Wall clock time and date at job start Mon Mar 8 2021 10:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 H 1.00901 * 109.46729 * 2 1 4 4 C 1.46893 * 109.47283 * 119.99563 * 2 1 3 5 5 C 1.46900 * 109.47238 * 240.00264 * 2 1 3 6 6 C 1.53004 * 109.47258 * 66.05522 * 5 2 1 7 7 H 1.09000 * 109.46790 * 304.72317 * 6 5 2 8 8 C 1.53002 * 109.46997 * 64.71800 * 6 5 2 9 9 C 1.53001 * 109.47178 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46775 * 299.99603 * 9 8 6 11 11 H 1.08994 * 109.47045 * 180.02562 * 10 9 8 12 12 N 1.46496 * 109.47295 * 300.00416 * 10 9 8 13 13 S 1.65600 * 119.99914 * 215.05454 * 12 10 9 14 14 O 1.42092 * 106.40366 * 178.75254 * 13 12 10 15 15 O 1.42097 * 106.40305 * 311.67638 * 13 12 10 16 16 C 1.76202 * 107.21995 * 65.21338 * 13 12 10 17 17 C 1.38215 * 119.99821 * 63.43341 * 16 13 12 18 18 C 1.50702 * 120.00070 * 0.02562 * 17 16 13 19 19 O 1.42891 * 109.47272 * 75.71301 * 18 17 16 20 20 Si 1.86307 * 109.47069 * 195.71458 * 18 17 16 21 21 C 1.38262 * 119.99770 * 179.74720 * 17 16 13 22 22 C 1.38207 * 120.00062 * 0.53060 * 21 17 16 23 23 C 1.38264 * 119.99973 * 359.74595 * 22 21 17 24 24 C 1.38209 * 120.00079 * 359.97438 * 23 22 21 25 25 C 1.53002 * 109.46944 * 60.00254 * 10 9 8 26 26 C 1.52994 * 109.47158 * 184.71511 * 6 5 2 27 27 H 1.09000 * 109.46953 * 174.48097 * 1 2 3 28 28 H 1.08997 * 109.47484 * 294.47752 * 1 2 3 29 29 H 1.09001 * 109.47364 * 54.47926 * 1 2 3 30 30 H 1.09001 * 109.47400 * 180.02562 * 4 2 1 31 31 H 1.08997 * 109.47934 * 300.00628 * 4 2 1 32 32 H 1.09007 * 109.47045 * 60.00671 * 4 2 1 33 33 H 1.08991 * 109.47019 * 306.05550 * 5 2 1 34 34 H 1.08996 * 109.46784 * 186.05499 * 5 2 1 35 35 H 1.09004 * 109.47040 * 59.99858 * 8 6 5 36 36 H 1.09003 * 109.47000 * 300.00198 * 8 6 5 37 37 H 1.09002 * 109.47164 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.47190 * 59.99832 * 9 8 6 39 39 H 0.96995 * 120.00366 * 35.05377 * 12 10 9 40 40 H 1.09003 * 109.47014 * 315.71148 * 18 17 16 41 41 H 0.96700 * 114.00384 * 184.97074 * 19 18 17 42 42 H 1.48498 * 109.99652 * 178.68026 * 20 18 17 43 43 H 1.48494 * 109.99650 * 300.00032 * 20 18 17 44 44 H 1.07998 * 119.99720 * 180.30179 * 21 17 16 45 45 H 1.07997 * 120.00354 * 179.76909 * 22 21 17 46 46 H 1.07993 * 119.99938 * 179.97438 * 23 22 21 47 47 H 1.08001 * 120.00105 * 179.97438 * 24 23 22 48 48 H 1.08996 * 109.47197 * 59.99663 * 25 10 9 49 49 H 1.09002 * 109.47547 * 180.02562 * 25 10 9 50 50 H 1.08996 * 109.47438 * 300.00079 * 26 6 5 51 51 H 1.09006 * 109.47067 * 60.00452 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 1 1.8053 0.9513 0.0000 4 6 1.9587 -0.6924 1.1994 5 6 1.9587 -0.6924 -1.1995 6 6 1.5767 0.1114 -2.4441 7 1 0.4996 0.2780 -2.4525 8 6 2.3011 1.4589 -2.4231 9 6 1.9187 2.2629 -3.6673 10 6 2.3240 1.4855 -4.9213 11 1 2.0521 2.0585 -5.8077 12 7 3.7717 1.2615 -4.9104 13 16 4.6224 1.2750 -6.3311 14 8 5.9839 1.0604 -5.9857 15 8 3.9089 0.4414 -7.2340 16 6 4.5258 2.9098 -6.9814 17 6 5.0797 3.9655 -6.2822 18 6 5.7668 3.7183 -4.9639 19 8 7.0500 3.1347 -5.1975 20 14 5.9747 5.3338 -4.0594 21 6 5.0085 5.2475 -6.7949 22 6 4.3739 5.4750 -8.0014 23 6 3.8147 4.4197 -8.6981 24 6 3.8909 3.1373 -8.1884 25 6 1.5996 0.1380 -4.9423 26 6 1.9824 -0.6662 -3.6977 27 1 -0.3633 -1.0229 -0.0988 28 1 -0.3634 0.4258 0.9353 29 1 -0.3634 0.5971 -0.8364 30 1 3.0487 -0.6920 1.1997 31 1 1.5953 -0.1786 2.0894 32 1 1.5954 -1.7201 1.1994 33 1 1.5096 -1.6839 -1.2553 34 1 3.0432 -0.7872 -1.1468 35 1 3.3783 1.2922 -2.4146 36 1 2.0122 2.0128 -1.5299 37 1 2.4352 3.2227 -3.6526 38 1 0.8416 2.4295 -3.6754 39 1 4.2320 1.1053 -4.0710 40 1 5.1632 3.0396 -4.3612 41 1 7.5182 2.8782 -4.3913 42 1 6.6224 5.0995 -2.7438 43 1 6.7959 6.2679 -4.8707 44 1 5.4457 6.0717 -6.2509 45 1 4.3150 6.4769 -8.4002 46 1 3.3184 4.5975 -9.6407 47 1 3.4538 2.3131 -8.7324 48 1 0.5225 0.3047 -4.9504 49 1 1.8886 -0.4161 -5.8354 50 1 3.0595 -0.8328 -3.6892 51 1 1.4663 -1.6262 -3.7127 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17509452_2726874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:10:32 Heat of formation + Delta-G solvation = 29.487577 kcal Electronic energy + Delta-G solvation = -32496.525736 eV Core-core repulsion = 28414.849911 eV Total energy + Delta-G solvation = -4081.675825 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.13786 -40.68314 -39.74230 -38.53865 -37.58731 -36.98078 -35.11565 -33.03219 -32.45057 -31.73283 -31.37765 -29.34384 -27.72941 -26.98097 -25.42444 -24.46847 -23.55385 -22.74783 -22.52649 -21.18055 -20.21673 -19.24346 -19.04732 -18.73292 -18.51043 -17.71531 -17.31114 -17.19842 -17.03216 -16.53770 -16.08209 -15.99202 -15.66406 -15.25274 -15.13751 -15.12875 -14.92826 -14.44735 -14.18857 -13.90250 -13.85816 -13.72640 -13.58572 -13.53478 -13.30042 -13.23816 -13.21577 -13.11937 -13.10952 -13.02722 -12.94893 -12.79344 -12.37063 -12.25347 -12.15440 -12.05819 -11.76347 -11.50134 -11.29829 -11.15390 -10.65562 -10.50370 -10.32037 -10.12711 -5.02580 -0.72359 -0.33369 0.05823 1.07222 1.13546 1.52182 1.90228 1.96280 2.31927 2.64701 2.92954 3.03031 3.19745 3.29336 3.31147 3.58157 3.63322 3.68269 3.77213 3.81014 3.84967 3.94422 4.01518 4.12446 4.16099 4.21643 4.24692 4.27975 4.29132 4.37956 4.40497 4.44255 4.44293 4.53743 4.60849 4.64390 4.70350 4.72362 4.77391 4.87373 4.89953 4.91677 4.93316 5.00635 5.12260 5.18237 5.22869 5.24946 5.28742 5.35721 5.46697 5.54656 5.68836 6.10125 6.58758 Molecular weight = 356.17amu Principal moments of inertia in cm(-1) A = 0.012694 B = 0.003953 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.190562 B = 7081.757009 C = 7866.735657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.371 5.371 3 H 0.435 0.565 4 C -0.048 4.048 5 C -0.001 4.001 6 C -0.107 4.107 7 H 0.115 0.885 8 C -0.137 4.137 9 C -0.126 4.126 10 C 0.143 3.857 11 H 0.074 0.926 12 N -1.091 6.091 13 S 2.697 3.303 14 O -0.967 6.967 15 O -0.992 6.992 16 C -0.668 4.668 17 C 0.017 3.983 18 C -0.120 4.120 19 O -0.535 6.535 20 Si 0.778 3.222 21 C -0.149 4.149 22 C -0.060 4.060 23 C -0.138 4.138 24 C -0.041 4.041 25 C -0.145 4.145 26 C -0.114 4.114 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.428 0.572 40 H 0.108 0.892 41 H 0.396 0.604 42 H -0.268 1.268 43 H -0.310 1.310 44 H 0.145 0.855 45 H 0.158 0.842 46 H 0.154 0.846 47 H 0.144 0.856 48 H 0.090 0.910 49 H 0.044 0.956 50 H 0.065 0.935 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.010 -5.264 27.288 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 N 0.052 4.948 3 H 0.273 0.727 4 C -0.190 4.190 5 C -0.124 4.124 6 C -0.126 4.126 7 H 0.133 0.867 8 C -0.174 4.174 9 C -0.165 4.165 10 C 0.036 3.964 11 H 0.093 0.907 12 N -0.858 5.858 13 S 2.786 3.214 14 O -0.956 6.956 15 O -0.982 6.982 16 C -0.754 4.754 17 C 0.016 3.984 18 C -0.228 4.228 19 O -0.345 6.345 20 Si 0.682 3.318 21 C -0.168 4.168 22 C -0.078 4.078 23 C -0.157 4.157 24 C -0.061 4.061 25 C -0.185 4.185 26 C -0.152 4.152 27 H 0.136 0.864 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.268 0.732 40 H 0.126 0.874 41 H 0.246 0.754 42 H -0.194 1.194 43 H -0.239 1.239 44 H 0.162 0.838 45 H 0.176 0.824 46 H 0.171 0.829 47 H 0.161 0.839 48 H 0.109 0.891 49 H 0.063 0.937 50 H 0.084 0.916 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.366 -5.553 26.508 31.644 hybrid contribution 1.451 0.037 -0.671 1.599 sum -14.915 -5.516 25.836 30.338 Atomic orbital electron populations 1.24216 0.76156 1.09586 1.09787 1.44872 1.16028 1.19442 1.14503 0.72703 1.24131 1.05721 1.02403 0.86712 1.23960 1.05965 0.99573 0.82852 1.21670 1.03553 0.94928 0.92443 0.86748 1.21932 1.01763 0.94696 0.99029 1.21857 1.03688 0.98950 0.91989 1.21068 0.77086 0.96753 1.01452 0.90743 1.55405 1.17555 1.88736 1.24059 1.01662 0.72708 0.73361 0.73646 1.93648 1.33864 1.84941 1.83197 1.93558 1.74655 1.64769 1.65207 1.30767 1.13795 1.23259 1.07600 1.19049 0.92467 0.92684 0.94246 1.25511 0.87767 1.11258 0.98253 1.86763 1.29809 1.80904 1.36989 0.94609 0.88900 0.72869 0.75379 1.21518 1.00816 0.96780 0.97639 1.21830 0.92019 1.00892 0.93030 1.21693 1.00332 0.92308 1.01338 1.21229 0.93205 0.98903 0.92736 1.22075 1.01414 0.95947 0.99041 1.21447 1.02139 0.98664 0.92967 0.86369 0.85437 0.85500 0.85752 0.85471 0.86475 0.84705 0.84326 0.90108 0.87475 0.89507 0.88504 0.73188 0.87390 0.75387 1.19444 1.23913 0.83796 0.82437 0.82880 0.83866 0.89142 0.93716 0.91620 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 3.58 8.88 127.69 1.13 4.71 16 2 N -0.37 24.88 0.66 -948.88 -0.62 24.26 16 3 H 0.43 -30.72 6.57 -89.69 -0.59 -31.31 16 4 C -0.05 3.08 9.18 127.69 1.17 4.25 16 5 C 0.00 0.08 4.12 86.30 0.36 0.44 16 6 C -0.11 5.83 2.08 -10.79 -0.02 5.81 16 7 H 0.11 -6.51 6.34 -2.39 -0.02 -6.52 16 8 C -0.14 7.26 4.77 30.60 0.15 7.41 16 9 C -0.13 5.54 5.63 30.60 0.17 5.71 16 10 C 0.14 -4.88 2.98 44.99 0.13 -4.74 16 11 H 0.07 -2.25 7.86 -2.39 -0.02 -2.27 16 12 N -1.09 33.23 3.46 -169.39 -0.59 32.64 16 13 S 2.70 -43.20 4.90 -56.49 -0.28 -43.48 16 14 O -0.97 8.99 15.04 -119.18 -1.79 7.20 16 15 O -0.99 8.98 16.23 -128.00 -2.08 6.90 16 16 C -0.67 9.87 5.75 22.27 0.13 10.00 16 17 C 0.02 -0.28 5.28 -19.86 -0.10 -0.38 16 18 C -0.12 2.52 1.84 71.24 0.13 2.65 16 19 O -0.53 7.44 10.46 -127.50 -1.33 6.11 16 20 Si 0.78 -17.86 30.31 68.60 2.08 -15.78 16 21 C -0.15 2.49 8.66 22.27 0.19 2.68 16 22 C -0.06 1.05 10.05 22.27 0.22 1.27 16 23 C -0.14 2.28 10.05 22.27 0.22 2.50 16 24 C -0.04 0.59 9.55 22.27 0.21 0.80 16 25 C -0.15 4.90 5.64 30.61 0.17 5.07 16 26 C -0.11 4.81 5.05 30.61 0.15 4.96 16 27 H 0.12 -7.43 8.00 -2.39 -0.02 -7.44 16 28 H 0.13 -8.22 8.08 -2.39 -0.02 -8.24 16 29 H 0.13 -8.19 6.50 -2.39 -0.02 -8.21 16 30 H 0.12 -7.96 8.10 -2.39 -0.02 -7.98 16 31 H 0.13 -8.17 8.11 -2.39 -0.02 -8.19 16 32 H 0.12 -7.34 8.14 -2.38 -0.02 -7.36 16 33 H 0.13 -8.26 7.99 -2.39 -0.02 -8.28 16 34 H 0.14 -8.64 8.07 -2.39 -0.02 -8.66 16 35 H 0.08 -4.26 6.51 -2.38 -0.02 -4.27 16 36 H 0.11 -6.53 6.60 -2.39 -0.02 -6.55 16 37 H 0.09 -3.75 8.14 -2.39 -0.02 -3.77 16 38 H 0.10 -4.40 8.14 -2.39 -0.02 -4.42 16 39 H 0.43 -15.95 6.45 -96.75 -0.62 -16.58 16 40 H 0.11 -3.25 5.76 -2.39 -0.01 -3.27 16 41 H 0.40 -8.77 8.86 -74.06 -0.66 -9.42 16 42 H -0.27 5.61 7.11 99.48 0.71 6.31 16 43 H -0.31 3.90 6.71 99.48 0.67 4.57 16 44 H 0.14 -2.73 4.91 -2.91 -0.01 -2.75 16 45 H 0.16 -3.51 8.06 -2.91 -0.02 -3.53 16 46 H 0.15 -3.12 8.06 -2.91 -0.02 -3.15 16 47 H 0.14 -2.10 7.34 -2.91 -0.02 -2.12 16 48 H 0.09 -3.26 8.14 -2.39 -0.02 -3.28 16 49 H 0.04 -1.06 7.64 -2.39 -0.02 -1.08 16 50 H 0.07 -2.62 7.44 -2.39 -0.02 -2.64 16 51 H 0.07 -3.02 8.14 -2.38 -0.02 -3.04 16 Total: 1.00 -91.36 388.35 -1.11 -92.46 By element: Atomic # 1 Polarization: -162.52 SS G_CDS: -0.92 Total: -163.44 kcal Atomic # 6 Polarization: 48.71 SS G_CDS: 4.43 Total: 53.14 kcal Atomic # 7 Polarization: 58.10 SS G_CDS: -1.21 Total: 56.90 kcal Atomic # 8 Polarization: 25.41 SS G_CDS: -5.20 Total: 20.21 kcal Atomic # 14 Polarization: -17.86 SS G_CDS: 2.08 Total: -15.78 kcal Atomic # 16 Polarization: -43.20 SS G_CDS: -0.28 Total: -43.48 kcal Total: -91.36 -1.11 -92.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17509452_2726874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.950 kcal (2) G-P(sol) polarization free energy of solvation -91.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds