Wall clock time and date at job start Mon Mar 8 2021 11:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00051 * 2 1 4 4 O 1.20827 * 119.99987 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00373 * 179.97438 * 3 2 1 6 6 H 1.09002 * 112.84854 * 48.79979 * 5 3 2 7 7 C 1.53774 * 113.61828 * 179.97438 * 5 3 2 8 8 C 1.53788 * 87.08146 * 140.06625 * 7 5 3 9 9 H 1.08997 * 113.61188 * 89.20514 * 8 7 5 10 10 S 1.81407 * 113.61385 * 220.02060 * 8 7 5 11 11 O 1.42099 * 110.54100 * 66.84563 * 10 8 7 12 12 O 1.42105 * 110.54263 * 290.09660 * 10 8 7 13 13 O 1.52200 * 104.44671 * 178.47156 * 10 8 7 14 14 C 1.35889 * 114.00135 * 75.00030 * 13 10 8 15 15 C 1.38619 * 120.03111 * 270.22840 * 14 13 10 16 16 C 1.38656 * 119.89241 * 180.27504 * 15 14 13 17 17 O 1.35891 * 120.02451 * 179.76866 * 16 15 14 18 18 C 1.42903 * 117.00396 * 359.72783 * 17 16 15 19 19 C 1.38753 * 119.94596 * 359.49650 * 16 15 14 20 20 C 1.50694 * 119.97178 * 180.23064 * 19 16 15 21 21 C 1.38202 * 120.05374 * 0.25072 * 19 16 15 22 22 C 1.38157 * 120.10698 * 0.02562 * 21 19 16 23 23 C 1.50704 * 119.96937 * 179.97438 * 22 21 19 24 24 O 1.42903 * 109.46762 * 254.99874 * 23 22 21 25 25 Si 1.86293 * 109.47098 * 14.99978 * 23 22 21 26 26 C 1.53780 * 87.17121 * 334.60959 * 8 7 5 27 27 H 1.08999 * 109.47770 * 300.00023 * 1 2 3 28 28 H 1.08997 * 109.47356 * 60.00246 * 1 2 3 29 29 H 1.09000 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.09002 * 113.61597 * 25.52237 * 7 5 3 31 31 H 1.09000 * 113.61814 * 254.61149 * 7 5 3 32 32 H 1.08001 * 120.04888 * 0.02636 * 15 14 13 33 33 H 1.09002 * 109.47382 * 179.97438 * 18 17 16 34 34 H 1.09001 * 109.46938 * 59.99709 * 18 17 16 35 35 H 1.09004 * 109.46926 * 299.99830 * 18 17 16 36 36 H 1.08998 * 109.47342 * 90.00041 * 20 19 16 37 37 H 1.08998 * 109.46893 * 209.99945 * 20 19 16 38 38 H 1.09000 * 109.47071 * 329.99623 * 20 19 16 39 39 H 1.07993 * 119.94752 * 179.97438 * 21 19 16 40 40 H 1.08993 * 109.47083 * 134.99953 * 23 22 21 41 41 H 0.96700 * 114.00137 * 60.00436 * 24 23 22 42 42 H 1.48498 * 110.00170 * 58.68065 * 25 23 22 43 43 H 1.48507 * 110.00198 * 180.02562 * 25 23 22 44 44 H 1.08998 * 113.61373 * 139.93834 * 26 8 7 45 45 H 1.08997 * 113.61608 * 270.84011 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0239 0.6362 -0.7549 7 6 4.1076 2.7142 -0.0001 8 6 5.1820 2.2269 0.9865 9 1 6.0818 1.8496 0.5009 10 16 5.5411 3.4111 2.3130 11 8 4.4176 3.5544 3.1711 12 8 6.2181 4.5486 1.7961 13 8 6.5841 2.7125 3.1735 14 6 7.8266 2.6861 2.6238 15 6 8.2009 1.6316 1.8055 16 6 9.4713 1.6046 1.2507 17 8 9.8426 0.5699 0.4519 18 6 8.8756 -0.4589 0.2313 19 6 10.3611 2.6379 1.5071 20 6 11.7402 2.6118 0.9002 21 6 9.9839 3.6908 2.3190 22 6 8.7205 3.7170 2.8776 23 6 8.3126 4.8663 3.7630 24 8 8.3165 4.4412 5.1273 25 14 9.5146 6.2732 3.5474 26 6 4.1944 1.1221 1.3978 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.4177 3.4405 0.4294 31 1 4.5099 3.0290 -0.9630 32 1 7.5053 0.8303 1.6038 33 1 9.2991 -1.2216 -0.4222 34 1 7.9897 -0.0304 -0.2373 35 1 8.6003 -0.9093 1.1850 36 1 11.7208 3.1125 -0.0677 37 1 12.4379 3.1259 1.5613 38 1 12.0596 1.5780 0.7682 39 1 10.6780 4.4938 2.5178 40 1 7.3114 5.1986 3.4888 41 1 9.1774 4.1315 5.4404 42 1 9.5435 6.7034 2.1264 43 1 9.1237 7.4128 4.4157 44 1 4.6665 0.1534 1.5618 45 1 3.5282 1.4123 2.2102 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17312814_13206342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:35:00 Heat of formation + Delta-G solvation = -192.146523 kcal Electronic energy + Delta-G solvation = -34017.344397 eV Core-core repulsion = 29289.760924 eV Total energy + Delta-G solvation = -4727.583472 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.110 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.64464 -42.01814 -40.74516 -39.68995 -38.86917 -38.57840 -37.60872 -37.53318 -37.34081 -33.48972 -32.28512 -29.98348 -28.66540 -27.94514 -27.77081 -27.24670 -26.50339 -24.03181 -23.26365 -22.94015 -21.65441 -20.93203 -20.06239 -19.54220 -19.06713 -18.68672 -18.27028 -18.10200 -17.61117 -17.45083 -17.12504 -16.85829 -16.76587 -16.43546 -16.08434 -15.91907 -15.52315 -15.26195 -14.84593 -14.73583 -14.60138 -14.50357 -14.21268 -14.16870 -14.02830 -13.91198 -13.69878 -13.55539 -13.53339 -13.45714 -13.13085 -13.05561 -12.89890 -12.84940 -12.74696 -12.32268 -12.27757 -12.04725 -12.01169 -11.94845 -11.92568 -11.71937 -11.41442 -10.56323 -10.12184 -9.31467 -5.13917 -1.34791 -0.17378 -0.01017 0.75422 0.94749 1.16929 1.59453 1.60314 1.93959 2.16271 2.21202 2.28712 2.42682 2.71040 2.88794 3.08218 3.34745 3.40802 3.47019 3.56341 3.60556 3.73345 3.79158 3.95079 4.11364 4.21320 4.23080 4.23855 4.25071 4.28880 4.30286 4.37417 4.42530 4.51402 4.57394 4.59733 4.65166 4.71017 4.71598 4.83108 4.85563 4.92906 5.00655 5.19119 5.23490 5.31357 5.53223 6.20329 6.52805 6.70878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.085 4.085 6 H 0.183 0.817 7 C -0.102 4.102 8 C -0.622 4.622 9 H 0.201 0.799 10 S 2.578 3.422 11 O -0.967 6.967 12 O -0.974 6.974 13 O -0.658 6.658 14 C 0.092 3.908 15 C -0.216 4.216 16 C 0.149 3.851 17 O -0.310 6.310 18 C 0.003 3.997 19 C -0.089 4.089 20 C -0.113 4.113 21 C -0.062 4.062 22 C -0.139 4.139 23 C -0.110 4.110 24 O -0.554 6.554 25 Si 0.803 3.197 26 C -0.097 4.097 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.133 0.867 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.178 0.822 33 H 0.122 0.878 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.177 0.823 40 H 0.086 0.914 41 H 0.398 0.602 42 H -0.272 1.272 43 H -0.295 1.295 44 H 0.148 0.852 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 -9.240 -5.540 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.104 4.104 6 H 0.200 0.800 7 C -0.141 4.141 8 C -0.732 4.732 9 H 0.218 0.782 10 S 2.679 3.321 11 O -0.965 6.965 12 O -0.972 6.972 13 O -0.617 6.617 14 C 0.051 3.949 15 C -0.237 4.237 16 C 0.103 3.897 17 O -0.223 6.223 18 C -0.091 4.091 19 C -0.091 4.091 20 C -0.170 4.170 21 C -0.080 4.080 22 C -0.142 4.142 23 C -0.217 4.217 24 O -0.362 6.362 25 Si 0.705 3.295 26 C -0.135 4.135 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.195 0.805 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.194 0.806 40 H 0.104 0.896 41 H 0.248 0.752 42 H -0.198 1.198 43 H -0.223 1.223 44 H 0.166 0.834 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.465 -7.507 -5.284 11.833 hybrid contribution -2.185 -0.319 -0.044 2.208 sum 5.280 -7.826 -5.328 10.840 Atomic orbital electron populations 1.23566 0.74979 1.05838 1.02422 1.86497 1.24744 1.32518 1.83329 1.24138 0.92793 0.81255 0.71188 1.90705 1.68005 1.37731 1.46553 1.22645 0.85793 0.99858 1.02104 0.80020 1.22791 0.93799 0.96524 1.00968 1.32092 1.09684 1.14948 1.16498 0.78227 1.05862 0.73779 0.76334 0.76076 1.93606 1.52581 1.85911 1.64376 1.93583 1.71495 1.50411 1.81728 1.85706 1.28691 1.84624 1.62636 1.17812 0.81139 0.97593 0.98396 1.21547 0.99189 1.00447 1.02500 1.18609 0.91212 0.88953 0.90962 1.86159 1.42671 1.30764 1.62680 1.23586 0.93107 0.89196 1.03227 1.19794 0.98064 0.92377 0.98865 1.20829 0.90264 1.04272 1.01607 1.20919 0.93702 0.98322 0.95008 1.20493 0.95496 0.96645 1.01555 1.25673 1.09206 1.03640 0.83216 1.86531 1.39185 1.86790 1.23701 0.94426 0.83333 0.73455 0.78237 1.22863 0.95021 0.99803 0.95786 0.92413 0.91872 0.84908 0.89885 0.84969 0.80515 0.86028 0.90459 0.91187 0.89854 0.88661 0.90502 0.80590 0.89626 0.75209 1.19825 1.22322 0.83440 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.46 10.56 -51.35 -0.54 -1.01 16 3 C 0.46 1.60 7.49 71.23 0.53 2.14 16 4 O -0.54 -6.25 15.65 21.96 0.34 -5.91 16 5 C -0.08 0.41 4.26 -10.96 -0.05 0.37 16 6 H 0.18 -2.49 8.14 -2.39 -0.02 -2.50 16 7 C -0.10 0.18 7.00 31.12 0.22 0.40 16 8 C -0.62 2.12 3.97 31.12 0.12 2.24 16 9 H 0.20 -2.36 6.17 -2.39 -0.01 -2.37 16 10 S 2.58 23.18 4.88 -56.49 -0.28 22.90 16 11 O -0.97 -17.00 17.31 -118.57 -2.05 -19.05 16 12 O -0.97 -12.75 14.24 -118.57 -1.69 -14.43 16 13 O -0.66 -5.36 9.47 -61.40 -0.58 -5.94 16 14 C 0.09 0.40 4.78 22.49 0.11 0.51 16 15 C -0.22 0.62 7.48 22.46 0.17 0.78 16 16 C 0.15 -0.47 6.66 22.49 0.15 -0.32 16 17 O -0.31 1.66 9.53 -92.32 -0.88 0.78 16 18 C 0.00 -0.03 9.81 113.37 1.11 1.08 16 19 C -0.09 0.31 5.89 -19.75 -0.12 0.19 16 20 C -0.11 0.88 9.79 71.23 0.70 1.58 16 21 C -0.06 0.15 8.30 22.24 0.18 0.33 16 22 C -0.14 -0.59 4.68 -19.75 -0.09 -0.68 16 23 C -0.11 -0.86 2.23 71.24 0.16 -0.70 16 24 O -0.55 -3.98 12.88 -148.98 -1.92 -5.90 16 25 Si 0.80 1.37 29.91 68.60 2.05 3.43 16 26 C -0.10 0.47 7.21 31.18 0.22 0.70 16 27 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 28 H 0.06 -0.05 8.13 -2.39 -0.02 -0.07 16 29 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.08 0.34 7.39 -2.39 -0.02 0.33 16 31 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H 0.18 -1.84 5.50 -2.91 -0.02 -1.86 16 33 H 0.12 -1.79 8.14 -2.39 -0.02 -1.81 16 34 H 0.08 -1.23 7.65 -2.39 -0.02 -1.25 16 35 H 0.07 -0.95 7.67 -2.38 -0.02 -0.97 16 36 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.09 -1.09 8.08 -2.39 -0.02 -1.11 16 38 H 0.08 -0.54 7.53 -2.39 -0.02 -0.56 16 39 H 0.18 -1.57 5.12 -2.91 -0.01 -1.58 16 40 H 0.09 1.25 5.42 -2.39 -0.01 1.24 16 41 H 0.40 -1.53 8.70 -74.06 -0.64 -2.17 16 42 H -0.27 -1.50 7.11 99.48 0.71 -0.80 16 43 H -0.30 -2.66 7.11 99.48 0.71 -1.95 16 44 H 0.15 -1.95 8.14 -2.39 -0.02 -1.96 16 45 H 0.09 0.05 7.41 -2.39 -0.02 0.03 16 Total: 0.00 -36.92 380.54 -0.48 -37.40 By element: Atomic # 1 Polarization: -22.49 SS G_CDS: 0.45 Total: -22.04 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 4.62 Total: 9.78 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -7.32 Total: -51.47 kcal Atomic # 14 Polarization: 1.37 SS G_CDS: 2.05 Total: 3.43 kcal Atomic # 16 Polarization: 23.18 SS G_CDS: -0.28 Total: 22.90 kcal Total: -36.92 -0.48 -37.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17312814_13206342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.746 kcal (2) G-P(sol) polarization free energy of solvation -36.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds