Wall clock time and date at job start Mon Mar 8 2021 10:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 H 1.00901 * 109.47444 * 2 1 4 4 C 1.46901 * 109.47289 * 120.00162 * 2 1 3 5 5 C 1.46901 * 109.47352 * 240.00338 * 2 1 3 6 6 C 1.53002 * 109.47241 * 64.99607 * 5 2 1 7 7 H 1.08992 * 109.47128 * 305.00551 * 6 5 2 8 8 C 1.53009 * 109.46695 * 65.00353 * 6 5 2 9 9 C 1.52994 * 109.46872 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47463 * 299.99888 * 9 8 6 11 11 H 1.09000 * 109.47091 * 300.00283 * 10 9 8 12 12 N 1.46498 * 109.47112 * 179.97438 * 10 9 8 13 13 S 1.65605 * 119.99580 * 95.00517 * 12 10 9 14 14 O 1.42099 * 106.40070 * 311.45578 * 13 12 10 15 15 O 1.42104 * 106.40020 * 178.53841 * 13 12 10 16 16 C 1.76199 * 107.22002 * 64.99906 * 13 12 10 17 17 C 1.38234 * 120.00116 * 89.99719 * 16 13 12 18 18 C 1.38230 * 119.99880 * 179.97438 * 17 16 13 19 19 C 1.38235 * 120.00326 * 359.97438 * 18 17 16 20 20 C 1.50702 * 120.00236 * 179.72466 * 19 18 17 21 21 O 1.42890 * 109.47183 * 64.99909 * 20 19 18 22 22 Si 1.86305 * 109.47009 * 185.00201 * 20 19 18 23 23 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 24 24 C 1.38234 * 119.99639 * 269.97699 * 16 13 12 25 25 C 1.53006 * 109.46636 * 60.00244 * 10 9 8 26 26 C 1.53000 * 109.46973 * 299.99531 * 25 10 9 27 27 H 1.09000 * 109.47328 * 59.99861 * 1 2 3 28 28 H 1.09001 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47393 * 300.00184 * 1 2 3 30 30 H 1.09004 * 109.47303 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47336 * 300.00309 * 4 2 1 32 32 H 1.09001 * 109.46860 * 60.00009 * 4 2 1 33 33 H 1.08997 * 109.46888 * 304.99906 * 5 2 1 34 34 H 1.09004 * 109.47642 * 185.00439 * 5 2 1 35 35 H 1.08993 * 109.47002 * 300.00181 * 8 6 5 36 36 H 1.09005 * 109.46856 * 60.00307 * 8 6 5 37 37 H 1.09003 * 109.47188 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47198 * 60.00106 * 9 8 6 39 39 H 0.96997 * 120.00645 * 275.00336 * 12 10 9 40 40 H 1.08001 * 119.99769 * 359.97438 * 17 16 13 41 41 H 1.08000 * 120.00376 * 180.02562 * 18 17 16 42 42 H 1.09002 * 109.46580 * 304.99652 * 20 19 18 43 43 H 0.96700 * 114.00885 * 60.00120 * 21 20 19 44 44 H 1.48495 * 110.00149 * 58.67619 * 22 20 19 45 45 H 1.48501 * 109.99686 * 180.02562 * 22 20 19 46 46 H 1.08001 * 120.00279 * 180.02562 * 23 19 18 47 47 H 1.07996 * 120.00508 * 359.97438 * 24 16 13 48 48 H 1.09000 * 109.47349 * 60.00197 * 25 10 9 49 49 H 1.09003 * 109.46649 * 179.97438 * 25 10 9 50 50 H 1.09002 * 109.46866 * 179.97438 * 26 25 10 51 51 H 1.08992 * 109.47339 * 300.00378 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9586 -0.6925 1.1994 5 6 1.9586 -0.6924 -1.1995 6 6 1.5538 0.0978 -2.4455 7 1 0.4749 0.2525 -2.4430 8 6 2.2635 1.4533 -2.4426 9 6 1.8592 2.2432 -3.6889 10 6 2.2599 1.4606 -4.9411 11 1 3.3388 1.3058 -4.9431 12 7 1.8722 2.2167 -6.1345 13 16 2.9712 3.2048 -6.8818 14 8 3.5604 3.9957 -5.8588 15 8 2.3091 3.7605 -8.0097 16 6 4.2529 2.1746 -7.5148 17 6 4.1563 1.6579 -8.7933 18 6 5.1621 0.8502 -9.2900 19 6 6.2647 0.5596 -8.5086 20 6 7.3583 -0.3260 -9.0479 21 8 7.9925 0.3198 -10.1535 22 14 8.6154 -0.6450 -7.7103 23 6 6.3618 1.0772 -7.2305 24 6 5.3551 1.8836 -6.7330 25 6 1.5501 0.1051 -4.9440 26 6 1.9545 -0.6849 -3.6977 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.0487 -0.6929 1.1992 31 1 1.5953 -0.1788 2.0894 32 1 1.5953 -1.7202 1.1993 33 1 1.5240 -1.6909 -1.2454 34 1 3.0450 -0.7707 -1.1558 35 1 1.9785 2.0107 -1.5504 36 1 3.3425 1.2985 -2.4451 37 1 2.3644 3.2091 -3.6867 38 1 0.7803 2.3980 -3.6869 39 1 0.9719 2.1387 -6.4869 40 1 3.2951 1.8852 -9.4040 41 1 5.0870 0.4467 -10.2890 42 1 6.9299 -1.2727 -9.3770 43 1 8.3967 1.1703 -9.9333 44 1 7.9619 -1.2876 -6.5419 45 1 9.6995 -1.5168 -8.2298 46 1 7.2234 0.8506 -6.6200 47 1 5.4309 2.2879 -5.7345 48 1 0.4712 0.2598 -4.9419 49 1 1.8352 -0.4523 -5.8363 50 1 1.4486 -1.6504 -3.6995 51 1 3.0334 -0.8397 -3.6997 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17509432_13421422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:06:15 Heat of formation + Delta-G solvation = 14.726772 kcal Electronic energy + Delta-G solvation = -31052.232739 eV Core-core repulsion = 26969.916837 eV Total energy + Delta-G solvation = -4082.315902 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.13326 -40.74582 -39.58498 -38.42606 -37.76895 -37.07951 -35.60623 -33.07770 -32.26717 -31.79805 -31.37024 -29.37669 -27.42198 -27.28669 -25.35019 -24.16193 -23.65755 -23.05330 -22.53360 -21.16989 -20.52114 -19.25286 -19.22896 -18.67855 -18.25079 -17.74243 -17.48397 -17.19795 -16.85520 -16.58109 -16.15768 -15.89527 -15.69101 -15.45790 -15.26237 -15.01743 -14.82886 -14.53268 -14.29762 -14.08855 -14.04414 -13.85524 -13.70206 -13.67183 -13.40188 -13.30208 -13.27842 -13.17393 -13.13755 -13.08675 -12.93596 -12.70565 -12.47544 -12.10356 -12.08503 -12.06392 -11.90121 -11.69943 -11.51563 -11.21804 -10.66366 -10.49984 -10.36933 -10.21229 -5.05362 -0.80032 -0.44507 0.12237 1.05601 1.19458 1.53264 1.85034 1.93259 2.27264 2.64694 2.91107 3.02389 3.15446 3.26722 3.35475 3.47719 3.57001 3.58311 3.71171 3.76162 3.76746 3.82203 4.09851 4.13311 4.13950 4.20033 4.22027 4.25750 4.30173 4.32758 4.35726 4.38779 4.40572 4.53160 4.53464 4.61007 4.67598 4.71374 4.77104 4.80903 4.85775 4.86764 4.88962 4.92698 4.94837 5.13026 5.19934 5.20595 5.23560 5.24500 5.38672 5.51091 5.63629 5.97740 6.62086 Molecular weight = 356.17amu Principal moments of inertia in cm(-1) A = 0.010781 B = 0.003158 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.580158 B = 8865.451988 C =10646.630773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.374 5.374 3 H 0.433 0.567 4 C -0.047 4.047 5 C 0.001 3.999 6 C -0.111 4.111 7 H 0.109 0.891 8 C -0.127 4.127 9 C -0.146 4.146 10 C 0.140 3.860 11 H 0.090 0.910 12 N -1.104 6.104 13 S 2.706 3.294 14 O -0.973 6.973 15 O -0.998 6.998 16 C -0.679 4.679 17 C -0.030 4.030 18 C -0.127 4.127 19 C -0.064 4.064 20 C -0.091 4.091 21 O -0.556 6.556 22 Si 0.778 3.222 23 C -0.134 4.134 24 C -0.019 4.019 25 C -0.128 4.128 26 C -0.110 4.110 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.427 0.573 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.112 0.888 43 H 0.396 0.604 44 H -0.261 1.261 45 H -0.308 1.308 46 H 0.165 0.835 47 H 0.169 0.831 48 H 0.079 0.921 49 H 0.061 0.939 50 H 0.085 0.915 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 -9.496 31.043 34.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 N 0.048 4.952 3 H 0.271 0.729 4 C -0.189 4.189 5 C -0.121 4.121 6 C -0.130 4.130 7 H 0.127 0.873 8 C -0.165 4.165 9 C -0.186 4.186 10 C 0.034 3.966 11 H 0.108 0.892 12 N -0.866 5.866 13 S 2.797 3.203 14 O -0.963 6.963 15 O -0.989 6.989 16 C -0.766 4.766 17 C -0.050 4.050 18 C -0.146 4.146 19 C -0.065 4.065 20 C -0.200 4.200 21 O -0.365 6.365 22 Si 0.682 3.318 23 C -0.152 4.152 24 C -0.038 4.038 25 C -0.167 4.167 26 C -0.149 4.149 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.264 0.736 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.129 0.871 43 H 0.247 0.753 44 H -0.187 1.187 45 H -0.237 1.237 46 H 0.182 0.818 47 H 0.186 0.814 48 H 0.098 0.902 49 H 0.080 0.920 50 H 0.104 0.896 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.169 -9.930 31.227 34.309 hybrid contribution -0.447 -0.352 -1.773 1.861 sum -10.615 -10.282 29.454 32.954 Atomic orbital electron populations 1.24210 0.76362 1.09740 1.09521 1.44907 1.15928 1.19493 1.14834 0.72915 1.24138 1.05794 1.02390 0.86556 1.23961 1.06112 0.99613 0.82388 1.21714 1.03137 0.94604 0.93499 0.87318 1.21828 1.02332 0.94708 0.97637 1.22102 1.02939 0.99347 0.94178 1.21208 1.00174 0.91840 0.83382 0.89235 1.55453 1.26197 1.64815 1.40143 1.01319 0.73130 0.73353 0.72476 1.93571 1.78546 1.66096 1.58064 1.93581 1.74847 1.76968 1.53458 1.30901 1.18501 1.21644 1.05574 1.21083 0.98718 0.91927 0.93244 1.21317 0.93681 0.98858 1.00717 1.20852 0.95404 0.95689 0.94530 1.25495 0.98643 0.97050 0.98791 1.86520 1.74728 1.40283 1.34926 0.93672 0.76245 0.86840 0.75010 1.21432 1.00203 0.98433 0.95141 1.21211 0.90401 0.92305 0.99853 1.21862 1.01415 0.93763 0.99702 1.21475 1.02958 0.98654 0.91822 0.86052 0.85872 0.85570 0.85593 0.85731 0.86135 0.84114 0.83918 0.88698 0.89514 0.92091 0.90401 0.73594 0.84106 0.84888 0.87079 0.75337 1.18696 1.23690 0.81829 0.81384 0.90244 0.91981 0.89609 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.56 8.93 127.69 1.14 4.70 16 2 N -0.37 24.75 0.66 -948.86 -0.62 24.12 16 3 H 0.43 -29.64 6.62 -89.69 -0.59 -30.24 16 4 C -0.05 3.02 9.19 127.69 1.17 4.19 16 5 C 0.00 -0.08 4.12 86.30 0.36 0.28 16 6 C -0.11 5.99 2.07 -10.79 -0.02 5.97 16 7 H 0.11 -6.04 6.18 -2.39 -0.01 -6.06 16 8 C -0.13 6.25 4.96 30.60 0.15 6.40 16 9 C -0.15 5.45 5.53 30.59 0.17 5.62 16 10 C 0.14 -4.72 2.65 44.99 0.12 -4.60 16 11 H 0.09 -3.10 7.23 -2.39 -0.02 -3.12 16 12 N -1.10 29.58 5.47 -169.38 -0.93 28.66 16 13 S 2.71 -46.72 5.65 -56.49 -0.32 -47.04 16 14 O -0.97 13.30 16.54 -128.00 -2.12 11.18 16 15 O -1.00 7.85 17.28 -128.00 -2.21 5.63 16 16 C -0.68 12.34 5.82 22.27 0.13 12.46 16 17 C -0.03 0.47 9.52 22.27 0.21 0.69 16 18 C -0.13 1.95 9.69 22.27 0.22 2.17 16 19 C -0.06 1.16 5.35 -19.87 -0.11 1.06 16 20 C -0.09 1.59 2.80 71.24 0.20 1.78 16 21 O -0.56 7.90 12.83 -148.98 -1.91 5.99 16 22 Si 0.78 -15.72 29.80 68.60 2.04 -13.67 16 23 C -0.13 2.98 8.67 22.27 0.19 3.17 16 24 C -0.02 0.41 8.90 22.27 0.20 0.61 16 25 C -0.13 4.83 5.45 30.60 0.17 5.00 16 26 C -0.11 5.06 5.20 30.59 0.16 5.22 16 27 H 0.12 -7.56 6.19 -2.39 -0.01 -7.57 16 28 H 0.12 -7.73 8.11 -2.39 -0.02 -7.74 16 29 H 0.13 -7.95 8.14 -2.39 -0.02 -7.97 16 30 H 0.13 -8.07 8.11 -2.38 -0.02 -8.09 16 31 H 0.12 -7.91 8.14 -2.39 -0.02 -7.93 16 32 H 0.12 -7.62 8.14 -2.39 -0.02 -7.64 16 33 H 0.14 -8.87 8.09 -2.39 -0.02 -8.89 16 34 H 0.14 -9.04 8.09 -2.38 -0.02 -9.06 16 35 H 0.09 -5.23 6.63 -2.39 -0.02 -5.25 16 36 H 0.09 -4.24 8.14 -2.38 -0.02 -4.26 16 37 H 0.06 -1.84 7.64 -2.39 -0.02 -1.86 16 38 H 0.08 -2.93 8.14 -2.39 -0.02 -2.95 16 39 H 0.43 -12.33 8.84 -96.75 -0.85 -13.19 16 40 H 0.14 -2.25 7.62 -2.91 -0.02 -2.28 16 41 H 0.13 -2.02 8.06 -2.91 -0.02 -2.04 16 42 H 0.11 -1.84 7.96 -2.39 -0.02 -1.86 16 43 H 0.40 -8.70 8.70 -74.06 -0.64 -9.34 16 44 H -0.26 5.09 7.11 99.48 0.71 5.79 16 45 H -0.31 3.11 7.11 99.48 0.71 3.81 16 46 H 0.16 -4.61 4.91 -2.91 -0.01 -4.63 16 47 H 0.17 -4.65 7.62 -2.91 -0.02 -4.67 16 48 H 0.08 -3.01 8.14 -2.39 -0.02 -3.03 16 49 H 0.06 -2.05 8.14 -2.39 -0.02 -2.07 16 50 H 0.09 -3.95 8.14 -2.39 -0.02 -3.97 16 51 H 0.08 -3.55 8.14 -2.39 -0.02 -3.57 16 Total: 1.00 -87.34 401.18 -2.73 -90.07 By element: Atomic # 1 Polarization: -158.54 SS G_CDS: -1.11 Total: -159.66 kcal Atomic # 6 Polarization: 50.26 SS G_CDS: 4.46 Total: 54.72 kcal Atomic # 7 Polarization: 54.33 SS G_CDS: -1.55 Total: 52.78 kcal Atomic # 8 Polarization: 29.04 SS G_CDS: -6.24 Total: 22.80 kcal Atomic # 14 Polarization: -15.72 SS G_CDS: 2.04 Total: -13.67 kcal Atomic # 16 Polarization: -46.72 SS G_CDS: -0.32 Total: -47.04 kcal Total: -87.34 -2.73 -90.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17509432_13421422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.797 kcal (2) G-P(sol) polarization free energy of solvation -87.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds