Wall clock time and date at job start Mon Mar 8 2021 10:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33388 * 125.20470 * 2 1 4 4 C 1.50702 * 122.53643 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47292 * 65.59780 * 4 3 2 6 6 Si 1.86302 * 109.46924 * 305.59654 * 4 3 2 7 7 C 1.38424 * 114.92351 * 180.24720 * 3 2 1 8 8 S 1.76204 * 122.53937 * 179.72808 * 7 3 2 9 9 O 1.42097 * 106.40316 * 191.47062 * 8 7 3 10 10 O 1.42106 * 106.40062 * 324.39038 * 8 7 3 11 11 N 1.65600 * 107.21623 * 77.93014 * 8 7 3 12 12 C 1.46494 * 120.00078 * 64.99731 * 11 8 7 13 13 H 1.08998 * 109.47417 * 25.00609 * 12 11 8 14 14 C 1.53001 * 109.47244 * 144.99872 * 12 11 8 15 15 C 1.53000 * 109.47417 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.47079 * 300.00027 * 15 14 12 17 17 H 1.08999 * 109.46925 * 300.00405 * 16 15 14 18 18 C 1.53000 * 109.47079 * 179.97438 * 16 15 14 19 19 N 1.46901 * 109.46919 * 176.30898 * 18 16 15 20 20 H 1.00904 * 109.46658 * 54.16541 * 19 18 16 21 21 C 1.46898 * 109.46865 * 174.16135 * 19 18 16 22 22 C 1.46897 * 109.47317 * 294.16503 * 19 18 16 23 23 C 1.53003 * 109.46838 * 60.00061 * 16 15 14 24 24 C 1.52991 * 109.47571 * 265.00054 * 12 11 8 25 25 C 1.33385 * 114.91794 * 359.49819 * 7 3 2 26 26 C 1.50707 * 125.20293 * 180.20628 * 25 7 3 27 27 S 1.75879 * 109.59592 * 0.47169 * 25 7 3 28 28 H 1.09000 * 109.47233 * 95.97116 * 1 2 3 29 29 H 1.09006 * 109.47212 * 215.97084 * 1 2 3 30 30 H 1.09000 * 109.47253 * 335.96926 * 1 2 3 31 31 H 1.09005 * 109.47048 * 185.59772 * 4 3 2 32 32 H 0.96696 * 114.00432 * 294.36850 * 5 4 3 33 33 H 1.48501 * 109.99933 * 58.68613 * 6 4 3 34 34 H 1.48502 * 109.99941 * 180.02562 * 6 4 3 35 35 H 0.97002 * 119.99598 * 244.99814 * 11 8 7 36 36 H 1.09001 * 109.47459 * 300.00239 * 14 12 11 37 37 H 1.08999 * 109.47048 * 60.00146 * 14 12 11 38 38 H 1.08999 * 109.47054 * 59.99952 * 15 14 12 39 39 H 1.09002 * 109.47170 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.46742 * 296.31070 * 18 16 15 41 41 H 1.08997 * 109.47057 * 56.30921 * 18 16 15 42 42 H 1.08992 * 109.47165 * 64.88719 * 21 19 18 43 43 H 1.08998 * 109.46909 * 184.88987 * 21 19 18 44 44 H 1.09003 * 109.47321 * 304.88477 * 21 19 18 45 45 H 1.09000 * 109.47268 * 59.99836 * 22 19 18 46 46 H 1.08998 * 109.46922 * 179.97438 * 22 19 18 47 47 H 1.08999 * 109.46790 * 300.00048 * 22 19 18 48 48 H 1.08999 * 109.47001 * 59.99656 * 23 16 15 49 49 H 1.08999 * 109.46401 * 180.02562 * 23 16 15 50 50 H 1.09009 * 109.47414 * 300.00205 * 24 12 11 51 51 H 1.09007 * 109.47217 * 59.99791 * 24 12 11 52 52 H 1.08991 * 109.47334 * 180.28400 * 26 25 7 53 53 H 1.09002 * 109.46961 * 300.28502 * 26 25 7 54 54 H 1.09001 * 109.47152 * 60.27931 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 1.7051 2.4846 -0.0006 5 8 1.0091 2.7150 1.2260 6 14 0.5241 2.6717 -1.4293 7 6 3.6379 0.8429 -0.0054 8 16 4.8355 2.1353 -0.0135 9 8 6.0870 1.5210 -0.2887 10 8 4.2918 3.1812 -0.8071 11 7 4.9328 2.7230 1.5317 12 6 5.4298 1.8665 2.6112 13 1 6.0772 1.0950 2.1942 14 6 6.2227 2.7124 3.6095 15 6 6.7423 1.8178 4.7367 16 6 5.5604 1.1596 5.4515 17 1 4.9130 1.9309 5.8688 18 6 6.0800 0.2645 6.5782 19 7 4.9438 -0.2979 7.3203 20 1 4.3196 -0.7627 6.6781 21 6 5.4362 -1.2646 8.3108 22 6 4.2241 0.7831 8.0069 23 6 4.7676 0.3136 4.4531 24 6 4.2477 1.2088 3.3258 25 6 3.9750 -0.4477 0.0008 26 6 5.3860 -0.9771 0.0013 27 16 2.5209 -1.4372 0.0006 28 1 -0.3634 -0.1069 -1.0221 29 1 -0.3634 -0.8317 0.6036 30 1 -0.3634 0.9386 0.4185 31 1 2.5141 3.2083 -0.1007 32 1 0.2231 2.1637 1.3418 33 1 -0.5663 1.6694 -1.3214 34 1 -0.0453 4.0431 -1.4414 35 1 4.6607 3.6344 1.7219 36 1 7.0650 3.1810 3.1005 37 1 5.5754 3.4839 4.0266 38 1 7.3897 1.0466 4.3193 39 1 7.3068 2.4206 5.4481 40 1 6.6738 -0.5453 6.1543 41 1 6.6995 0.8539 7.2541 42 1 6.0407 -0.7463 9.0549 43 1 4.5897 -1.7454 8.8011 44 1 6.0433 -2.0195 7.8111 45 1 3.8588 1.5004 7.2719 46 1 3.3808 0.3658 8.5571 47 1 4.8984 1.2852 8.7006 48 1 5.4150 -0.4576 4.0357 49 1 3.9254 -0.1549 4.9623 50 1 3.6003 1.9803 3.7429 51 1 3.6828 0.6060 2.6146 52 1 5.3653 -2.0668 0.0019 53 1 5.9068 -0.6241 -0.8889 54 1 5.9066 -0.6230 0.8911 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17509432_15065288.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:06:34 Heat of formation + Delta-G solvation = 34.616442 kcal Electronic energy + Delta-G solvation = -35633.351428 eV Core-core repulsion = 31329.975015 eV Total energy + Delta-G solvation = -4303.376413 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.15571 -40.48515 -39.59120 -38.59726 -37.40829 -37.09334 -35.60322 -34.26195 -31.81943 -31.39398 -31.03047 -29.39242 -28.11197 -27.42188 -26.00807 -25.37750 -23.68363 -23.22618 -22.55957 -21.21249 -20.78124 -20.17125 -19.24892 -19.01681 -18.62846 -18.12267 -17.63496 -17.46742 -17.17538 -17.06967 -16.27403 -16.12094 -15.98745 -15.57916 -15.35010 -15.27647 -15.03266 -14.71023 -14.50342 -14.27143 -14.17043 -14.05725 -13.99671 -13.72695 -13.71329 -13.64146 -13.49499 -13.39723 -13.32352 -13.19101 -13.17066 -13.12529 -13.06487 -12.88999 -12.80097 -12.67767 -12.24720 -12.10966 -12.07639 -11.82223 -11.63408 -11.52410 -11.29192 -11.23157 -10.89806 -10.45410 -9.97960 -9.47360 -4.98721 -0.81282 -0.47589 0.37293 0.67725 0.78140 1.03654 1.23377 1.40611 1.84219 1.98714 2.59114 2.89309 3.00576 3.16126 3.23721 3.29300 3.45880 3.54929 3.56472 3.64933 3.73037 3.82285 3.94995 4.02761 4.07851 4.11765 4.19884 4.20341 4.24332 4.28832 4.33476 4.37400 4.38576 4.40317 4.46856 4.51816 4.58079 4.59826 4.65477 4.67938 4.70783 4.77622 4.82774 4.84092 4.87841 4.93433 4.94174 5.08568 5.13136 5.17236 5.18697 5.23224 5.25180 5.35053 5.51430 5.95632 6.33577 Molecular weight = 390.16amu Principal moments of inertia in cm(-1) A = 0.009809 B = 0.003492 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2853.826691 B = 8016.742575 C = 8569.181784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.196 4.196 3 C -0.063 4.063 4 C -0.085 4.085 5 O -0.528 6.528 6 Si 0.684 3.316 7 C -0.685 4.685 8 S 2.706 3.294 9 O -0.971 6.971 10 O -0.988 6.988 11 N -1.104 6.104 12 C 0.139 3.861 13 H 0.091 0.909 14 C -0.127 4.127 15 C -0.109 4.109 16 C -0.110 4.110 17 H 0.106 0.894 18 C 0.001 3.999 19 N -0.374 5.374 20 H 0.432 0.568 21 C -0.047 4.047 22 C -0.055 4.055 23 C -0.127 4.127 24 C -0.141 4.141 25 C -0.049 4.049 26 C -0.115 4.115 27 S 0.198 5.802 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.379 0.621 33 H -0.210 1.210 34 H -0.299 1.299 35 H 0.424 0.576 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.097 0.903 53 H 0.092 0.908 54 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.135 -11.690 30.155 32.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.314 4.314 3 C -0.073 4.073 4 C -0.198 4.198 5 O -0.337 6.337 6 Si 0.586 3.414 7 C -0.787 4.787 8 S 2.796 3.204 9 O -0.961 6.961 10 O -0.978 6.978 11 N -0.866 5.866 12 C 0.033 3.967 13 H 0.109 0.891 14 C -0.167 4.167 15 C -0.148 4.148 16 C -0.128 4.128 17 H 0.124 0.876 18 C -0.121 4.121 19 N 0.048 4.952 20 H 0.270 0.730 21 C -0.189 4.189 22 C -0.198 4.198 23 C -0.165 4.165 24 C -0.180 4.180 25 C -0.171 4.171 26 C -0.173 4.173 27 S 0.464 5.536 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.230 0.770 33 H -0.133 1.133 34 H -0.226 1.226 35 H 0.261 0.739 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.138 0.862 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.106 0.894 49 H 0.112 0.888 50 H 0.093 0.907 51 H 0.077 0.923 52 H 0.116 0.884 53 H 0.110 0.890 54 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.152 -12.485 29.395 32.349 hybrid contribution -1.157 1.707 0.232 2.076 sum 3.995 -10.778 29.627 31.778 Atomic orbital electron populations 1.20900 0.86868 1.03828 1.04258 1.24457 1.00650 0.95715 1.10557 1.18303 0.90728 0.96039 1.02279 1.25065 1.03579 0.94996 0.96110 1.86630 1.44170 1.66088 1.36809 0.93942 0.80636 0.79740 0.87100 1.29221 1.11280 1.13331 1.24820 1.01250 0.73254 0.72893 0.72954 1.93577 1.40879 1.77985 1.83646 1.93501 1.79954 1.56226 1.68129 1.55433 1.81074 1.24407 1.25648 1.21221 0.95645 0.92488 0.87313 0.89143 1.21829 0.99839 0.98725 0.96286 1.21470 0.97155 0.99392 0.96783 1.21685 0.98275 0.98312 0.94578 0.87561 1.23968 0.88747 1.02863 0.96479 1.44920 1.16788 1.16366 1.17090 0.73034 1.24148 1.06059 0.94369 0.94318 1.24203 1.01504 0.91937 1.02121 1.21843 1.00749 0.98090 0.95833 1.22069 0.97223 1.00003 0.98744 1.24804 1.01642 0.94685 0.95949 1.21036 0.87326 1.02951 1.06013 1.84367 0.93870 1.06783 1.68569 0.89586 0.88563 0.90662 0.85344 0.77010 1.13261 1.22592 0.73928 0.92184 0.90483 0.90208 0.89505 0.83795 0.84045 0.86095 0.85694 0.85535 0.86222 0.85558 0.85811 0.89350 0.88755 0.90736 0.92286 0.88395 0.88955 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 2.23 8.08 71.23 0.58 2.80 16 2 C -0.20 3.93 6.08 24.59 0.15 4.08 16 3 C -0.06 1.09 4.52 -20.92 -0.09 1.00 16 4 C -0.08 1.21 2.61 71.24 0.19 1.40 16 5 O -0.53 8.79 12.94 -148.98 -1.93 6.86 16 6 Si 0.68 -8.63 30.49 68.60 2.09 -6.54 16 7 C -0.69 12.34 4.72 21.22 0.10 12.44 16 8 S 2.71 -40.96 5.35 -56.49 -0.30 -41.26 16 9 O -0.97 11.63 14.00 -128.00 -1.79 9.84 16 10 O -0.99 7.25 15.15 -128.00 -1.94 5.31 16 11 N -1.10 26.09 5.47 -169.41 -0.93 25.17 16 12 C 0.14 -4.39 2.79 44.99 0.13 -4.26 16 13 H 0.09 -2.82 6.61 -2.39 -0.02 -2.84 16 14 C -0.13 4.44 5.45 30.59 0.17 4.60 16 15 C -0.11 4.82 5.20 30.60 0.16 4.98 16 16 C -0.11 5.82 2.07 -10.79 -0.02 5.80 16 17 H 0.11 -5.75 6.26 -2.39 -0.01 -5.76 16 18 C 0.00 -0.08 4.13 86.30 0.36 0.27 16 19 N -0.37 24.62 0.66 -948.88 -0.62 23.99 16 20 H 0.43 -29.44 6.53 -89.69 -0.59 -30.03 16 21 C -0.05 3.03 9.25 127.69 1.18 4.21 16 22 C -0.06 3.49 8.93 127.69 1.14 4.63 16 23 C -0.13 6.24 4.94 30.61 0.15 6.39 16 24 C -0.14 5.22 5.53 30.61 0.17 5.39 16 25 C -0.05 1.05 6.34 24.59 0.16 1.21 16 26 C -0.11 2.74 8.63 71.24 0.61 3.35 16 27 S 0.20 -4.47 23.31 -56.49 -1.32 -5.79 16 28 H 0.09 -1.77 6.95 -2.39 -0.02 -1.79 16 29 H 0.10 -2.45 8.14 -2.38 -0.02 -2.47 16 30 H 0.08 -1.75 3.81 -2.39 -0.01 -1.75 16 31 H 0.13 -1.48 4.52 -2.38 -0.01 -1.49 16 32 H 0.38 -8.47 6.15 -74.06 -0.46 -8.93 16 33 H -0.21 3.31 4.52 99.48 0.45 3.76 16 34 H -0.30 1.23 7.11 99.48 0.71 1.93 16 35 H 0.42 -10.50 8.84 -96.75 -0.85 -11.36 16 36 H 0.06 -1.77 8.14 -2.39 -0.02 -1.79 16 37 H 0.08 -2.69 8.14 -2.39 -0.02 -2.71 16 38 H 0.08 -3.47 8.14 -2.39 -0.02 -3.49 16 39 H 0.09 -3.86 8.14 -2.39 -0.02 -3.88 16 40 H 0.14 -9.06 8.01 -2.39 -0.02 -9.08 16 41 H 0.14 -8.82 8.07 -2.39 -0.02 -8.83 16 42 H 0.12 -7.62 8.09 -2.39 -0.02 -7.64 16 43 H 0.12 -7.94 8.14 -2.39 -0.02 -7.96 16 44 H 0.13 -8.10 8.01 -2.39 -0.02 -8.12 16 45 H 0.12 -7.34 6.24 -2.39 -0.01 -7.36 16 46 H 0.13 -7.91 8.14 -2.39 -0.02 -7.93 16 47 H 0.12 -7.70 8.08 -2.39 -0.02 -7.72 16 48 H 0.09 -4.35 8.14 -2.39 -0.02 -4.37 16 49 H 0.09 -5.21 6.58 -2.39 -0.02 -5.23 16 50 H 0.07 -2.65 8.14 -2.38 -0.02 -2.67 16 51 H 0.06 -1.90 6.80 -2.38 -0.02 -1.91 16 52 H 0.10 -2.71 8.14 -2.39 -0.02 -2.73 16 53 H 0.09 -1.75 7.06 -2.39 -0.02 -1.77 16 54 H 0.11 -3.04 6.93 -2.39 -0.02 -3.06 16 Total: 1.00 -80.31 413.23 -2.80 -83.11 By element: Atomic # 1 Polarization: -157.80 SS G_CDS: -1.18 Total: -158.97 kcal Atomic # 6 Polarization: 53.16 SS G_CDS: 5.12 Total: 58.28 kcal Atomic # 7 Polarization: 50.71 SS G_CDS: -1.55 Total: 49.16 kcal Atomic # 8 Polarization: 27.67 SS G_CDS: -5.66 Total: 22.01 kcal Atomic # 14 Polarization: -8.63 SS G_CDS: 2.09 Total: -6.54 kcal Atomic # 16 Polarization: -45.43 SS G_CDS: -1.62 Total: -47.05 kcal Total: -80.31 -2.80 -83.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17509432_15065288.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.728 kcal (2) G-P(sol) polarization free energy of solvation -80.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds