Wall clock time and date at job start Mon Mar 8 2021 11:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00051 * 2 1 4 4 O 1.20827 * 119.99987 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00373 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.84854 * 48.79979 * 5 3 2 7 7 C 1.53774 * 113.61828 * 179.97438 * 5 3 2 8 8 C 1.53788 * 87.08146 * 140.06625 * 7 5 3 9 9 H 1.08997 * 113.61188 * 89.20514 * 8 7 5 10 10 S 1.81407 * 113.61385 * 220.02060 * 8 7 5 11 11 O 1.42099 * 110.54100 * 66.84563 * 10 8 7 12 12 O 1.42105 * 110.54263 * 290.09660 * 10 8 7 13 13 O 1.52200 * 104.44671 * 178.47156 * 10 8 7 14 14 C 1.35889 * 114.00135 * 75.00030 * 13 10 8 15 15 C 1.38619 * 120.03111 * 270.22840 * 14 13 10 16 16 C 1.38656 * 119.89241 * 180.27504 * 15 14 13 17 17 O 1.35891 * 120.02451 * 179.76866 * 16 15 14 18 18 C 1.42903 * 117.00396 * 359.72783 * 17 16 15 19 19 C 1.38753 * 119.94596 * 359.49650 * 16 15 14 20 20 C 1.50694 * 119.97178 * 180.23064 * 19 16 15 21 21 C 1.38202 * 120.05374 * 0.25072 * 19 16 15 22 22 C 1.38157 * 120.10698 * 0.02562 * 21 19 16 23 23 C 1.50704 * 119.96937 * 179.97438 * 22 21 19 24 24 O 1.42903 * 109.46762 * 254.99874 * 23 22 21 25 25 Si 1.86293 * 109.47098 * 14.99978 * 23 22 21 26 26 C 1.53780 * 87.17121 * 334.60959 * 8 7 5 27 27 H 1.08999 * 109.47770 * 300.00023 * 1 2 3 28 28 H 1.08997 * 109.47356 * 60.00246 * 1 2 3 29 29 H 1.09000 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.09002 * 113.61597 * 25.52237 * 7 5 3 31 31 H 1.09000 * 113.61814 * 254.61149 * 7 5 3 32 32 H 1.08001 * 120.04888 * 0.02636 * 15 14 13 33 33 H 1.09002 * 109.47382 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.46938 * 59.99709 * 18 17 16 35 35 H 1.09004 * 109.46926 * 299.99830 * 18 17 16 36 36 H 1.08998 * 109.47342 * 90.00041 * 20 19 16 37 37 H 1.08998 * 109.46893 * 209.99945 * 20 19 16 38 38 H 1.09000 * 109.47071 * 329.99623 * 20 19 16 39 39 H 1.07993 * 119.94752 * 179.97438 * 21 19 16 40 40 H 1.08993 * 109.47083 * 134.99953 * 23 22 21 41 41 H 0.96700 * 114.00137 * 60.00436 * 24 23 22 42 42 H 1.48498 * 110.00170 * 58.68065 * 25 23 22 43 43 H 1.48507 * 110.00198 * 180.02562 * 25 23 22 44 44 H 1.08998 * 113.61373 * 139.93834 * 26 8 7 45 45 H 1.08997 * 113.61608 * 270.84011 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0239 0.6362 -0.7549 7 6 4.1076 2.7142 -0.0001 8 6 5.1820 2.2269 0.9865 9 1 6.0818 1.8496 0.5009 10 16 5.5411 3.4111 2.3130 11 8 4.4176 3.5544 3.1711 12 8 6.2181 4.5486 1.7961 13 8 6.5841 2.7125 3.1735 14 6 7.8266 2.6861 2.6238 15 6 8.2009 1.6316 1.8055 16 6 9.4713 1.6046 1.2507 17 8 9.8426 0.5699 0.4519 18 6 8.8756 -0.4589 0.2313 19 6 10.3611 2.6379 1.5071 20 6 11.7402 2.6118 0.9002 21 6 9.9839 3.6908 2.3190 22 6 8.7205 3.7170 2.8776 23 6 8.3126 4.8663 3.7630 24 8 8.3165 4.4412 5.1273 25 14 9.5146 6.2732 3.5474 26 6 4.1944 1.1221 1.3978 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.4177 3.4405 0.4294 31 1 4.5099 3.0290 -0.9630 32 1 7.5053 0.8303 1.6038 33 1 9.2991 -1.2216 -0.4222 34 1 7.9897 -0.0304 -0.2373 35 1 8.6003 -0.9093 1.1850 36 1 11.7208 3.1125 -0.0677 37 1 12.4379 3.1259 1.5613 38 1 12.0596 1.5780 0.7682 39 1 10.6780 4.4938 2.5178 40 1 7.3114 5.1986 3.4888 41 1 9.1774 4.1315 5.4404 42 1 9.5435 6.7034 2.1264 43 1 9.1237 7.4128 4.4157 44 1 4.6665 0.1534 1.5618 45 1 3.5282 1.4123 2.2102 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17312814_13206342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:35:01 Heat of formation + Delta-G solvation = -186.899016 kcal Electronic energy + Delta-G solvation = -34017.116848 eV Core-core repulsion = 29289.760924 eV Total energy + Delta-G solvation = -4727.355924 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63861 -41.96352 -40.84619 -39.70996 -38.87456 -38.31860 -37.44011 -37.39020 -37.20011 -33.61194 -32.34531 -29.99719 -29.00291 -28.06310 -27.83689 -27.35662 -26.49868 -24.08579 -23.28555 -22.89722 -21.65734 -20.99011 -19.98617 -19.47501 -18.98185 -18.64592 -18.20064 -18.09573 -17.58243 -17.42293 -17.13901 -17.06943 -16.84942 -16.44101 -15.96179 -15.83434 -15.67784 -15.23508 -14.86461 -14.78925 -14.67687 -14.54736 -14.19153 -14.11465 -13.97232 -13.89292 -13.69238 -13.55629 -13.31336 -13.26065 -13.18267 -13.17679 -13.08999 -12.96823 -12.86153 -12.53264 -12.31504 -12.15058 -12.00509 -11.92945 -11.86374 -11.71795 -11.33917 -10.44461 -10.22307 -9.41850 -5.05080 -1.21832 -0.21776 -0.07869 0.86036 1.03572 1.26688 1.56721 1.69723 1.92422 2.05046 2.11622 2.34160 2.46647 2.69978 2.93978 2.98081 3.26171 3.34271 3.35391 3.48089 3.53912 3.69561 3.73285 3.82275 3.89696 3.91896 3.94412 4.10231 4.10975 4.15426 4.16905 4.20138 4.29765 4.31010 4.34944 4.40981 4.50796 4.55031 4.60187 4.62528 4.67476 4.70275 4.92429 5.01787 5.11275 5.27520 5.34827 5.97604 6.59911 6.60588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.497 6.497 5 C -0.095 4.095 6 H 0.138 0.862 7 C -0.086 4.086 8 C -0.655 4.655 9 H 0.160 0.840 10 S 2.594 3.406 11 O -0.912 6.912 12 O -0.944 6.944 13 O -0.649 6.649 14 C 0.122 3.878 15 C -0.221 4.221 16 C 0.151 3.849 17 O -0.301 6.301 18 C 0.019 3.981 19 C -0.087 4.087 20 C -0.113 4.113 21 C -0.063 4.063 22 C -0.118 4.118 23 C -0.085 4.085 24 O -0.532 6.532 25 Si 0.691 3.309 26 C -0.092 4.092 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.152 0.848 40 H 0.121 0.879 41 H 0.378 0.622 42 H -0.247 1.247 43 H -0.248 1.248 44 H 0.105 0.895 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 -6.617 -3.641 9.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.384 6.384 5 C -0.115 4.115 6 H 0.155 0.845 7 C -0.125 4.125 8 C -0.761 4.761 9 H 0.178 0.822 10 S 2.689 3.311 11 O -0.910 6.910 12 O -0.942 6.942 13 O -0.607 6.607 14 C 0.080 3.920 15 C -0.242 4.242 16 C 0.105 3.895 17 O -0.214 6.214 18 C -0.076 4.076 19 C -0.089 4.089 20 C -0.169 4.169 21 C -0.080 4.080 22 C -0.121 4.121 23 C -0.194 4.194 24 O -0.337 6.337 25 Si 0.591 3.409 26 C -0.130 4.130 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.165 0.835 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.169 0.831 40 H 0.138 0.862 41 H 0.225 0.775 42 H -0.171 1.171 43 H -0.173 1.173 44 H 0.124 0.876 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.338 -4.860 -3.432 7.993 hybrid contribution -1.485 -1.040 -0.594 1.908 sum 3.853 -5.900 -4.025 8.115 Atomic orbital electron populations 1.23368 0.75594 1.04169 1.02946 1.86495 1.23998 1.32951 1.83750 1.23414 0.91443 0.81712 0.72549 1.90717 1.66803 1.36382 1.44496 1.22443 0.88042 1.00054 1.00955 0.84455 1.22622 0.93905 0.96006 0.99932 1.32295 1.08080 1.16662 1.19096 0.82236 1.05661 0.74636 0.75437 0.75357 1.93682 1.50831 1.84584 1.61926 1.93635 1.71270 1.47984 1.81343 1.85735 1.27988 1.84953 1.62072 1.17405 0.81608 0.96188 0.96783 1.21324 0.98495 1.00703 1.03662 1.18464 0.91307 0.88604 0.91120 1.86152 1.41490 1.30581 1.63164 1.23243 0.92663 0.89485 1.02218 1.19476 0.97195 0.92713 0.99514 1.20752 0.91085 1.04015 1.01085 1.20692 0.94365 0.97461 0.95529 1.20408 0.94179 0.96756 1.00744 1.25362 1.09919 1.01323 0.82837 1.86593 1.37167 1.86469 1.23468 0.95519 0.85737 0.77562 0.82083 1.22694 0.95516 0.98306 0.96486 0.91517 0.91606 0.87682 0.87219 0.87543 0.83451 0.87283 0.92419 0.92003 0.90335 0.90506 0.90351 0.83076 0.86156 0.77483 1.17106 1.17292 0.87633 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.33 10.56 -39.24 -0.41 -0.75 16 3 C 0.47 0.79 7.49 36.00 0.27 1.06 16 4 O -0.50 -2.43 15.65 -18.75 -0.29 -2.72 16 5 C -0.10 0.15 4.26 -90.87 -0.39 -0.24 16 6 H 0.14 -0.62 8.14 -51.93 -0.42 -1.04 16 7 C -0.09 0.07 7.00 -25.92 -0.18 -0.12 16 8 C -0.66 0.83 3.97 -25.92 -0.10 0.73 16 9 H 0.16 -0.68 6.17 -51.93 -0.32 -1.00 16 10 S 2.59 8.56 4.88 -107.50 -0.52 8.04 16 11 O -0.91 -6.07 17.31 -67.04 -1.16 -7.23 16 12 O -0.94 -4.74 14.24 -67.04 -0.95 -5.69 16 13 O -0.65 -2.04 9.47 -51.72 -0.49 -2.53 16 14 C 0.12 0.23 4.78 -39.23 -0.19 0.05 16 15 C -0.22 0.15 7.48 -39.29 -0.29 -0.15 16 16 C 0.15 -0.10 6.66 -39.24 -0.26 -0.36 16 17 O -0.30 0.44 9.53 -19.40 -0.18 0.25 16 18 C 0.02 -0.08 9.81 101.05 0.99 0.91 16 19 C -0.09 0.09 5.89 -104.45 -0.62 -0.53 16 20 C -0.11 0.33 9.79 36.00 0.35 0.68 16 21 C -0.06 0.06 8.30 -39.62 -0.33 -0.27 16 22 C -0.12 -0.20 4.68 -104.44 -0.49 -0.69 16 23 C -0.08 -0.24 2.23 36.01 0.08 -0.16 16 24 O -0.53 -1.31 12.88 -35.23 -0.45 -1.77 16 25 Si 0.69 0.24 29.91 -169.99 -5.08 -4.85 16 26 C -0.09 0.17 7.21 -25.83 -0.19 -0.02 16 27 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 28 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 29 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 30 H 0.11 0.09 7.39 -51.93 -0.38 -0.29 16 31 H 0.11 -0.30 8.14 -51.93 -0.42 -0.72 16 32 H 0.15 -0.54 5.50 -52.49 -0.29 -0.83 16 33 H 0.11 -0.64 8.14 -51.93 -0.42 -1.06 16 34 H 0.06 -0.34 7.65 -51.93 -0.40 -0.73 16 35 H 0.06 -0.32 7.67 -51.93 -0.40 -0.72 16 36 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 37 H 0.08 -0.35 8.08 -51.93 -0.42 -0.77 16 38 H 0.08 -0.20 7.53 -51.93 -0.39 -0.59 16 39 H 0.15 -0.58 5.12 -52.49 -0.27 -0.85 16 40 H 0.12 0.63 5.42 -51.93 -0.28 0.35 16 41 H 0.38 -0.97 8.70 45.56 0.40 -0.57 16 42 H -0.25 -0.60 7.11 56.52 0.40 -0.20 16 43 H -0.25 -0.83 7.11 56.52 0.40 -0.43 16 44 H 0.11 -0.50 8.14 -51.93 -0.42 -0.92 16 45 H 0.11 -0.04 7.41 -51.93 -0.39 -0.43 16 LS Contribution 380.54 15.07 5.73 5.73 Total: 0.00 -12.92 380.54 -9.82 -22.74 By element: Atomic # 1 Polarization: -7.44 SS G_CDS: -5.72 Total: -13.16 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.27 Total: 1.93 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -3.95 Total: -20.44 kcal Atomic # 14 Polarization: 0.24 SS G_CDS: -5.08 Total: -4.85 kcal Atomic # 16 Polarization: 8.56 SS G_CDS: -0.52 Total: 8.04 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -12.92 -9.82 -22.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312814_13206342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.163 kcal (2) G-P(sol) polarization free energy of solvation -12.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds