Wall clock time and date at job start Mon Mar 8 2021 09:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00104 * 2 1 4 4 C 1.53005 * 112.90651 * 293.93678 * 3 2 1 5 5 F 1.39902 * 109.46989 * 196.24603 * 4 3 2 6 6 F 1.39902 * 109.46864 * 316.24610 * 4 3 2 7 7 F 1.39894 * 109.47162 * 76.24620 * 4 3 2 8 8 C 1.54047 * 113.61233 * 162.67776 * 3 2 1 9 9 C 1.53775 * 86.98939 * 270.88472 * 8 3 2 10 10 H 1.08996 * 113.61771 * 219.98310 * 9 8 3 11 11 N 1.46508 * 113.61325 * 89.15759 * 9 8 3 12 12 S 1.65606 * 119.99468 * 117.09412 * 11 9 8 13 13 O 1.42102 * 106.39992 * 313.47614 * 12 11 9 14 14 O 1.42095 * 106.39821 * 180.55619 * 12 11 9 15 15 C 1.76199 * 107.21780 * 67.01723 * 12 11 9 16 16 C 1.38213 * 119.99678 * 165.65246 * 15 12 11 17 17 C 1.50696 * 120.00263 * 359.97438 * 16 15 12 18 18 O 1.42895 * 109.47143 * 76.25224 * 17 16 15 19 19 Si 1.86307 * 109.47085 * 196.25645 * 17 16 15 20 20 C 1.38258 * 119.99525 * 179.97438 * 16 15 12 21 21 C 1.38205 * 120.00687 * 359.97438 * 20 16 15 22 22 C 1.38272 * 119.99600 * 359.97438 * 21 20 16 23 23 C 1.38211 * 119.99665 * 0.09419 * 22 21 20 24 24 C 1.53775 * 113.61434 * 65.18824 * 3 2 1 25 25 H 1.08992 * 109.47057 * 185.15326 * 1 2 3 26 26 H 1.09000 * 109.46982 * 305.15052 * 1 2 3 27 27 H 1.08998 * 109.47444 * 65.15152 * 1 2 3 28 28 H 1.09002 * 113.61301 * 156.38120 * 8 3 2 29 29 H 1.08998 * 113.69712 * 25.40676 * 8 3 2 30 30 H 0.97001 * 120.00196 * 297.09387 * 11 9 8 31 31 H 1.09003 * 109.47029 * 316.25041 * 17 16 15 32 32 H 0.96691 * 114.00552 * 305.05244 * 18 17 16 33 33 H 1.48495 * 110.00064 * 59.99922 * 19 17 16 34 34 H 1.48501 * 109.99632 * 181.32022 * 19 17 16 35 35 H 1.08004 * 119.99822 * 179.97438 * 20 16 15 36 36 H 1.07990 * 120.00824 * 179.72227 * 21 20 16 37 37 H 1.07992 * 119.99471 * 180.02562 * 22 21 20 38 38 H 1.08002 * 119.99289 * 179.97438 * 23 22 21 39 39 H 1.09006 * 113.61361 * 334.56776 * 24 3 2 40 40 H 1.08999 * 113.69467 * 203.67634 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.7301 2.0821 -1.2882 5 9 2.6100 3.1659 -1.3800 6 9 1.9120 1.2391 -2.3898 7 9 0.4123 2.5513 -1.2725 8 6 3.4922 1.3210 0.4203 9 6 2.9963 1.4826 1.8669 10 1 3.5920 2.1786 2.4575 11 7 2.7627 0.2093 2.5528 12 16 3.6542 -0.1857 3.8914 13 8 5.0091 0.0955 3.5683 14 8 3.2046 -1.4674 4.3088 15 6 3.2033 0.9403 5.1693 16 6 3.5579 0.6772 6.4790 17 6 4.3295 -0.5731 6.8141 18 8 5.6973 -0.4042 6.4365 19 14 4.2261 -0.8944 8.6463 20 6 3.2045 1.5611 7.4817 21 6 2.4972 2.7080 7.1745 22 6 2.1435 2.9718 5.8641 23 6 2.4955 2.0875 4.8619 24 6 1.7207 2.1087 1.2789 25 1 -0.3633 -1.0234 0.0923 26 1 -0.3633 0.5917 0.8403 27 1 -0.3634 0.4318 -0.9325 28 1 4.0425 2.1853 0.0482 29 1 4.0091 0.3788 0.2385 30 1 2.0858 -0.4022 2.2230 31 1 3.9048 -1.4183 6.2725 32 1 5.8220 -0.1571 5.5101 33 1 2.8086 -1.0719 9.0517 34 1 5.0096 -2.1070 8.9943 35 1 3.4812 1.3553 8.5052 36 1 2.2173 3.3962 7.9582 37 1 1.5912 3.8682 5.6240 38 1 2.2188 2.2934 3.8384 39 1 0.8081 1.8018 1.7900 40 1 1.7869 3.1881 1.1427 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17312456_2726874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:48:22 Heat of formation + Delta-G solvation = -225.828154 kcal Electronic energy + Delta-G solvation = -33566.929307 eV Core-core repulsion = 28448.370168 eV Total energy + Delta-G solvation = -5118.559139 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.078 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.22964 -48.75731 -48.70987 -41.47093 -40.76242 -38.60590 -38.11822 -37.52547 -37.09728 -34.09699 -32.84612 -32.43491 -28.91033 -28.06848 -27.09206 -26.79386 -24.47910 -24.16256 -23.03531 -21.40776 -20.92441 -19.83279 -19.60420 -19.48951 -19.19379 -18.55802 -18.21821 -17.51923 -17.22690 -17.07952 -16.60899 -16.49259 -16.11624 -15.94230 -15.78093 -15.65985 -15.56594 -15.43605 -15.19536 -15.13489 -14.95182 -14.88291 -14.61649 -14.49950 -14.18600 -13.78828 -13.77780 -13.59212 -13.57421 -13.44207 -13.22762 -13.06126 -12.94305 -12.67618 -12.34115 -12.25110 -12.04458 -11.73485 -11.64886 -11.28937 -11.01768 -10.75420 -10.47628 -10.07956 -5.03048 -0.96099 -0.36242 0.10380 1.16532 1.50018 1.54057 1.57466 1.88259 2.09405 2.28302 2.36268 2.56622 2.62334 2.81385 3.13299 3.22373 3.26013 3.31544 3.47807 3.53071 3.67593 3.82781 3.87964 4.05035 4.09573 4.19001 4.24325 4.29503 4.31198 4.41437 4.49322 4.53745 4.65247 4.73301 4.77025 4.83722 4.90009 4.97346 5.15868 5.27801 5.71483 5.74265 5.79240 6.12946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.348 6.348 3 C 0.034 3.966 4 C 0.434 3.566 5 F -0.173 7.173 6 F -0.191 7.191 7 F -0.183 7.183 8 C -0.136 4.136 9 C 0.124 3.876 10 H 0.144 0.856 11 N -1.083 6.083 12 S 2.695 3.305 13 O -0.972 6.972 14 O -0.988 6.988 15 C -0.678 4.678 16 C -0.040 4.040 17 C -0.173 4.173 18 O -0.543 6.543 19 Si 0.839 3.161 20 C -0.133 4.133 21 C -0.055 4.055 22 C -0.128 4.128 23 C -0.039 4.039 24 C -0.154 4.154 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.143 0.857 29 H 0.093 0.907 30 H 0.431 0.569 31 H 0.084 0.916 32 H 0.367 0.633 33 H -0.250 1.250 34 H -0.291 1.291 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.120 0.880 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 8.469 2.908 10.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.266 6.266 3 C -0.008 4.008 4 C 0.379 3.621 5 F -0.155 7.155 6 F -0.172 7.172 7 F -0.164 7.164 8 C -0.175 4.175 9 C 0.016 3.984 10 H 0.162 0.838 11 N -0.846 5.846 12 S 2.787 3.213 13 O -0.962 6.962 14 O -0.978 6.978 15 C -0.767 4.767 16 C -0.042 4.042 17 C -0.277 4.277 18 O -0.352 6.352 19 Si 0.736 3.264 20 C -0.151 4.151 21 C -0.073 4.073 22 C -0.147 4.147 23 C -0.057 4.057 24 C -0.193 4.193 25 H 0.129 0.871 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.160 0.840 29 H 0.111 0.889 30 H 0.270 0.730 31 H 0.102 0.898 32 H 0.218 0.782 33 H -0.175 1.175 34 H -0.218 1.218 35 H 0.179 0.821 36 H 0.190 0.810 37 H 0.189 0.811 38 H 0.183 0.817 39 H 0.138 0.862 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.761 7.032 4.179 9.465 hybrid contribution -1.120 -0.422 -2.411 2.692 sum -5.881 6.609 1.768 9.022 Atomic orbital electron populations 1.23330 0.78658 1.05408 1.02035 1.88080 1.22079 1.22570 1.93864 1.24181 1.00357 0.86360 0.89948 1.21447 0.74230 0.78701 0.87676 1.93181 1.68931 1.56770 1.96607 1.93192 1.94963 1.71296 1.57750 1.93189 1.36945 1.89459 1.96833 1.23901 0.91235 1.06804 0.95595 1.21819 0.98201 0.84469 0.93880 0.83820 1.55046 1.56381 1.29680 1.43456 1.01688 0.73589 0.73063 0.72974 1.93577 1.33726 1.85521 1.83346 1.93570 1.82315 1.39762 1.82132 1.30483 1.16990 1.16501 1.12740 1.19877 0.95228 0.95967 0.93094 1.26780 0.84087 0.96651 1.20222 1.86752 1.22468 1.92621 1.33327 0.92249 0.79128 0.83796 0.71187 1.21476 0.99489 0.94910 0.99211 1.22005 0.91797 0.95148 0.98337 1.21864 0.99699 1.00571 0.92545 1.21418 0.91905 0.90273 1.02128 1.24213 1.00184 1.02747 0.92160 0.87144 0.90511 0.93663 0.83953 0.88881 0.72993 0.89840 0.78234 1.17459 1.21835 0.82134 0.81039 0.81081 0.81726 0.86198 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.30 113.37 1.17 1.16 16 2 O -0.35 0.72 8.92 -148.98 -1.33 -0.61 16 3 C 0.03 -0.16 0.85 -10.18 -0.01 -0.16 16 4 C 0.43 -0.36 2.53 71.98 0.18 -0.18 16 5 F -0.17 0.25 15.82 44.97 0.71 0.96 16 6 F -0.19 -0.87 17.10 44.97 0.77 -0.10 16 7 F -0.18 0.13 15.43 44.97 0.69 0.83 16 8 C -0.14 0.73 7.15 31.21 0.22 0.96 16 9 C 0.12 -1.00 2.67 45.51 0.12 -0.88 16 10 H 0.14 -1.76 7.05 -2.39 -0.02 -1.78 16 11 N -1.08 4.03 5.33 -167.19 -0.89 3.14 16 12 S 2.69 10.50 4.56 -56.49 -0.26 10.24 16 13 O -0.97 -7.92 15.57 -127.85 -1.99 -9.91 16 14 O -0.99 -10.98 15.73 -128.00 -2.01 -13.00 16 15 C -0.68 -0.78 5.78 22.27 0.13 -0.65 16 16 C -0.04 -0.14 5.21 -19.87 -0.10 -0.24 16 17 C -0.17 -1.35 2.10 71.23 0.15 -1.20 16 18 O -0.54 -5.78 12.68 -148.98 -1.89 -7.67 16 19 Si 0.84 1.99 30.19 68.60 2.07 4.06 16 20 C -0.13 0.34 8.66 22.27 0.19 0.54 16 21 C -0.06 0.42 10.05 22.27 0.22 0.64 16 22 C -0.13 1.12 10.05 22.27 0.22 1.35 16 23 C -0.04 0.24 9.08 22.27 0.20 0.44 16 24 C -0.15 1.77 6.17 31.12 0.19 1.96 16 25 H 0.11 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.08 -0.79 6.54 -2.39 -0.02 -0.80 16 27 H 0.04 -0.17 6.73 -2.39 -0.02 -0.18 16 28 H 0.14 -1.24 7.02 -2.39 -0.02 -1.26 16 29 H 0.09 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.43 -2.04 7.53 -96.74 -0.73 -2.77 16 31 H 0.08 0.92 5.50 -2.39 -0.01 0.91 16 32 H 0.37 3.60 6.11 -74.06 -0.45 3.14 16 33 H -0.25 -0.68 7.11 99.48 0.71 0.03 16 34 H -0.29 -2.66 7.11 99.48 0.71 -1.95 16 35 H 0.16 -1.22 5.17 -2.91 -0.02 -1.24 16 36 H 0.17 -2.44 8.06 -2.92 -0.02 -2.46 16 37 H 0.17 -2.65 8.06 -2.91 -0.02 -2.68 16 38 H 0.17 -2.12 4.63 -2.91 -0.01 -2.14 16 39 H 0.12 -1.73 6.66 -2.38 -0.02 -1.74 16 40 H 0.15 -2.34 8.06 -2.39 -0.02 -2.36 16 Total: 0.00 -25.44 339.54 -1.23 -26.67 By element: Atomic # 1 Polarization: -18.36 SS G_CDS: 0.00 Total: -18.36 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 2.89 Total: 3.73 kcal Atomic # 7 Polarization: 4.03 SS G_CDS: -0.89 Total: 3.14 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -7.22 Total: -31.18 kcal Atomic # 9 Polarization: -0.48 SS G_CDS: 2.17 Total: 1.69 kcal Atomic # 14 Polarization: 1.99 SS G_CDS: 2.07 Total: 4.06 kcal Atomic # 16 Polarization: 10.50 SS G_CDS: -0.26 Total: 10.24 kcal Total: -25.44 -1.23 -26.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312456_2726874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.159 kcal (2) G-P(sol) polarization free energy of solvation -25.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds