Wall clock time and date at job start Mon Mar 8 2021 09:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00099 * 2 1 4 4 C 1.52996 * 112.85285 * 294.00948 * 3 2 1 5 5 F 1.39896 * 109.47429 * 195.88438 * 4 3 2 6 6 F 1.39905 * 109.46696 * 315.88536 * 4 3 2 7 7 F 1.39902 * 109.47345 * 75.88161 * 4 3 2 8 8 C 1.53781 * 113.69213 * 162.73905 * 3 2 1 9 9 C 1.53782 * 87.08318 * 270.87617 * 8 3 2 10 10 H 1.09001 * 113.69060 * 220.00725 * 9 8 3 11 11 N 1.46495 * 113.61586 * 89.11335 * 9 8 3 12 12 S 1.65604 * 120.00053 * 117.50352 * 11 9 8 13 13 O 1.42100 * 106.40150 * 311.46109 * 12 11 9 14 14 O 1.42101 * 106.40140 * 178.54131 * 12 11 9 15 15 C 1.76200 * 107.21631 * 65.00220 * 12 11 9 16 16 C 1.33385 * 122.53944 * 270.02435 * 15 12 11 17 17 S 1.75884 * 109.59449 * 179.73583 * 16 15 12 18 18 C 1.75878 * 90.96927 * 0.31204 * 17 16 15 19 19 C 1.50704 * 125.20131 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.47369 * 244.69783 * 19 18 17 21 21 Si 1.86302 * 109.47096 * 4.69996 * 19 18 17 22 22 C 1.33381 * 109.59560 * 359.68850 * 18 17 16 23 23 C 1.53781 * 87.07905 * 334.56660 * 9 8 3 24 24 H 1.09005 * 109.47054 * 184.84664 * 1 2 3 25 25 H 1.09001 * 109.47418 * 304.84217 * 1 2 3 26 26 H 1.09002 * 109.47185 * 64.84734 * 1 2 3 27 27 H 1.08996 * 113.61744 * 156.32338 * 8 3 2 28 28 H 1.09009 * 113.61370 * 25.42382 * 8 3 2 29 29 H 0.97004 * 120.00560 * 297.50888 * 11 9 8 30 30 H 1.08008 * 125.20506 * 0.02562 * 16 15 12 31 31 H 1.09000 * 109.46555 * 124.69485 * 19 18 17 32 32 H 0.96697 * 113.99914 * 59.99964 * 20 19 18 33 33 H 1.48505 * 109.99886 * 179.97438 * 21 19 18 34 34 H 1.48499 * 109.99779 * 301.31616 * 21 19 18 35 35 H 1.08004 * 122.54271 * 180.26382 * 22 18 17 36 36 H 1.09001 * 113.61359 * 139.98469 * 23 9 8 37 37 H 1.08997 * 113.61444 * 270.88398 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7278 2.0816 -1.2879 5 9 2.6016 3.1704 -1.3773 6 9 1.9163 1.2406 -2.3899 7 9 0.4072 2.5433 -1.2742 8 6 3.4900 1.3229 0.4178 9 6 2.9979 1.4841 1.8659 10 1 3.5934 2.1808 2.4558 11 7 2.7666 0.2107 2.5522 12 16 3.6548 -0.1799 3.8943 13 8 5.0146 0.0611 3.5596 14 8 3.1757 -1.4416 4.3392 15 6 3.2383 0.9821 5.1516 16 6 3.8957 2.1315 5.3126 17 16 3.1959 3.0284 6.6540 18 6 2.0211 1.7500 6.9349 19 6 0.9651 1.7615 8.0100 20 8 1.2199 0.7064 8.9394 21 14 1.0040 3.3971 8.9012 22 6 2.2038 0.7716 6.0470 23 6 1.7209 2.1085 1.2792 24 1 -0.3633 -1.0240 0.0868 25 1 -0.3634 0.5871 0.8434 26 1 -0.3634 0.4368 -0.9302 27 1 4.0390 2.1873 0.0445 28 1 4.0067 0.3807 0.2346 29 1 2.0933 -0.4038 2.2206 30 1 4.7273 2.4631 4.7084 31 1 -0.0159 1.6178 7.5571 32 1 2.0777 0.7702 9.3813 33 1 -0.0333 3.4214 9.9636 34 1 2.3463 3.6195 9.4961 35 1 1.5908 -0.1174 6.0277 36 1 0.8093 1.8006 1.7913 37 1 1.7862 3.1877 1.1413 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17312456_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:14 Heat of formation + Delta-G solvation = -223.972619 kcal Electronic energy + Delta-G solvation = -31184.634871 eV Core-core repulsion = 26155.308441 eV Total energy + Delta-G solvation = -5029.326430 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.035 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.19224 -48.72198 -48.67161 -41.32737 -39.49671 -38.41794 -37.67004 -37.40819 -37.03107 -33.81135 -31.84089 -28.81136 -27.99911 -27.19067 -26.69261 -24.91245 -24.01650 -21.50226 -21.25737 -20.44468 -19.67856 -19.48105 -19.25886 -19.02436 -18.46449 -17.92401 -17.66903 -17.24549 -16.88067 -16.40104 -16.37255 -15.85071 -15.73198 -15.59793 -15.56128 -15.51758 -15.12614 -14.97536 -14.89751 -14.84825 -14.52876 -14.28327 -14.20313 -14.01897 -13.83992 -13.63846 -13.34823 -13.24343 -13.14762 -12.95101 -12.90746 -12.58361 -12.51640 -12.32937 -12.24557 -11.71420 -11.53407 -10.91864 -10.81376 -10.57667 -10.20706 -9.79367 -5.09109 -0.81256 -0.45537 0.37595 0.62082 0.97407 1.20510 1.50796 1.59489 1.87071 1.96802 2.18178 2.62674 2.67225 2.69518 2.91495 3.20166 3.31694 3.35694 3.45550 3.58373 3.64277 3.93148 4.02268 4.15267 4.25716 4.31041 4.35531 4.48046 4.51216 4.57158 4.67164 4.73595 4.83435 4.92270 4.93306 5.06043 5.11227 5.78007 5.96575 6.35750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.347 6.347 3 C 0.033 3.967 4 C 0.433 3.567 5 F -0.174 7.174 6 F -0.191 7.191 7 F -0.185 7.185 8 C -0.137 4.137 9 C 0.138 3.862 10 H 0.144 0.856 11 N -1.086 6.086 12 S 2.726 3.274 13 O -0.975 6.975 14 O -0.989 6.989 15 C -0.691 4.691 16 C -0.085 4.085 17 S 0.193 5.807 18 C -0.233 4.233 19 C -0.043 4.043 20 O -0.543 6.543 21 Si 0.725 3.275 22 C -0.055 4.055 23 C -0.151 4.151 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.140 0.860 28 H 0.093 0.907 29 H 0.428 0.572 30 H 0.211 0.789 31 H 0.139 0.861 32 H 0.388 0.612 33 H -0.276 1.276 34 H -0.260 1.260 35 H 0.149 0.851 36 H 0.112 0.888 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 7.345 0.648 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.265 6.265 3 C -0.010 4.010 4 C 0.378 3.622 5 F -0.155 7.155 6 F -0.172 7.172 7 F -0.166 7.166 8 C -0.176 4.176 9 C 0.030 3.970 10 H 0.161 0.839 11 N -0.847 5.847 12 S 2.815 3.185 13 O -0.965 6.965 14 O -0.979 6.979 15 C -0.793 4.793 16 C -0.224 4.224 17 S 0.457 5.543 18 C -0.351 4.351 19 C -0.154 4.154 20 O -0.351 6.351 21 Si 0.627 3.373 22 C -0.084 4.084 23 C -0.190 4.190 24 H 0.129 0.871 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.158 0.842 28 H 0.112 0.888 29 H 0.266 0.734 30 H 0.227 0.773 31 H 0.157 0.843 32 H 0.237 0.763 33 H -0.202 1.202 34 H -0.185 1.185 35 H 0.167 0.833 36 H 0.130 0.870 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.516 8.229 2.036 8.611 hybrid contribution -0.687 -1.949 -0.573 2.144 sum -2.203 6.280 1.463 6.814 Atomic orbital electron populations 1.23302 0.78799 1.05331 1.01838 1.88068 1.21941 1.22601 1.93850 1.24189 1.00638 0.86336 0.89814 1.21521 0.74157 0.78717 0.87788 1.93172 1.69302 1.56443 1.96628 1.93189 1.94872 1.71405 1.57763 1.93185 1.36860 1.89720 1.96853 1.23870 0.90951 1.06693 0.96096 1.21593 0.97453 0.84634 0.93348 0.83886 1.55204 1.56818 1.29157 1.43540 1.00828 0.72873 0.72392 0.72423 1.93586 1.33441 1.86042 1.83433 1.93572 1.81827 1.40783 1.81714 1.29735 1.10614 1.16301 1.22634 1.26316 1.00941 0.95082 1.00098 1.84391 1.24216 1.19261 1.26411 1.25076 1.05056 0.99957 1.04975 1.24662 0.98769 1.01601 0.90416 1.86621 1.42574 1.48148 1.57779 0.94520 0.79982 0.78242 0.84534 1.19640 0.96186 0.99729 0.92800 1.24109 1.00644 1.02227 0.92057 0.87086 0.90768 0.93839 0.84164 0.88794 0.73381 0.77263 0.84306 0.76258 1.20183 1.18502 0.83339 0.86981 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.30 113.37 1.17 1.15 16 2 O -0.35 0.60 8.93 -148.98 -1.33 -0.73 16 3 C 0.03 -0.13 0.84 -10.27 -0.01 -0.14 16 4 C 0.43 -0.10 2.52 71.98 0.18 0.08 16 5 F -0.17 0.17 15.81 44.97 0.71 0.88 16 6 F -0.19 -0.93 17.10 44.97 0.77 -0.16 16 7 F -0.18 -0.05 15.39 44.97 0.69 0.64 16 8 C -0.14 0.80 7.13 31.12 0.22 1.02 16 9 C 0.14 -1.19 4.44 45.52 0.20 -0.98 16 10 H 0.14 -2.01 7.93 -2.39 -0.02 -2.03 16 11 N -1.09 5.34 5.68 -167.20 -0.95 4.39 16 12 S 2.73 2.35 5.74 -56.49 -0.32 2.03 16 13 O -0.98 -5.33 17.40 -128.00 -2.23 -7.56 16 14 O -0.99 -8.76 17.63 -128.00 -2.26 -11.01 16 15 C -0.69 1.62 5.86 21.22 0.12 1.74 16 16 C -0.09 0.52 10.58 66.72 0.71 1.23 16 17 S 0.19 -1.24 20.59 -56.49 -1.16 -2.40 16 18 C -0.23 0.72 5.70 24.59 0.14 0.87 16 19 C -0.04 0.15 2.96 71.24 0.21 0.36 16 20 O -0.54 -0.45 12.88 -148.98 -1.92 -2.37 16 21 Si 0.73 -3.40 30.98 68.60 2.13 -1.27 16 22 C -0.05 0.05 9.59 21.22 0.20 0.25 16 23 C -0.15 1.54 6.70 31.12 0.21 1.74 16 24 H 0.11 -0.79 8.14 -2.38 -0.02 -0.81 16 25 H 0.07 -0.67 6.55 -2.39 -0.02 -0.68 16 26 H 0.04 -0.13 6.69 -2.39 -0.02 -0.14 16 27 H 0.14 -1.29 7.02 -2.39 -0.02 -1.31 16 28 H 0.09 -0.29 8.14 -2.38 -0.02 -0.31 16 29 H 0.43 -2.29 7.53 -96.74 -0.73 -3.02 16 30 H 0.21 -2.41 8.00 -2.91 -0.02 -2.43 16 31 H 0.14 -0.80 7.96 -2.39 -0.02 -0.82 16 32 H 0.39 -1.78 8.70 -74.06 -0.64 -2.43 16 33 H -0.28 -0.67 7.11 99.48 0.71 0.03 16 34 H -0.26 0.37 7.11 99.48 0.71 1.07 16 35 H 0.15 0.04 7.97 -2.91 -0.02 0.01 16 36 H 0.11 -1.33 6.67 -2.39 -0.02 -1.35 16 37 H 0.14 -1.90 8.04 -2.39 -0.02 -1.92 16 Total: 0.00 -23.68 348.32 -2.68 -26.37 By element: Atomic # 1 Polarization: -15.95 SS G_CDS: -0.17 Total: -16.12 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 3.36 Total: 7.32 kcal Atomic # 7 Polarization: 5.34 SS G_CDS: -0.95 Total: 4.39 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -7.73 Total: -21.67 kcal Atomic # 9 Polarization: -0.81 SS G_CDS: 2.17 Total: 1.36 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: 2.13 Total: -1.27 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -1.49 Total: -0.37 kcal Total: -23.68 -2.68 -26.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312456_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.606 kcal (2) G-P(sol) polarization free energy of solvation -23.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds