2.44 16 30 H 0.13 -0.03 7.96 -2.38 -0.02 -0.05 16 31 H 0.39 -5.51 6.02 -74.06 -0.45 -5.95 16 32 H -0.26 0.24 7.11 99.48 0.71 0.94 16 33 H -0.26 0.69 7.11 99.48 0.71 1.39 16 34 H 0.20 -1.99 8.06 -2.91 -0.02 -2.02 16 35 H 0.16 -0.45 7.74 -2.91 -0.02 -0.47 16 36 H 0.12 -2.07 4.95 -2.39 -0.01 -2.09 16 37 H 0.14 -2.21 8.03 -2.39 -0.02 -2.23 16 Total: 0.00 -23.63 333.58 -0.84 -24.46 By element: Atomic # 1 Polarization: -17.97 SS G_CDS: 0.17 Total: -17.80 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 3.36 Total: 6.54 kcal Atomic # 7 Polarization: 4.20 SS G_CDS: -0.57 Total: 3.63 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -6.66 Total: -22.61 kcal Atomic # 9 Polarization: -0.68 SS G_CDS: 2.17 Total: 1.49 kcal Atomic # 14 Polarization: -5.07 SS G_CDS: 2.14 Total: -2.93 kcal Atomic # 16 Polarization: 8.67 SS G_CDS: -1.45 Total: 7.22 kcal Total: -23.63 -0.84 -24.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312456_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.332 kcal (2) G-P(sol) polarization free energy of solvation -23.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds