Wall clock time and date at job start Mon Mar 8 2021 09:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00033 * 2 1 4 4 C 1.52995 * 112.84922 * 75.23587 * 3 2 1 5 5 F 1.39899 * 109.47502 * 289.13701 * 4 3 2 6 6 F 1.39898 * 109.47276 * 49.14186 * 4 3 2 7 7 F 1.39902 * 109.46812 * 169.13833 * 4 3 2 8 8 C 1.53779 * 113.61075 * 304.03747 * 3 2 1 9 9 C 1.53776 * 87.08154 * 270.88654 * 8 3 2 10 10 H 1.09004 * 113.61769 * 219.93776 * 9 8 3 11 11 N 1.46495 * 113.61629 * 89.11891 * 9 8 3 12 12 S 1.65603 * 120.00035 * 143.60550 * 11 9 8 13 13 O 1.42097 * 106.40630 * 308.90517 * 12 11 9 14 14 O 1.42102 * 106.40113 * 175.98667 * 12 11 9 15 15 C 1.76198 * 107.21578 * 62.45080 * 12 11 9 16 16 C 1.33394 * 122.54269 * 91.31340 * 15 12 11 17 17 C 1.50696 * 125.19958 * 0.02562 * 16 15 12 18 18 S 1.75887 * 109.59013 * 179.75016 * 16 15 12 19 19 C 1.75878 * 90.97356 * 0.22754 * 18 16 15 20 20 C 1.50705 * 125.20279 * 180.02562 * 19 18 16 21 21 C 1.33386 * 109.59608 * 359.97438 * 19 18 16 22 22 C 1.50700 * 122.54366 * 180.02562 * 21 19 18 23 23 O 1.42904 * 109.46681 * 71.65806 * 22 21 19 24 24 Si 1.86301 * 109.46819 * 311.66437 * 22 21 19 25 25 C 1.53779 * 87.17732 * 334.52680 * 9 8 3 26 26 H 1.09003 * 109.47205 * 185.38384 * 1 2 3 27 27 H 1.09000 * 109.47366 * 305.38235 * 1 2 3 28 28 H 1.08997 * 109.46910 * 65.38161 * 1 2 3 29 29 H 1.09005 * 113.61219 * 156.33652 * 8 3 2 30 30 H 1.08992 * 113.61656 * 25.43849 * 8 3 2 31 31 H 0.96999 * 120.00248 * 323.61217 * 11 9 8 32 32 H 1.09007 * 109.46973 * 179.72237 * 17 16 15 33 33 H 1.08998 * 109.47366 * 59.72154 * 17 16 15 34 34 H 1.08998 * 109.47403 * 299.72001 * 17 16 15 35 35 H 1.08997 * 109.46998 * 3.20383 * 20 19 18 36 36 H 1.08996 * 109.46944 * 123.20883 * 20 19 18 37 37 H 1.09004 * 109.46899 * 243.21185 * 20 19 18 38 38 H 1.08991 * 109.47571 * 191.66200 * 22 21 19 39 39 H 0.96700 * 113.99685 * 64.56901 * 23 22 21 40 40 H 1.48501 * 109.99827 * 175.00322 * 24 22 21 41 41 H 1.48503 * 110.00048 * 296.31752 * 24 22 21 42 42 H 1.08998 * 113.61613 * 140.01959 * 25 9 8 43 43 H 1.08997 * 113.61528 * 270.93292 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.9236 1.9943 1.3633 5 9 0.5953 2.3478 1.6238 6 9 2.3771 1.1203 2.3571 7 9 2.7195 3.1449 1.3558 8 6 1.5403 2.1889 -1.1676 9 6 2.7129 1.6086 -1.9756 10 1 3.2191 2.3444 -2.6006 11 7 2.3753 0.3818 -2.7015 12 16 3.0266 0.0990 -4.1976 13 8 2.7836 1.2676 -4.9685 14 8 2.5878 -1.1949 -4.5882 15 6 4.7735 -0.0086 -3.9940 16 6 5.3995 -1.1641 -3.7654 17 6 4.7277 -2.5082 -3.6512 18 16 7.1296 -0.8800 -3.6255 19 6 6.8980 0.8438 -3.8864 20 6 7.9979 1.8737 -3.9148 21 6 5.6001 1.1001 -4.0564 22 6 5.0738 2.4906 -4.3026 23 8 5.4331 2.9093 -5.6209 24 14 5.8104 3.6631 -3.0562 25 6 3.4148 1.3555 -0.6309 26 1 -0.3634 -1.0231 0.0964 27 1 -0.3634 0.5950 0.8378 28 1 -0.3633 0.4281 -0.9342 29 1 1.6316 3.2572 -0.9712 30 1 0.5613 1.9117 -1.5584 31 1 1.7702 -0.2649 -2.3059 32 1 5.4796 -3.2759 -3.4679 33 1 4.1999 -2.7306 -4.5785 34 1 4.0176 -2.4905 -2.8243 35 1 8.9625 1.3781 -3.8056 36 1 7.9697 2.4092 -4.8637 37 1 7.8568 2.5785 -3.0953 38 1 3.9883 2.4910 -4.2046 39 1 5.0266 2.3852 -6.3245 40 1 5.3948 5.0557 -3.3615 41 1 5.3714 3.2906 -1.6873 42 1 3.9480 0.4058 -0.5887 43 1 4.0177 2.1963 -0.2880 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17312456_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:18 Heat of formation + Delta-G solvation = -221.353322 kcal Electronic energy + Delta-G solvation = -37472.642242 eV Core-core repulsion = 32132.354155 eV Total energy + Delta-G solvation = -5340.288087 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.066 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.28963 -48.83503 -48.75524 -41.58006 -40.25017 -38.72580 -37.51237 -37.19441 -36.99276 -34.27233 -34.00660 -30.79461 -29.06205 -28.17338 -28.00711 -26.79660 -25.88600 -24.21241 -23.24794 -21.46147 -21.04838 -20.20685 -19.78458 -19.58650 -19.34101 -18.96410 -18.50730 -18.15957 -17.58427 -17.26493 -16.73253 -16.54628 -16.18850 -16.05348 -15.84001 -15.68018 -15.60353 -15.48700 -15.25523 -15.14353 -14.98430 -14.94690 -14.70966 -14.60171 -14.39812 -14.27903 -14.16992 -14.10612 -13.74730 -13.46479 -13.41556 -13.40058 -13.33596 -13.10095 -13.05441 -12.78439 -12.64905 -12.47515 -12.36848 -12.11045 -11.89305 -11.76634 -11.23405 -11.06868 -10.94758 -10.76520 -9.97226 -9.50159 -4.84677 -0.91938 -0.42880 0.41140 0.69775 0.84188 1.31243 1.46507 1.55476 1.77195 1.97590 2.03984 2.45983 2.49986 2.56462 2.72617 3.04811 3.21056 3.24440 3.41289 3.48892 3.65996 3.75618 3.84742 3.91828 4.05904 4.18395 4.21558 4.26913 4.28082 4.33657 4.35658 4.53082 4.55933 4.58344 4.67050 4.68525 4.72920 4.79125 4.86737 4.94482 5.11234 5.12718 5.30876 5.64353 5.80545 6.57039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.341 6.341 3 C 0.043 3.957 4 C 0.436 3.564 5 F -0.184 7.184 6 F -0.184 7.184 7 F -0.176 7.176 8 C -0.161 4.161 9 C 0.127 3.873 10 H 0.112 0.888 11 N -1.085 6.085 12 S 2.714 3.286 13 O -0.974 6.974 14 O -0.969 6.969 15 C -0.694 4.694 16 C -0.057 4.057 17 C -0.121 4.121 18 S 0.192 5.808 19 C -0.169 4.169 20 C -0.094 4.094 21 C -0.094 4.094 22 C -0.099 4.099 23 O -0.538 6.538 24 Si 0.739 3.261 25 C -0.136 4.136 26 H 0.115 0.885 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.431 0.569 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.373 0.627 40 H -0.284 1.284 41 H -0.224 1.224 42 H 0.112 0.888 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -1.505 2.012 4.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.258 6.258 3 C 0.000 4.000 4 C 0.382 3.618 5 F -0.165 7.165 6 F -0.166 7.166 7 F -0.158 7.158 8 C -0.200 4.200 9 C 0.019 3.981 10 H 0.130 0.870 11 N -0.846 5.846 12 S 2.804 3.196 13 O -0.964 6.964 14 O -0.960 6.960 15 C -0.796 4.796 16 C -0.178 4.178 17 C -0.179 4.179 18 S 0.459 5.541 19 C -0.287 4.287 20 C -0.151 4.151 21 C -0.104 4.104 22 C -0.209 4.209 23 O -0.344 6.344 24 Si 0.637 3.363 25 C -0.175 4.175 26 H 0.134 0.866 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.150 0.850 30 H 0.135 0.865 31 H 0.270 0.730 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.221 0.779 40 H -0.210 1.210 41 H -0.148 1.148 42 H 0.130 0.870 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.624 -1.565 2.378 5.430 hybrid contribution -2.689 0.026 -0.178 2.695 sum 1.934 -1.539 2.200 3.309 Atomic orbital electron populations 1.23422 0.78607 1.05547 1.02365 1.88060 1.22136 1.21837 1.93788 1.23961 1.00906 0.87122 0.88021 1.21405 0.73559 0.77540 0.89328 1.93168 1.35671 1.92436 1.95271 1.93195 1.88976 1.69255 1.65130 1.93180 1.74155 1.51661 1.96791 1.24135 1.01427 1.01724 0.92714 1.21594 0.97110 0.86121 0.93260 0.87010 1.55176 1.61374 1.29833 1.38229 1.01110 0.73225 0.72693 0.72536 1.93520 1.84671 1.50039 1.68129 1.93577 1.81124 1.40388 1.80863 1.29273 1.26515 0.98784 1.25028 1.24765 0.98563 0.98325 0.96185 1.21029 1.01381 0.89840 1.05639 1.84354 1.02335 1.01071 1.66343 1.24747 0.98110 0.98643 1.07248 1.20623 0.94633 0.95153 1.04647 1.18550 0.92797 0.94993 1.04074 1.25983 1.03863 0.97740 0.93307 1.86621 1.73878 1.59783 1.14081 0.92629 0.93837 0.74762 0.75073 1.23928 0.92875 1.06880 0.93833 0.86628 0.92845 0.91137 0.85027 0.86539 0.73013 0.88387 0.88172 0.88254 0.88210 0.88405 0.87664 0.89169 0.77850 1.21007 1.14793 0.86996 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 10.47 113.37 1.19 1.21 16 2 O -0.34 0.63 8.99 -148.98 -1.34 -0.71 16 3 C 0.04 -0.09 0.81 -10.18 -0.01 -0.10 16 4 C 0.44 0.60 2.74 71.98 0.20 0.79 16 5 F -0.18 -0.41 15.20 44.97 0.68 0.28 16 6 F -0.18 -0.89 17.18 44.97 0.77 -0.12 16 7 F -0.18 -0.25 15.76 44.97 0.71 0.46 16 8 C -0.16 0.75 6.72 31.12 0.21 0.96 16 9 C 0.13 -0.37 4.47 45.52 0.20 -0.16 16 10 H 0.11 -0.29 4.17 -2.38 -0.01 -0.30 16 11 N -1.08 2.27 5.69 -167.21 -0.95 1.32 16 12 S 2.71 8.37 5.41 -56.49 -0.31 8.06 16 13 O -0.97 -7.53 14.46 -128.00 -1.85 -9.38 16 14 O -0.97 -6.60 15.10 -128.00 -1.93 -8.53 16 15 C -0.69 -1.10 5.81 21.22 0.12 -0.98 16 16 C -0.06 0.02 6.50 24.59 0.16 0.18 16 17 C -0.12 0.29 8.76 71.23 0.62 0.92 16 18 S 0.19 -0.57 23.31 -56.49 -1.32 -1.88 16 19 C -0.17 0.31 6.11 24.59 0.15 0.46 16 20 C -0.09 0.64 8.52 71.24 0.61 1.24 16 21 C -0.09 -0.11 4.63 -20.92 -0.10 -0.20 16 22 C -0.10 -0.27 1.84 71.24 0.13 -0.14 16 23 O -0.54 -2.43 12.53 -148.98 -1.87 -4.30 16 24 Si 0.74 -0.40 27.07 68.60 1.86 1.46 16 25 C -0.14 0.50 7.17 31.21 0.22 0.72 16 26 H 0.12 -0.89 8.14 -2.39 -0.02 -0.91 16 27 H 0.05 -0.19 6.12 -2.39 -0.01 -0.20 16 28 H 0.07 -0.57 6.51 -2.39 -0.02 -0.58 16 29 H 0.13 -0.92 7.87 -2.38 -0.02 -0.93 16 30 H 0.12 -0.80 6.31 -2.39 -0.02 -0.82 16 31 H 0.43 -1.95 7.51 -96.75 -0.73 -2.68 16 32 H 0.10 -0.61 8.14 -2.38 -0.02 -0.63 16 33 H 0.10 0.02 6.88 -2.39 -0.02 0.00 16 34 H 0.10 -0.43 8.12 -2.39 -0.02 -0.44 16 35 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H 0.10 -0.60 7.98 -2.39 -0.02 -0.62 16 37 H 0.11 -1.05 4.74 -2.39 -0.01 -1.06 16 38 H 0.09 0.36 2.89 -2.39 -0.01 0.35 16 39 H 0.37 0.80 9.11 -74.06 -0.67 0.12 16 40 H -0.28 -1.79 7.11 99.48 0.71 -1.09 16 41 H -0.22 0.63 6.48 99.48 0.64 1.27 16 42 H 0.11 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.13 -0.68 6.53 -2.39 -0.02 -0.69 16 Total: 0.00 -17.07 366.12 -2.12 -19.19 By element: Atomic # 1 Polarization: -10.48 SS G_CDS: -0.29 Total: -10.77 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 3.71 Total: 4.91 kcal Atomic # 7 Polarization: 2.27 SS G_CDS: -0.95 Total: 1.32 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -6.99 Total: -22.91 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 2.17 Total: 0.62 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 1.86 Total: 1.46 kcal Atomic # 16 Polarization: 7.80 SS G_CDS: -1.62 Total: 6.18 kcal Total: -17.07 -2.12 -19.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312456_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.164 kcal (2) G-P(sol) polarization free energy of solvation -17.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds