Wall clock time and date at job start Mon Mar 8 2021 09:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00033 * 2 1 4 4 C 1.52995 * 112.84922 * 75.23587 * 3 2 1 5 5 F 1.39899 * 109.47502 * 289.13701 * 4 3 2 6 6 F 1.39898 * 109.47276 * 49.14186 * 4 3 2 7 7 F 1.39902 * 109.46812 * 169.13833 * 4 3 2 8 8 C 1.53779 * 113.61075 * 304.03747 * 3 2 1 9 9 C 1.53776 * 87.08154 * 270.88654 * 8 3 2 10 10 H 1.09004 * 113.61769 * 219.93776 * 9 8 3 11 11 N 1.46495 * 113.61629 * 89.11891 * 9 8 3 12 12 S 1.65603 * 120.00035 * 143.60550 * 11 9 8 13 13 O 1.42097 * 106.40630 * 308.90517 * 12 11 9 14 14 O 1.42102 * 106.40113 * 175.98667 * 12 11 9 15 15 C 1.76198 * 107.21578 * 62.45080 * 12 11 9 16 16 C 1.33394 * 122.54269 * 91.31340 * 15 12 11 17 17 C 1.50696 * 125.19958 * 0.02562 * 16 15 12 18 18 S 1.75887 * 109.59013 * 179.75016 * 16 15 12 19 19 C 1.75878 * 90.97356 * 0.22754 * 18 16 15 20 20 C 1.50705 * 125.20279 * 180.02562 * 19 18 16 21 21 C 1.33386 * 109.59608 * 359.97438 * 19 18 16 22 22 C 1.50700 * 122.54366 * 180.02562 * 21 19 18 23 23 O 1.42904 * 109.46681 * 71.65806 * 22 21 19 24 24 Si 1.86301 * 109.46819 * 311.66437 * 22 21 19 25 25 C 1.53779 * 87.17732 * 334.52680 * 9 8 3 26 26 H 1.09003 * 109.47205 * 185.38384 * 1 2 3 27 27 H 1.09000 * 109.47366 * 305.38235 * 1 2 3 28 28 H 1.08997 * 109.46910 * 65.38161 * 1 2 3 29 29 H 1.09005 * 113.61219 * 156.33652 * 8 3 2 30 30 H 1.08992 * 113.61656 * 25.43849 * 8 3 2 31 31 H 0.96999 * 120.00248 * 323.61217 * 11 9 8 32 32 H 1.09007 * 109.46973 * 179.72237 * 17 16 15 33 33 H 1.08998 * 109.47366 * 59.72154 * 17 16 15 34 34 H 1.08998 * 109.47403 * 299.72001 * 17 16 15 35 35 H 1.08997 * 109.46998 * 3.20383 * 20 19 18 36 36 H 1.08996 * 109.46944 * 123.20883 * 20 19 18 37 37 H 1.09004 * 109.46899 * 243.21185 * 20 19 18 38 38 H 1.08991 * 109.47571 * 191.66200 * 22 21 19 39 39 H 0.96700 * 113.99685 * 64.56901 * 23 22 21 40 40 H 1.48501 * 109.99827 * 175.00322 * 24 22 21 41 41 H 1.48503 * 110.00048 * 296.31752 * 24 22 21 42 42 H 1.08998 * 113.61613 * 140.01959 * 25 9 8 43 43 H 1.08997 * 113.61528 * 270.93292 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.9236 1.9943 1.3633 5 9 0.5953 2.3478 1.6238 6 9 2.3771 1.1203 2.3571 7 9 2.7195 3.1449 1.3558 8 6 1.5403 2.1889 -1.1676 9 6 2.7129 1.6086 -1.9756 10 1 3.2191 2.3444 -2.6006 11 7 2.3753 0.3818 -2.7015 12 16 3.0266 0.0990 -4.1976 13 8 2.7836 1.2676 -4.9685 14 8 2.5878 -1.1949 -4.5882 15 6 4.7735 -0.0086 -3.9940 16 6 5.3995 -1.1641 -3.7654 17 6 4.7277 -2.5082 -3.6512 18 16 7.1296 -0.8800 -3.6255 19 6 6.8980 0.8438 -3.8864 20 6 7.9979 1.8737 -3.9148 21 6 5.6001 1.1001 -4.0564 22 6 5.0738 2.4906 -4.3026 23 8 5.4331 2.9093 -5.6209 24 14 5.8104 3.6631 -3.0562 25 6 3.4148 1.3555 -0.6309 26 1 -0.3634 -1.0231 0.0964 27 1 -0.3634 0.5950 0.8378 28 1 -0.3633 0.4281 -0.9342 29 1 1.6316 3.2572 -0.9712 30 1 0.5613 1.9117 -1.5584 31 1 1.7702 -0.2649 -2.3059 32 1 5.4796 -3.2759 -3.4679 33 1 4.1999 -2.7306 -4.5785 34 1 4.0176 -2.4905 -2.8243 35 1 8.9625 1.3781 -3.8056 36 1 7.9697 2.4092 -4.8637 37 1 7.8568 2.5785 -3.0953 38 1 3.9883 2.4910 -4.2046 39 1 5.0266 2.3852 -6.3245 40 1 5.3948 5.0557 -3.3615 41 1 5.3714 3.2906 -1.6873 42 1 3.9480 0.4058 -0.5887 43 1 4.0177 2.1963 -0.2880 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17312456_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:18 Heat of formation + Delta-G solvation = -220.737114 kcal Electronic energy + Delta-G solvation = -37472.615521 eV Core-core repulsion = 32132.354155 eV Total energy + Delta-G solvation = -5340.261366 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.066 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -51.23598 -48.79152 -48.66709 -41.70231 -40.28098 -38.61171 -37.63127 -37.05823 -36.92583 -34.36972 -34.08003 -30.93075 -29.15586 -28.28884 -28.02977 -26.96594 -25.98154 -24.26069 -23.27463 -21.53648 -21.06597 -20.23997 -19.76062 -19.53559 -19.33182 -18.97838 -18.51254 -18.13885 -17.67604 -17.32435 -16.75305 -16.64781 -16.21054 -16.04904 -15.94248 -15.62869 -15.56566 -15.49351 -15.23455 -15.12516 -14.92238 -14.88437 -14.76640 -14.62736 -14.49759 -14.43818 -14.27876 -14.12520 -13.80335 -13.57938 -13.49311 -13.38311 -13.26161 -13.13420 -13.11725 -12.90860 -12.70856 -12.56772 -12.50361 -12.09724 -12.01478 -11.79618 -11.22470 -11.14221 -10.93419 -10.85090 -10.05112 -9.56635 -4.86165 -0.88539 -0.47186 0.33440 0.64546 0.81808 1.32602 1.44804 1.53365 1.72686 1.93214 1.98035 2.40203 2.50280 2.55404 2.64177 3.01207 3.16673 3.23133 3.36929 3.41694 3.57395 3.66573 3.79608 3.86862 3.95027 3.98492 4.06564 4.11310 4.13874 4.18625 4.19409 4.34526 4.37942 4.40939 4.47117 4.49520 4.55260 4.60445 4.75142 4.84331 4.93768 5.02002 5.18274 5.48830 5.66820 6.61155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.332 6.332 3 C 0.043 3.957 4 C 0.441 3.559 5 F -0.180 7.180 6 F -0.172 7.172 7 F -0.175 7.175 8 C -0.162 4.162 9 C 0.134 3.866 10 H 0.113 0.887 11 N -1.094 6.094 12 S 2.705 3.295 13 O -0.948 6.948 14 O -0.947 6.947 15 C -0.688 4.688 16 C -0.047 4.047 17 C -0.116 4.116 18 S 0.166 5.834 19 C -0.168 4.168 20 C -0.087 4.087 21 C -0.080 4.080 22 C -0.085 4.085 23 O -0.527 6.527 24 Si 0.693 3.307 25 C -0.136 4.136 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.425 0.575 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.370 0.630 40 H -0.241 1.241 41 H -0.237 1.237 42 H 0.107 0.893 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -1.141 1.424 3.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.250 6.250 3 C 0.000 4.000 4 C 0.386 3.614 5 F -0.162 7.162 6 F -0.154 7.154 7 F -0.156 7.156 8 C -0.201 4.201 9 C 0.025 3.975 10 H 0.131 0.869 11 N -0.853 5.853 12 S 2.793 3.207 13 O -0.938 6.938 14 O -0.937 6.937 15 C -0.788 4.788 16 C -0.169 4.169 17 C -0.174 4.174 18 S 0.433 5.567 19 C -0.286 4.286 20 C -0.144 4.144 21 C -0.091 4.091 22 C -0.196 4.196 23 O -0.332 6.332 24 Si 0.590 3.410 25 C -0.175 4.175 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.263 0.737 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.116 0.884 39 H 0.218 0.782 40 H -0.165 1.165 41 H -0.161 1.161 42 H 0.125 0.875 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.791 -1.172 1.793 4.354 hybrid contribution -2.428 -0.097 0.009 2.430 sum 1.363 -1.268 1.802 2.591 Atomic orbital electron populations 1.23264 0.79311 1.04748 1.01926 1.88070 1.21291 1.21747 1.93845 1.23908 1.00266 0.86985 0.88855 1.21082 0.73835 0.77613 0.88883 1.93179 1.35402 1.92394 1.95185 1.93224 1.88834 1.68856 1.64439 1.93189 1.74128 1.51551 1.96767 1.24040 1.01174 1.01227 0.93706 1.21513 0.96463 0.86302 0.93199 0.86937 1.55417 1.61450 1.29496 1.38959 1.01651 0.73029 0.73658 0.72332 1.93550 1.84052 1.49264 1.66911 1.93609 1.80466 1.39569 1.80072 1.29411 1.27094 0.98261 1.24079 1.24574 0.97734 0.98184 0.96369 1.20953 1.00768 0.89804 1.05905 1.84461 1.03490 1.01685 1.67080 1.24415 0.97947 0.97790 1.08480 1.20444 0.94577 0.95271 1.04107 1.18598 0.92275 0.95406 1.02784 1.25753 1.03901 0.96624 0.93334 1.86654 1.73695 1.59335 1.13499 0.93084 0.94392 0.78185 0.75347 1.23861 0.93014 1.06302 0.94365 0.87740 0.92155 0.92478 0.86132 0.87547 0.73725 0.90064 0.87018 0.89017 0.89963 0.88325 0.89263 0.88440 0.78184 1.16497 1.16085 0.87468 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.47 101.05 1.06 1.05 16 2 O -0.33 0.27 8.99 -35.23 -0.32 -0.04 16 3 C 0.04 -0.04 0.81 -89.67 -0.07 -0.11 16 4 C 0.44 0.30 2.74 37.16 0.10 0.40 16 5 F -0.18 -0.18 15.20 2.25 0.03 -0.15 16 6 F -0.17 -0.39 17.18 2.25 0.04 -0.35 16 7 F -0.17 -0.13 15.76 2.25 0.04 -0.10 16 8 C -0.16 0.35 6.72 -25.92 -0.17 0.18 16 9 C 0.13 -0.19 4.47 -67.12 -0.30 -0.49 16 10 H 0.11 -0.16 4.17 -51.93 -0.22 -0.37 16 11 N -1.09 1.29 5.69 -4.20 -0.02 1.26 16 12 S 2.70 3.00 5.41 -107.50 -0.58 2.41 16 13 O -0.95 -3.03 14.46 -57.17 -0.83 -3.85 16 14 O -0.95 -2.73 15.10 -57.17 -0.86 -3.59 16 15 C -0.69 -0.44 5.81 -41.20 -0.24 -0.68 16 16 C -0.05 0.00 6.50 -36.00 -0.23 -0.23 16 17 C -0.12 0.14 8.76 36.00 0.32 0.45 16 18 S 0.17 -0.17 23.31 -107.50 -2.51 -2.67 16 19 C -0.17 0.10 6.11 -36.00 -0.22 -0.12 16 20 C -0.09 0.25 8.52 36.01 0.31 0.55 16 21 C -0.08 -0.04 4.63 -106.25 -0.49 -0.53 16 22 C -0.09 -0.09 1.84 36.01 0.07 -0.03 16 23 O -0.53 -0.92 12.53 -35.23 -0.44 -1.36 16 24 Si 0.69 -0.20 27.07 -169.99 -4.60 -4.80 16 25 C -0.14 0.22 7.17 -25.77 -0.18 0.03 16 26 H 0.10 -0.38 8.14 -51.93 -0.42 -0.81 16 27 H 0.06 -0.11 6.12 -51.93 -0.32 -0.43 16 28 H 0.06 -0.21 6.51 -51.93 -0.34 -0.55 16 29 H 0.12 -0.39 7.87 -51.93 -0.41 -0.80 16 30 H 0.11 -0.34 6.31 -51.93 -0.33 -0.67 16 31 H 0.43 -0.99 7.51 -34.47 -0.26 -1.25 16 32 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 33 H 0.11 -0.03 6.88 -51.93 -0.36 -0.39 16 34 H 0.09 -0.19 8.12 -51.93 -0.42 -0.62 16 35 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 36 H 0.10 -0.27 7.98 -51.93 -0.41 -0.68 16 37 H 0.09 -0.38 4.74 -51.93 -0.25 -0.63 16 38 H 0.10 0.14 2.89 -51.93 -0.15 -0.01 16 39 H 0.37 0.11 9.11 45.56 0.42 0.52 16 40 H -0.24 -0.58 7.11 56.52 0.40 -0.18 16 41 H -0.24 0.20 6.48 56.52 0.37 0.57 16 42 H 0.11 -0.22 8.14 -51.93 -0.42 -0.64 16 43 H 0.12 -0.27 6.53 -51.93 -0.34 -0.61 16 LS Contribution 366.12 15.07 5.52 5.52 Total: 0.00 -7.29 366.12 -8.91 -16.20 By element: Atomic # 1 Polarization: -4.64 SS G_CDS: -4.30 Total: -8.94 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -0.07 Total: 0.47 kcal Atomic # 7 Polarization: 1.29 SS G_CDS: -0.02 Total: 1.26 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -2.45 Total: -8.85 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 0.11 Total: -0.60 kcal Atomic # 14 Polarization: -0.20 SS G_CDS: -4.60 Total: -4.80 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -3.09 Total: -0.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -7.29 -8.91 -16.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312456_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.539 kcal (2) G-P(sol) polarization free energy of solvation -7.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds