Wall clock time and date at job start Mon Mar 8 2021 09:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00099 * 2 1 4 4 C 1.52996 * 112.85285 * 294.00948 * 3 2 1 5 5 F 1.39896 * 109.47429 * 195.88438 * 4 3 2 6 6 F 1.39905 * 109.46696 * 315.88536 * 4 3 2 7 7 F 1.39902 * 109.47345 * 75.88161 * 4 3 2 8 8 C 1.53781 * 113.69213 * 162.73905 * 3 2 1 9 9 C 1.53782 * 87.08318 * 270.87617 * 8 3 2 10 10 H 1.09001 * 113.69060 * 220.00725 * 9 8 3 11 11 N 1.46495 * 113.61586 * 89.11335 * 9 8 3 12 12 S 1.65604 * 120.00053 * 117.50352 * 11 9 8 13 13 O 1.42100 * 106.40150 * 311.46109 * 12 11 9 14 14 O 1.42101 * 106.40140 * 178.54131 * 12 11 9 15 15 C 1.76200 * 107.21631 * 65.00220 * 12 11 9 16 16 C 1.33385 * 122.53944 * 270.02435 * 15 12 11 17 17 S 1.75884 * 109.59449 * 179.73583 * 16 15 12 18 18 C 1.75878 * 90.96927 * 0.31204 * 17 16 15 19 19 C 1.50704 * 125.20131 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.47369 * 244.69783 * 19 18 17 21 21 Si 1.86302 * 109.47096 * 4.69996 * 19 18 17 22 22 C 1.33381 * 109.59560 * 359.68850 * 18 17 16 23 23 C 1.53781 * 87.07905 * 334.56660 * 9 8 3 24 24 H 1.09005 * 109.47054 * 184.84664 * 1 2 3 25 25 H 1.09001 * 109.47418 * 304.84217 * 1 2 3 26 26 H 1.09002 * 109.47185 * 64.84734 * 1 2 3 27 27 H 1.08996 * 113.61744 * 156.32338 * 8 3 2 28 28 H 1.09009 * 113.61370 * 25.42382 * 8 3 2 29 29 H 0.97004 * 120.00560 * 297.50888 * 11 9 8 30 30 H 1.08008 * 125.20506 * 0.02562 * 16 15 12 31 31 H 1.09000 * 109.46555 * 124.69485 * 19 18 17 32 32 H 0.96697 * 113.99914 * 59.99964 * 20 19 18 33 33 H 1.48505 * 109.99886 * 179.97438 * 21 19 18 34 34 H 1.48499 * 109.99779 * 301.31616 * 21 19 18 35 35 H 1.08004 * 122.54271 * 180.26382 * 22 18 17 36 36 H 1.09001 * 113.61359 * 139.98469 * 23 9 8 37 37 H 1.08997 * 113.61444 * 270.88398 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7278 2.0816 -1.2879 5 9 2.6016 3.1704 -1.3773 6 9 1.9163 1.2406 -2.3899 7 9 0.4072 2.5433 -1.2742 8 6 3.4900 1.3229 0.4178 9 6 2.9979 1.4841 1.8659 10 1 3.5934 2.1808 2.4558 11 7 2.7666 0.2107 2.5522 12 16 3.6548 -0.1799 3.8943 13 8 5.0146 0.0611 3.5596 14 8 3.1757 -1.4416 4.3392 15 6 3.2383 0.9821 5.1516 16 6 3.8957 2.1315 5.3126 17 16 3.1959 3.0284 6.6540 18 6 2.0211 1.7500 6.9349 19 6 0.9651 1.7615 8.0100 20 8 1.2199 0.7064 8.9394 21 14 1.0040 3.3971 8.9012 22 6 2.2038 0.7716 6.0470 23 6 1.7209 2.1085 1.2792 24 1 -0.3633 -1.0240 0.0868 25 1 -0.3634 0.5871 0.8434 26 1 -0.3634 0.4368 -0.9302 27 1 4.0390 2.1873 0.0445 28 1 4.0067 0.3807 0.2346 29 1 2.0933 -0.4038 2.2206 30 1 4.7273 2.4631 4.7084 31 1 -0.0159 1.6178 7.5571 32 1 2.0777 0.7702 9.3813 33 1 -0.0333 3.4214 9.9636 34 1 2.3463 3.6195 9.4961 35 1 1.5908 -0.1174 6.0277 36 1 0.8093 1.8006 1.7913 37 1 1.7862 3.1877 1.1413 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17312456_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:14 Heat of formation + Delta-G solvation = -219.960488 kcal Electronic energy + Delta-G solvation = -31184.460892 eV Core-core repulsion = 26155.308441 eV Total energy + Delta-G solvation = -5029.152451 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.035 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -51.20859 -48.75874 -48.63742 -41.56299 -39.60942 -38.31527 -37.74778 -37.59301 -36.91191 -33.98430 -31.96013 -28.99022 -28.19504 -27.32185 -26.96894 -25.01884 -24.18068 -21.58747 -21.44176 -20.57389 -19.72594 -19.50060 -19.36699 -19.13307 -18.50052 -18.01445 -17.73946 -17.45167 -17.03266 -16.55328 -16.50367 -15.92012 -15.88222 -15.63780 -15.60733 -15.53237 -15.16325 -15.05249 -14.92633 -14.84619 -14.64542 -14.44295 -14.32235 -14.19493 -13.90720 -13.77488 -13.45150 -13.21906 -13.10548 -13.04918 -12.96767 -12.81709 -12.54359 -12.49004 -12.40479 -11.92725 -11.65520 -11.09568 -10.92783 -10.77433 -10.35000 -9.95687 -5.24234 -0.85742 -0.58888 0.21507 0.47952 0.88053 1.06692 1.38294 1.49845 1.75389 1.82058 1.99268 2.47610 2.55935 2.63675 2.71561 3.09011 3.16079 3.21768 3.29809 3.42376 3.50882 3.68479 3.72546 3.85920 4.01744 4.10356 4.14235 4.21380 4.26261 4.30759 4.40672 4.53372 4.56364 4.66297 4.80358 4.82424 4.96868 5.55874 5.76540 6.17032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.332 6.332 3 C 0.040 3.960 4 C 0.438 3.562 5 F -0.174 7.174 6 F -0.173 7.173 7 F -0.182 7.182 8 C -0.131 4.131 9 C 0.143 3.857 10 H 0.117 0.883 11 N -1.093 6.093 12 S 2.709 3.291 13 O -0.948 6.948 14 O -0.947 6.947 15 C -0.686 4.686 16 C -0.089 4.089 17 S 0.163 5.837 18 C -0.227 4.227 19 C -0.034 4.034 20 O -0.521 6.521 21 Si 0.650 3.350 22 C -0.042 4.042 23 C -0.163 4.163 24 H 0.104 0.896 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.426 0.574 30 H 0.187 0.813 31 H 0.130 0.870 32 H 0.379 0.621 33 H -0.233 1.233 34 H -0.239 1.239 35 H 0.157 0.843 36 H 0.102 0.898 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.289 5.722 0.355 6.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.249 6.249 3 C -0.002 4.002 4 C 0.383 3.617 5 F -0.156 7.156 6 F -0.155 7.155 7 F -0.163 7.163 8 C -0.170 4.170 9 C 0.034 3.966 10 H 0.135 0.865 11 N -0.853 5.853 12 S 2.795 3.205 13 O -0.938 6.938 14 O -0.937 6.937 15 C -0.786 4.786 16 C -0.229 4.229 17 S 0.427 5.573 18 C -0.344 4.344 19 C -0.146 4.146 20 O -0.328 6.328 21 Si 0.549 3.451 22 C -0.070 4.070 23 C -0.202 4.202 24 H 0.122 0.878 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.263 0.737 30 H 0.204 0.796 31 H 0.147 0.853 32 H 0.227 0.773 33 H -0.156 1.156 34 H -0.163 1.163 35 H 0.175 0.825 36 H 0.120 0.880 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.660 6.628 1.780 7.061 hybrid contribution -0.626 -1.492 -0.489 1.690 sum -2.286 5.136 1.291 5.768 Atomic orbital electron populations 1.23185 0.79379 1.04529 1.01673 1.88085 1.21160 1.21830 1.93836 1.23957 0.99961 0.86381 0.89948 1.21137 0.74322 0.78693 0.87549 1.93180 1.69355 1.56448 1.96606 1.93229 1.94774 1.70826 1.56632 1.93197 1.36579 1.89673 1.96846 1.23732 0.91336 1.06670 0.95287 1.21343 0.96643 0.84974 0.93605 0.86525 1.55442 1.57192 1.28349 1.44306 1.01702 0.73517 0.73034 0.72239 1.93626 1.31623 1.85691 1.82826 1.93631 1.81291 1.37990 1.80769 1.30053 1.09897 1.15974 1.22671 1.25953 1.00977 0.95771 1.00150 1.84469 1.25311 1.20455 1.27103 1.25026 1.04686 0.99491 1.05234 1.24419 0.98169 1.01580 0.90448 1.86652 1.41694 1.47145 1.57267 0.95342 0.83344 0.79750 0.86697 1.19612 0.95740 0.99553 0.92124 1.24053 1.00575 1.01514 0.94062 0.87805 0.92495 0.92759 0.85612 0.87479 0.73669 0.79624 0.85270 0.77307 1.15556 1.16309 0.82532 0.87986 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.30 101.05 1.04 1.02 16 2 O -0.33 0.35 8.93 -35.23 -0.31 0.04 16 3 C 0.04 -0.08 0.84 -89.81 -0.08 -0.15 16 4 C 0.44 -0.08 2.52 37.16 0.09 0.01 16 5 F -0.17 0.05 15.81 2.25 0.04 0.09 16 6 F -0.17 -0.33 17.10 2.25 0.04 -0.29 16 7 F -0.18 -0.03 15.39 2.25 0.03 0.01 16 8 C -0.13 0.36 7.13 -25.92 -0.18 0.17 16 9 C 0.14 -0.53 4.44 -67.12 -0.30 -0.83 16 10 H 0.12 -0.69 7.93 -51.93 -0.41 -1.10 16 11 N -1.09 2.62 5.68 -4.20 -0.02 2.60 16 12 S 2.71 0.64 5.74 -107.50 -0.62 0.02 16 13 O -0.95 -2.52 17.40 -57.17 -0.99 -3.51 16 14 O -0.95 -3.51 17.63 -57.17 -1.01 -4.51 16 15 C -0.69 0.62 5.86 -41.21 -0.24 0.38 16 16 C -0.09 0.20 10.58 29.04 0.31 0.51 16 17 S 0.16 -0.38 20.59 -107.50 -2.21 -2.60 16 18 C -0.23 0.28 5.70 -36.00 -0.21 0.07 16 19 C -0.03 0.05 2.96 36.01 0.11 0.16 16 20 O -0.52 -0.14 12.88 -35.23 -0.45 -0.59 16 21 Si 0.65 -1.40 30.98 -169.99 -5.27 -6.66 16 22 C -0.04 0.02 9.59 -41.21 -0.40 -0.38 16 23 C -0.16 0.70 6.70 -25.92 -0.17 0.53 16 24 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 25 H 0.06 -0.24 6.55 -51.93 -0.34 -0.58 16 26 H 0.05 -0.10 6.69 -51.93 -0.35 -0.45 16 27 H 0.13 -0.52 7.02 -51.93 -0.36 -0.89 16 28 H 0.11 -0.20 8.14 -51.92 -0.42 -0.62 16 29 H 0.43 -1.21 7.53 -34.47 -0.26 -1.47 16 30 H 0.19 -0.84 8.00 -52.48 -0.42 -1.26 16 31 H 0.13 -0.35 7.96 -51.93 -0.41 -0.76 16 32 H 0.38 -0.94 8.70 45.56 0.40 -0.54 16 33 H -0.23 -0.18 7.11 56.52 0.40 0.22 16 34 H -0.24 0.09 7.11 56.52 0.40 0.49 16 35 H 0.16 -0.06 7.97 -52.48 -0.42 -0.48 16 36 H 0.10 -0.51 6.67 -51.93 -0.35 -0.86 16 37 H 0.12 -0.67 8.04 -51.93 -0.42 -1.09 16 LS Contribution 348.32 15.07 5.25 5.25 Total: 0.00 -9.92 348.32 -8.94 -18.86 By element: Atomic # 1 Polarization: -6.81 SS G_CDS: -3.38 Total: -10.19 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.03 Total: 1.49 kcal Atomic # 7 Polarization: 2.62 SS G_CDS: -0.02 Total: 2.60 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -2.77 Total: -8.57 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.11 Total: -0.19 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.27 Total: -6.66 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.83 Total: -2.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -9.92 -8.94 -18.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312456_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.097 kcal (2) G-P(sol) polarization free energy of solvation -9.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds