Wall clock time and date at job start Mon Mar 8 2021 10:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 H 1.00899 * 109.47294 * 2 1 4 4 C 1.46900 * 109.47253 * 240.00046 * 2 1 3 5 5 C 1.46903 * 109.47363 * 120.00145 * 2 1 3 6 6 C 1.53003 * 109.47213 * 185.90787 * 5 2 1 7 7 H 1.09001 * 109.47156 * 305.09059 * 6 5 2 8 8 C 1.53007 * 109.46802 * 65.08959 * 6 5 2 9 9 C 1.52995 * 109.46745 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47503 * 300.00040 * 9 8 6 11 11 H 1.09001 * 109.47303 * 180.02562 * 10 9 8 12 12 N 1.46497 * 109.46947 * 300.00250 * 10 9 8 13 13 S 1.65607 * 119.99550 * 264.99624 * 12 10 9 14 14 O 1.42102 * 106.39833 * 178.54124 * 13 12 10 15 15 O 1.42098 * 106.40518 * 311.46039 * 13 12 10 16 16 C 1.76201 * 107.21924 * 65.00497 * 13 12 10 17 17 C 1.38236 * 119.99610 * 269.72655 * 16 13 12 18 18 C 1.38237 * 119.99528 * 179.76487 * 17 16 13 19 19 C 1.38234 * 120.00441 * 0.48126 * 18 17 16 20 20 C 1.50695 * 120.00497 * 179.76863 * 19 18 17 21 21 O 1.42899 * 109.47033 * 245.02389 * 20 19 18 22 22 Si 1.86302 * 109.46858 * 5.02157 * 20 19 18 23 23 C 1.38241 * 119.99479 * 359.79126 * 19 18 17 24 24 C 1.38228 * 120.00245 * 359.95683 * 23 19 18 25 25 C 1.52998 * 109.47045 * 60.00361 * 10 9 8 26 26 C 1.53001 * 109.46943 * 185.08432 * 6 5 2 27 27 H 1.08997 * 109.47032 * 175.05501 * 1 2 3 28 28 H 1.08999 * 109.47169 * 295.06159 * 1 2 3 29 29 H 1.09002 * 109.47017 * 55.05823 * 1 2 3 30 30 H 1.09006 * 109.47018 * 60.00093 * 4 2 1 31 31 H 1.09001 * 109.47503 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47356 * 299.99877 * 4 2 1 33 33 H 1.08997 * 109.46821 * 305.91283 * 5 2 1 34 34 H 1.09005 * 109.46767 * 65.90998 * 5 2 1 35 35 H 1.09002 * 109.46941 * 299.99554 * 8 6 5 36 36 H 1.09001 * 109.47184 * 60.00117 * 8 6 5 37 37 H 1.09004 * 109.46908 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47279 * 60.00106 * 9 8 6 39 39 H 0.96994 * 120.00615 * 85.00079 * 12 10 9 40 40 H 1.07995 * 120.00381 * 359.97438 * 17 16 13 41 41 H 1.08001 * 119.99816 * 180.25432 * 18 17 16 42 42 H 1.08997 * 109.47298 * 125.02400 * 20 19 18 43 43 H 0.96694 * 114.00021 * 60.00249 * 21 20 19 44 44 H 1.48503 * 109.99789 * 179.97438 * 22 20 19 45 45 H 1.48500 * 110.00065 * 301.31802 * 22 20 19 46 46 H 1.08004 * 119.99510 * 179.97438 * 23 19 18 47 47 H 1.07996 * 120.00116 * 180.02562 * 24 23 19 48 48 H 1.08994 * 109.47033 * 180.02562 * 25 10 9 49 49 H 1.09001 * 109.47361 * 59.99633 * 25 10 9 50 50 H 1.09000 * 109.47273 * 300.00602 * 26 6 5 51 51 H 1.09001 * 109.46464 * 60.00610 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6925 -1.1994 5 6 1.9587 -0.6925 1.1994 6 6 3.4815 -0.5652 1.2758 7 1 3.9237 -0.9321 0.3496 8 6 3.8610 0.9035 1.4755 9 6 5.3837 1.0308 1.5525 10 6 5.9057 0.2046 2.7297 11 1 6.9905 0.2956 2.7849 12 7 5.3108 0.6979 3.9743 13 16 6.1257 1.8028 4.9004 14 8 5.2819 2.1013 6.0041 15 8 7.4492 1.3064 5.0458 16 6 6.2511 3.2845 3.9550 17 6 7.3411 3.4873 3.1294 18 6 7.4371 4.6476 2.3841 19 6 6.4480 5.6093 2.4718 20 6 6.5552 6.8765 1.6632 21 8 6.6974 7.9928 2.5439 22 14 8.0411 6.7751 0.5441 23 6 5.3608 5.4089 3.3017 24 6 5.2622 4.2464 4.0431 25 6 5.5262 -1.2641 2.5301 26 6 4.0039 -1.3914 2.4529 27 1 -0.3633 -1.0238 -0.0886 28 1 -0.3633 0.4353 0.9309 29 1 -0.3633 0.5886 -0.8424 30 1 1.5953 -0.1786 -2.0895 31 1 3.0487 -0.6921 -1.1997 32 1 1.5954 -1.7202 -1.1995 33 1 1.5115 -0.2435 2.0862 34 1 1.6843 -1.7462 1.1480 35 1 3.4888 1.4922 0.6369 36 1 3.4188 1.2704 2.4017 37 1 5.6542 2.0772 1.6943 38 1 5.8263 0.6637 0.6265 39 1 4.4398 0.3773 4.2560 40 1 8.1160 2.7380 3.0642 41 1 8.2866 4.8043 1.7359 42 1 5.6549 7.0008 1.0615 43 1 7.4794 7.9493 3.1109 44 1 8.1576 8.0186 -0.2593 45 1 9.2716 6.5737 1.3506 46 1 4.5882 6.1605 3.3706 47 1 4.4126 4.0896 4.6912 48 1 5.8977 -1.8526 3.3689 49 1 5.9687 -1.6311 1.6040 50 1 3.5616 -1.0245 3.3791 51 1 3.7335 -2.4377 2.3106 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17509452_13421422.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:10:10 Heat of formation + Delta-G solvation = 48.788919 kcal Electronic energy + Delta-G solvation = -31793.928222 eV Core-core repulsion = 27713.089365 eV Total energy + Delta-G solvation = -4080.838856 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.173 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -44.60105 -41.75270 -41.48496 -39.20013 -38.70402 -37.80111 -36.79635 -34.03359 -33.54279 -33.18327 -33.08725 -31.96453 -29.87203 -28.17122 -27.82840 -25.40588 -25.07758 -24.49024 -23.93168 -22.66024 -21.79382 -21.45898 -20.28563 -20.08633 -19.77154 -19.64983 -19.13915 -18.54106 -17.95412 -17.61316 -17.46159 -17.25830 -17.03439 -16.97944 -16.70784 -16.44866 -16.38145 -16.31929 -15.97537 -15.91217 -15.78322 -15.72393 -15.41735 -15.30731 -15.12102 -14.85613 -14.80784 -14.68298 -14.55741 -14.04828 -13.98287 -13.92466 -13.76367 -13.58214 -13.44971 -13.39765 -13.20161 -12.86460 -12.73878 -12.59507 -11.83233 -11.60649 -11.36555 -11.11580 -5.88682 -1.70461 -1.50371 -1.33067 -0.79407 0.33029 0.44214 0.50513 0.66145 0.74292 0.86047 1.15535 1.29770 1.36625 1.39027 1.62677 1.68187 1.76659 1.77200 1.80195 1.94182 2.11197 2.12874 2.21291 2.26751 2.28091 2.34219 2.38530 2.41114 2.49466 2.54619 2.59729 2.74070 2.75114 2.80710 2.82480 2.90718 3.11081 3.15183 3.19541 3.32246 3.35139 3.44151 3.46265 3.51425 3.61524 3.63750 3.81433 3.84253 3.86319 3.97180 4.01487 4.29321 4.70790 4.71653 5.46241 Molecular weight = 356.17amu Principal moments of inertia in cm(-1) A = 0.009252 B = 0.003891 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.680657 B = 7194.047516 C = 8886.108519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.389 5.389 3 H 0.424 0.576 4 C -0.053 4.053 5 C -0.010 4.010 6 C -0.117 4.117 7 H 0.099 0.901 8 C -0.128 4.128 9 C -0.143 4.143 10 C 0.145 3.855 11 H 0.103 0.897 12 N -1.112 6.112 13 S 2.690 3.310 14 O -0.951 6.951 15 O -0.947 6.947 16 C -0.675 4.675 17 C -0.016 4.016 18 C -0.138 4.138 19 C -0.058 4.058 20 C -0.083 4.083 21 O -0.523 6.523 22 Si 0.683 3.317 23 C -0.113 4.113 24 C -0.018 4.018 25 C -0.124 4.124 26 C -0.113 4.113 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.416 0.584 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.123 0.877 43 H 0.381 0.619 44 H -0.251 1.251 45 H -0.256 1.256 46 H 0.137 0.863 47 H 0.142 0.858 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.075 0.925 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.620 -14.307 -17.022 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 N 0.035 4.965 3 H 0.261 0.739 4 C -0.194 4.194 5 C -0.131 4.131 6 C -0.136 4.136 7 H 0.117 0.883 8 C -0.166 4.166 9 C -0.182 4.182 10 C 0.038 3.962 11 H 0.121 0.879 12 N -0.873 5.873 13 S 2.779 3.221 14 O -0.941 6.941 15 O -0.936 6.936 16 C -0.762 4.762 17 C -0.036 4.036 18 C -0.156 4.156 19 C -0.058 4.058 20 C -0.193 4.193 21 O -0.330 6.330 22 Si 0.583 3.417 23 C -0.132 4.132 24 C -0.038 4.038 25 C -0.163 4.163 26 C -0.152 4.152 27 H 0.141 0.859 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.252 0.748 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.141 0.859 43 H 0.229 0.771 44 H -0.176 1.176 45 H -0.181 1.181 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.093 0.907 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.994 -14.094 -16.751 28.338 hybrid contribution -0.190 1.319 0.670 1.491 sum -18.183 -12.775 -16.082 27.431 Atomic orbital electron populations 1.24152 0.75532 1.09720 1.09596 1.45120 1.16314 1.19122 1.15983 0.73932 1.24196 1.06022 1.02490 0.86741 1.24200 0.99233 1.02478 0.87238 1.21857 0.90166 0.98590 1.02952 0.88314 1.21755 0.98680 0.93545 1.02570 1.22114 0.94417 1.02242 0.99425 1.20894 0.98749 0.94077 0.82475 0.87861 1.55768 1.34394 1.59845 1.37272 1.02131 0.73824 0.73198 0.72910 1.93645 1.68011 1.84505 1.47962 1.93642 1.36931 1.78639 1.84422 1.30959 1.04270 1.22477 1.18460 1.20921 0.94525 0.97259 0.90859 1.21274 0.99142 0.94414 1.00787 1.20740 0.93963 0.95499 0.95619 1.25188 1.12789 0.84290 0.96998 1.86651 1.49648 1.42396 1.54300 0.95352 0.76060 0.87565 0.82711 1.21220 0.98430 0.97367 0.96188 1.20960 0.96347 0.92000 0.94465 1.21778 0.94827 0.95266 1.04423 1.21508 0.96958 1.00101 0.96600 0.85873 0.85831 0.85712 0.85724 0.85716 0.85829 0.85071 0.84983 0.92200 0.89998 0.89924 0.89685 0.74830 0.83717 0.84354 0.85888 0.77086 1.17593 1.18081 0.84524 0.84050 0.89488 0.89664 0.90676 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.55 9.25 60.06 0.56 2.11 16 2 N -0.39 12.87 0.66 -251.26 -0.17 12.70 16 3 H 0.42 -14.48 6.60 -39.29 -0.26 -14.74 16 4 C -0.05 1.69 8.94 60.06 0.54 2.23 16 5 C -0.01 0.31 4.12 -3.82 -0.02 0.29 16 6 C -0.12 3.21 2.09 -90.61 -0.19 3.02 16 7 H 0.10 -2.80 6.21 -51.93 -0.32 -3.12 16 8 C -0.13 3.26 4.81 -26.73 -0.13 3.13 16 9 C -0.14 3.07 5.64 -26.73 -0.15 2.92 16 10 C 0.15 -2.72 3.12 -67.93 -0.21 -2.93 16 11 H 0.10 -1.77 7.50 -51.93 -0.39 -2.16 16 12 N -1.11 18.91 4.74 -4.89 -0.02 18.88 16 13 S 2.69 -30.53 5.72 -107.50 -0.61 -31.14 16 14 O -0.95 7.23 17.28 -57.17 -0.99 6.24 16 15 O -0.95 7.00 16.61 -57.17 -0.95 6.05 16 16 C -0.67 8.23 5.06 -39.58 -0.20 8.03 16 17 C -0.02 0.20 8.60 -39.58 -0.34 -0.14 16 18 C -0.14 1.70 8.67 -39.58 -0.34 1.35 16 19 C -0.06 0.68 5.35 -104.62 -0.56 0.12 16 20 C -0.08 0.93 2.80 36.00 0.10 1.03 16 21 O -0.52 4.41 12.83 -35.23 -0.45 3.96 16 22 Si 0.68 -7.60 29.88 -169.99 -5.08 -12.68 16 23 C -0.11 1.34 9.69 -39.58 -0.38 0.96 16 24 C -0.02 0.23 9.52 -39.59 -0.38 -0.15 16 25 C -0.12 2.49 5.63 -26.75 -0.15 2.34 16 26 C -0.11 2.66 5.02 -26.75 -0.13 2.53 16 27 H 0.12 -3.90 8.09 -51.93 -0.42 -4.32 16 28 H 0.12 -3.93 8.01 -51.93 -0.42 -4.35 16 29 H 0.12 -3.99 8.14 -51.93 -0.42 -4.41 16 30 H 0.12 -4.00 8.14 -51.93 -0.42 -4.42 16 31 H 0.12 -3.96 6.22 -51.93 -0.32 -4.29 16 32 H 0.12 -3.92 8.08 -51.93 -0.42 -4.34 16 33 H 0.13 -4.07 8.00 -51.93 -0.42 -4.49 16 34 H 0.13 -4.10 8.07 -51.93 -0.42 -4.52 16 35 H 0.06 -1.67 6.61 -51.93 -0.34 -2.01 16 36 H 0.08 -2.02 7.44 -51.93 -0.39 -2.41 16 37 H 0.08 -1.63 6.19 -51.93 -0.32 -1.96 16 38 H 0.08 -1.89 8.14 -51.93 -0.42 -2.32 16 39 H 0.42 -7.97 6.81 -34.47 -0.23 -8.21 16 40 H 0.15 -1.95 7.61 -52.49 -0.40 -2.35 16 41 H 0.14 -1.86 4.85 -52.49 -0.25 -2.12 16 42 H 0.12 -1.56 7.96 -51.93 -0.41 -1.98 16 43 H 0.38 -4.07 8.70 45.56 0.40 -3.68 16 44 H -0.25 1.71 7.11 56.52 0.40 2.12 16 45 H -0.26 2.18 7.01 56.52 0.40 2.58 16 46 H 0.14 -1.68 8.06 -52.48 -0.42 -2.11 16 47 H 0.14 -1.88 7.62 -52.49 -0.40 -2.28 16 48 H 0.09 -1.54 8.14 -51.93 -0.42 -1.96 16 49 H 0.08 -1.76 8.14 -51.93 -0.42 -2.18 16 50 H 0.07 -1.73 6.50 -51.93 -0.34 -2.07 16 51 H 0.08 -1.88 8.14 -51.93 -0.42 -2.30 16 LS Contribution 394.12 15.07 5.94 5.94 Total: 1.00 -41.03 394.12 -12.57 -53.60 By element: Atomic # 1 Polarization: -82.15 SS G_CDS: -8.24 Total: -90.39 kcal Atomic # 6 Polarization: 28.84 SS G_CDS: -1.99 Total: 26.84 kcal Atomic # 7 Polarization: 31.78 SS G_CDS: -0.19 Total: 31.59 kcal Atomic # 8 Polarization: 18.64 SS G_CDS: -2.39 Total: 16.25 kcal Atomic # 14 Polarization: -7.60 SS G_CDS: -5.08 Total: -12.68 kcal Atomic # 16 Polarization: -30.53 SS G_CDS: -0.61 Total: -31.14 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -41.03 -12.57 -53.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17509452_13421422.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.385 kcal (2) G-P(sol) polarization free energy of solvation -41.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds