Wall clock time and date at job start Mon Mar 8 2021 10:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52967 * 109.43945 * 2 1 4 4 C 1.53119 * 109.44439 * 181.68694 * 3 2 1 5 5 C 1.52842 * 109.22020 * 301.98254 * 4 3 2 6 6 C 1.53237 * 113.40061 * 286.06581 * 5 4 3 7 7 C 1.53836 * 83.16056 * 218.99903 * 6 5 4 8 8 N 1.46754 * 113.47261 * 187.28937 * 5 4 3 9 9 S 1.65606 * 136.08728 * 321.78047 * 8 5 4 10 10 O 1.42100 * 106.40321 * 341.40200 * 9 8 5 11 11 O 1.42107 * 106.39639 * 208.48515 * 9 8 5 12 12 C 1.76196 * 107.21741 * 94.94549 * 9 8 5 13 13 C 1.38208 * 119.99807 * 194.17361 * 12 9 8 14 14 C 1.50703 * 120.00085 * 359.97438 * 13 12 9 15 15 O 1.42898 * 109.46869 * 75.91079 * 14 13 12 16 16 Si 1.86302 * 109.46907 * 195.91105 * 14 13 12 17 17 C 1.38257 * 119.99973 * 180.02562 * 13 12 9 18 18 C 1.38211 * 120.00203 * 359.86620 * 17 13 12 19 19 C 1.38256 * 119.99967 * 0.08948 * 18 17 13 20 20 C 1.38214 * 119.99964 * 0.02562 * 19 18 17 21 21 C 1.52847 * 112.68030 * 56.60815 * 5 4 3 22 22 C 1.52965 * 109.43573 * 120.22150 * 2 1 3 23 23 H 1.08999 * 109.46986 * 59.99844 * 1 2 3 24 24 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47007 * 299.99739 * 1 2 3 26 26 H 1.09004 * 109.39769 * 240.10724 * 2 1 3 27 27 H 1.09003 * 109.47621 * 61.69553 * 3 2 1 28 28 H 1.09005 * 109.48135 * 301.68701 * 3 2 1 29 29 H 1.08996 * 109.51457 * 182.05575 * 4 3 2 30 30 H 1.09003 * 109.55275 * 61.93360 * 4 3 2 31 31 H 1.09005 * 114.21444 * 332.76157 * 6 5 4 32 32 H 1.09004 * 114.21891 * 105.62787 * 6 5 4 33 33 H 1.08997 * 113.45637 * 271.27762 * 7 6 5 34 34 H 1.08998 * 113.55393 * 140.77625 * 7 6 5 35 35 H 1.08997 * 109.47275 * 315.90831 * 14 13 12 36 36 H 0.96704 * 113.99687 * 175.00091 * 15 14 13 37 37 H 1.48502 * 109.99768 * 178.67824 * 16 14 13 38 38 H 1.48499 * 110.00268 * 299.99757 * 16 14 13 39 39 H 1.07998 * 119.99970 * 179.97438 * 17 13 12 40 40 H 1.08003 * 120.00170 * 180.36638 * 18 17 13 41 41 H 1.08001 * 120.00715 * 179.97438 * 19 18 17 42 42 H 1.07997 * 120.00653 * 179.97438 * 20 19 18 43 43 H 1.09003 * 109.51711 * 63.32442 * 21 5 4 44 44 H 1.09002 * 109.51865 * 183.48320 * 21 5 4 45 45 H 1.09001 * 109.47228 * 298.31326 * 22 2 1 46 46 H 1.08998 * 109.47727 * 58.31811 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0391 1.4425 0.0000 4 6 3.5697 1.4428 -0.0425 5 6 4.1066 0.6665 1.1597 6 6 3.9760 1.4276 2.4832 7 6 5.3584 0.8126 2.7612 8 7 5.5644 0.7504 1.3059 9 16 6.8673 0.7624 0.2836 10 8 6.4107 0.2351 -0.9545 11 8 7.9537 0.2066 1.0118 12 6 7.2798 2.4490 -0.0157 13 6 8.1322 2.7783 -1.0526 14 6 8.7093 1.6949 -1.9267 15 8 7.7082 1.2324 -2.8355 16 14 10.1535 2.3752 -2.8871 17 6 8.4564 4.1017 -1.2871 18 6 7.9258 5.0956 -0.4865 19 6 7.0724 4.7663 0.5501 20 6 6.7502 3.4431 0.7861 21 6 3.5697 -0.7630 1.2257 22 6 2.0390 -0.7261 1.2464 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8920 -0.5124 -0.8914 27 1 1.7006 1.9473 0.9048 28 1 1.6511 1.9649 -0.8745 29 1 3.9347 2.4692 -0.0057 30 1 3.9092 0.9685 -0.9634 31 1 3.9781 2.5125 2.3772 32 1 3.1851 1.0575 3.1357 33 1 5.3097 -0.1679 3.2348 34 1 6.0436 1.4923 3.2677 35 1 9.0455 0.8659 -1.3038 36 1 8.0301 0.5878 -3.4805 37 1 10.7514 1.3081 -3.7292 38 1 9.7084 3.5061 -3.7405 39 1 9.1228 4.3591 -2.0971 40 1 8.1744 6.1299 -0.6735 41 1 6.6580 5.5427 1.1760 42 1 6.0838 3.1856 1.5961 43 1 3.9085 -1.3200 0.3522 44 1 3.9344 -1.2476 2.1314 45 1 1.7003 -0.1984 2.1380 46 1 1.6510 -1.7446 1.2576 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17514094_2726874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:46 Heat of formation + Delta-G solvation = -35.707514 kcal Electronic energy + Delta-G solvation = -29651.140565 eV Core-core repulsion = 25828.568417 eV Total energy + Delta-G solvation = -3822.572149 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.138 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77545 -40.66752 -38.38050 -37.92830 -37.70284 -36.97710 -33.08336 -32.51760 -32.04051 -31.77455 -29.55889 -27.07300 -26.65040 -24.46240 -24.21002 -23.23437 -22.86012 -21.89849 -20.65268 -19.58224 -18.85203 -18.74234 -18.10899 -17.23987 -17.10987 -16.88240 -16.52591 -15.88316 -15.66423 -15.33726 -15.28008 -15.22195 -15.16826 -14.92032 -14.39315 -14.15494 -14.04330 -13.86332 -13.62652 -13.54119 -13.34121 -13.28088 -13.23418 -13.17530 -12.98364 -12.79732 -12.46880 -12.27190 -12.05299 -12.02021 -11.96068 -11.69126 -11.52185 -11.37448 -11.22729 -10.93044 -10.73272 -10.48175 -10.13226 -10.08442 -5.08682 -0.82942 -0.33021 0.07293 1.03384 1.45356 1.72396 1.75422 2.31881 2.52637 3.02286 3.20223 3.38309 3.52933 3.57798 3.65572 3.77217 3.79680 3.80279 3.99228 4.01051 4.10379 4.15531 4.18640 4.27492 4.33481 4.47192 4.51938 4.52300 4.54336 4.64739 4.71522 4.71902 4.75923 4.89202 4.91975 4.95706 5.00533 5.04323 5.06504 5.12314 5.13701 5.22465 5.23486 5.27814 5.29417 5.40230 5.47308 5.53026 5.64489 5.72346 6.38054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.101 4.101 4 C -0.133 4.133 5 C 0.184 3.816 6 C -0.126 4.126 7 C 0.113 3.887 8 N -1.046 6.046 9 S 2.708 3.292 10 O -0.961 6.961 11 O -0.998 6.998 12 C -0.666 4.666 13 C -0.001 4.001 14 C -0.150 4.150 15 O -0.528 6.528 16 Si 0.791 3.209 17 C -0.144 4.144 18 C -0.060 4.060 19 C -0.129 4.129 20 C -0.038 4.038 21 C -0.124 4.124 22 C -0.103 4.103 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.389 0.611 37 H -0.276 1.276 38 H -0.262 1.262 39 H 0.152 0.848 40 H 0.170 0.830 41 H 0.170 0.830 42 H 0.159 0.841 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 6.258 5.533 8.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.139 4.139 4 C -0.171 4.171 5 C 0.098 3.902 6 C -0.166 4.166 7 C -0.011 4.011 8 N -0.887 5.887 9 S 2.804 3.196 10 O -0.951 6.951 11 O -0.989 6.989 12 C -0.754 4.754 13 C -0.003 4.003 14 C -0.256 4.256 15 O -0.336 6.336 16 Si 0.690 3.310 17 C -0.163 4.163 18 C -0.077 4.077 19 C -0.147 4.147 20 C -0.056 4.056 21 C -0.163 4.163 22 C -0.141 4.141 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.239 0.761 37 H -0.202 1.202 38 H -0.188 1.188 39 H 0.169 0.831 40 H 0.188 0.812 41 H 0.188 0.812 42 H 0.176 0.824 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.178 6.062 4.605 7.918 hybrid contribution -0.260 -0.905 -1.175 1.506 sum -2.439 5.157 3.431 6.657 Atomic orbital electron populations 1.21800 0.94245 1.01907 1.02262 1.21175 0.96174 0.96152 0.98256 1.21489 0.92518 0.96548 1.03316 1.21883 0.97927 1.00126 0.97203 1.21452 0.75610 0.96030 0.97099 1.23699 0.97045 1.01439 0.94390 1.22937 0.97513 1.02492 0.78192 1.60098 1.19363 1.89274 1.19936 1.01096 0.71936 0.74373 0.72219 1.93598 1.80852 1.77635 1.43056 1.93546 1.54176 1.77257 1.73916 1.30639 1.12127 1.24965 1.07674 1.18976 0.93915 0.95070 0.92301 1.25741 1.02835 0.99092 0.97977 1.86722 1.35234 1.64045 1.47642 0.93681 0.77533 0.79189 0.80551 1.21507 1.01850 0.91420 1.01484 1.21909 0.92706 1.00892 0.92220 1.21811 0.97934 0.96509 0.98477 1.21300 0.95317 0.92877 0.96137 1.21800 0.97373 0.94674 1.02470 1.21549 0.92628 1.01262 0.98616 0.93063 0.92766 0.91364 0.93292 0.89219 0.91923 0.90778 0.93603 0.86787 0.86636 0.88659 0.88724 0.92536 0.76079 1.20179 1.18800 0.83110 0.81238 0.81211 0.82355 0.93744 0.89684 0.89136 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.39 9.19 71.98 0.66 1.05 16 2 C -0.10 0.09 2.67 -10.82 -0.03 0.06 16 3 C -0.10 0.19 5.12 30.62 0.16 0.35 16 4 C -0.13 -0.26 5.28 30.58 0.16 -0.10 16 5 C 0.18 -0.04 1.02 -0.05 0.00 -0.04 16 6 C -0.13 1.01 7.09 30.96 0.22 1.23 16 7 C 0.11 -0.45 7.84 82.96 0.65 0.20 16 8 N -1.05 -3.70 2.96 -508.45 -1.51 -5.21 16 9 S 2.71 32.54 4.93 -56.49 -0.28 32.26 16 10 O -0.96 -17.13 14.75 -119.33 -1.76 -18.89 16 11 O -1.00 -17.73 17.84 -128.00 -2.28 -20.01 16 12 C -0.67 -5.55 5.83 22.27 0.13 -5.42 16 13 C 0.00 -0.01 5.28 -19.87 -0.10 -0.11 16 14 C -0.15 -1.35 1.91 71.24 0.14 -1.22 16 15 O -0.53 -6.36 10.69 -127.91 -1.37 -7.73 16 16 Si 0.79 1.30 30.15 68.60 2.07 3.36 16 17 C -0.14 -0.38 8.66 22.27 0.19 -0.19 16 18 C -0.06 0.14 10.05 22.27 0.22 0.36 16 19 C -0.13 0.39 10.05 22.27 0.22 0.61 16 20 C -0.04 -0.04 9.57 22.27 0.21 0.17 16 21 C -0.12 -0.05 5.25 30.59 0.16 0.12 16 22 C -0.10 0.33 5.11 30.62 0.16 0.48 16 23 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.07 -0.33 8.14 -2.38 -0.02 -0.35 16 26 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 27 H 0.09 -0.55 7.94 -2.39 -0.02 -0.57 16 28 H 0.06 -0.05 8.14 -2.38 -0.02 -0.07 16 29 H 0.07 0.03 8.12 -2.39 -0.02 0.01 16 30 H 0.05 0.42 7.66 -2.39 -0.02 0.41 16 31 H 0.11 -1.27 7.89 -2.38 -0.02 -1.29 16 32 H 0.12 -1.39 7.35 -2.38 -0.02 -1.40 16 33 H 0.10 -0.51 7.28 -2.39 -0.02 -0.52 16 34 H 0.09 -0.67 8.09 -2.39 -0.02 -0.69 16 35 H 0.06 0.59 7.09 -2.39 -0.02 0.57 16 36 H 0.39 1.82 8.62 -74.05 -0.64 1.18 16 37 H -0.28 -1.39 7.11 99.48 0.71 -0.68 16 38 H -0.26 -1.01 6.72 99.48 0.67 -0.34 16 39 H 0.15 -0.17 4.91 -2.91 -0.01 -0.18 16 40 H 0.17 -1.58 8.06 -2.91 -0.02 -1.60 16 41 H 0.17 -1.73 8.06 -2.91 -0.02 -1.75 16 42 H 0.16 -0.78 6.51 -2.91 -0.02 -0.80 16 43 H 0.04 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.08 -0.19 7.01 -2.39 -0.02 -0.20 16 45 H 0.09 -0.66 7.35 -2.39 -0.02 -0.68 16 46 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -26.05 363.98 -1.63 -27.69 By element: Atomic # 1 Polarization: -9.37 SS G_CDS: 0.34 Total: -9.03 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 3.15 Total: -2.44 kcal Atomic # 7 Polarization: -3.70 SS G_CDS: -1.51 Total: -5.21 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -5.41 Total: -46.63 kcal Atomic # 14 Polarization: 1.30 SS G_CDS: 2.07 Total: 3.36 kcal Atomic # 16 Polarization: 32.54 SS G_CDS: -0.28 Total: 32.26 kcal Total: -26.05 -1.63 -27.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17514094_2726874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.021 kcal (2) G-P(sol) polarization free energy of solvation -26.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds