Wall clock time and date at job start Mon Mar 8 2021 11:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42909 * 1 3 3 Si 1.86299 * 109.46984 * 2 1 4 4 C 1.50700 * 109.46929 * 240.00271 * 2 1 3 5 5 C 1.33389 * 125.20192 * 313.62930 * 4 2 1 6 6 S 1.76204 * 122.54129 * 0.02562 * 5 4 2 7 7 O 1.42093 * 106.40413 * 180.24600 * 6 5 4 8 8 O 1.42104 * 106.39832 * 313.16622 * 6 5 4 9 9 N 1.65597 * 107.21981 * 66.70395 * 6 5 4 10 10 C 1.46506 * 119.99981 * 65.74182 * 9 6 5 11 11 H 1.09005 * 112.84717 * 345.56374 * 10 9 6 12 12 C 1.53777 * 113.61148 * 116.86342 * 10 9 6 13 13 C 1.53785 * 87.08039 * 89.12169 * 12 10 9 14 14 H 1.09006 * 113.60966 * 270.88264 * 13 12 10 15 15 C 1.52998 * 113.69105 * 139.98927 * 13 12 10 16 16 N 1.47315 * 110.59439 * 196.63636 * 15 13 12 17 17 C 1.34531 * 106.61476 * 241.47185 * 16 15 13 18 18 O 1.21540 * 123.76447 * 180.02562 * 17 16 15 19 19 N 1.33783 * 112.46159 * 0.02562 * 17 16 15 20 20 C 1.34764 * 111.64607 * 359.97438 * 19 17 16 21 21 O 1.21242 * 127.15907 * 179.97438 * 20 19 17 22 22 C 1.53779 * 87.08195 * 25.42892 * 13 12 10 23 23 C 1.38427 * 114.92206 * 180.02562 * 5 4 2 24 24 C 1.33380 * 114.91852 * 0.02562 * 23 5 4 25 25 S 1.75879 * 125.20494 * 133.95529 * 4 2 1 26 26 H 0.96701 * 113.99573 * 60.90172 * 1 2 3 27 27 H 1.08993 * 109.46898 * 120.00125 * 2 1 3 28 28 H 1.48501 * 109.99993 * 59.99998 * 3 2 1 29 29 H 1.48500 * 109.99929 * 181.31793 * 3 2 1 30 30 H 0.97004 * 120.00375 * 245.74438 * 9 6 5 31 31 H 1.08997 * 113.61461 * 203.66719 * 12 10 9 32 32 H 1.09003 * 113.61990 * 334.57113 * 12 10 9 33 33 H 1.08994 * 110.53551 * 319.63100 * 15 13 12 34 34 H 0.96994 * 126.69402 * 61.45923 * 16 15 13 35 35 H 0.97005 * 124.18196 * 179.97438 * 19 17 16 36 36 H 1.08998 * 113.61671 * 220.02087 * 22 13 12 37 37 H 1.08996 * 113.61329 * 89.11346 * 22 13 12 38 38 H 1.08001 * 122.54002 * 180.02562 * 23 5 4 39 39 H 1.07997 * 125.20470 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.4786 -1.8814 -1.6810 6 16 0.1948 -2.7762 -0.8711 7 8 -0.0087 -3.9606 -1.6293 8 8 0.5228 -2.7852 0.5116 9 7 -1.1923 -1.8835 -1.0169 10 6 -1.7895 -1.6683 -2.3373 11 1 -1.1133 -1.9213 -3.1540 12 6 -3.1930 -2.2791 -2.4854 13 6 -3.7441 -0.9432 -1.9596 14 1 -3.8341 -0.9050 -0.8739 15 6 -5.0117 -0.4758 -2.6777 16 7 -5.2569 0.9535 -2.4186 17 6 -6.4433 1.0323 -1.7893 18 8 -6.9489 2.0773 -1.4293 19 7 -7.0044 -0.1680 -1.6041 20 6 -6.2350 -1.1579 -2.0981 21 8 -6.4716 -2.3469 -2.0817 22 6 -2.4576 -0.2922 -2.4943 23 6 2.0937 -2.3404 -2.8331 24 6 3.0462 -1.5424 -3.3177 25 16 3.2098 -0.1261 -2.2877 26 1 -0.3933 0.4296 -0.7719 27 1 1.7924 -0.5138 0.8899 28 1 1.5615 2.4679 1.2085 29 1 3.5346 1.7703 -0.0321 30 1 -1.6094 -1.5030 -0.2281 31 1 -3.4707 -2.4898 -3.5181 32 1 -3.3760 -3.1204 -1.8168 33 1 -4.9370 -0.6666 -3.7482 34 1 -4.6762 1.6934 -2.6554 35 1 -7.8595 -0.3084 -1.1680 36 1 -2.0468 0.4707 -1.8329 37 1 -2.5342 0.0403 -3.5295 38 1 1.8228 -3.2740 -3.3037 39 1 3.6307 -1.7381 -4.2046 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17522900_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:47:02 Heat of formation + Delta-G solvation = -78.500055 kcal Electronic energy + Delta-G solvation = -30813.697486 eV Core-core repulsion = 26364.828711 eV Total energy + Delta-G solvation = -4448.868775 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.053 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.36307 -40.33779 -39.66088 -39.53004 -38.38859 -37.43391 -37.17116 -36.93094 -34.92071 -33.38744 -31.78544 -29.19151 -27.50482 -26.52769 -25.00003 -24.35704 -23.64558 -22.48942 -21.80397 -20.75574 -19.92543 -19.35544 -19.28509 -18.70966 -18.04239 -17.86484 -17.54801 -17.06617 -16.92078 -16.80369 -16.39691 -16.36523 -16.08459 -15.72212 -15.50630 -15.34020 -15.13472 -15.05867 -14.35312 -14.12156 -14.00287 -13.85820 -13.77492 -13.31637 -13.25835 -13.17112 -13.13551 -12.82112 -12.62186 -12.33363 -12.21424 -12.09819 -11.72279 -11.58369 -11.46759 -11.36080 -11.04786 -10.86537 -10.39521 -10.25939 -10.15089 -9.73858 -5.14863 -0.67784 -0.48236 0.37660 0.58595 0.66206 1.10667 1.14272 1.47843 1.56677 1.89672 1.98966 2.12429 2.24301 2.74003 2.94056 3.20779 3.33396 3.49777 3.53100 3.72164 3.77654 3.90972 4.10136 4.14755 4.23913 4.31872 4.40098 4.41034 4.47981 4.74937 4.85796 4.96466 4.98582 5.05527 5.11424 5.16048 5.18782 5.25800 5.60217 5.87696 5.95040 6.23211 6.43567 6.57116 7.17161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.072 4.072 3 Si 0.757 3.243 4 C -0.104 4.104 5 C -0.667 4.667 6 S 2.725 3.275 7 O -0.992 6.992 8 O -0.991 6.991 9 N -1.074 6.074 10 C 0.116 3.884 11 H 0.117 0.883 12 C -0.147 4.147 13 C -0.114 4.114 14 H 0.095 0.905 15 C 0.113 3.887 16 N -0.695 5.695 17 C 0.701 3.299 18 O -0.590 6.590 19 N -0.681 5.681 20 C 0.522 3.478 21 O -0.496 6.496 22 C -0.119 4.119 23 C -0.095 4.095 24 C -0.206 4.206 25 S 0.180 5.820 26 H 0.398 0.602 27 H 0.128 0.872 28 H -0.265 1.265 29 H -0.262 1.262 30 H 0.430 0.570 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.165 0.835 34 H 0.455 0.545 35 H 0.435 0.565 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.159 0.841 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.520 6.448 -8.121 10.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.183 4.183 3 Si 0.657 3.343 4 C -0.225 4.225 5 C -0.769 4.769 6 S 2.813 3.187 7 O -0.982 6.982 8 O -0.981 6.981 9 N -0.838 5.838 10 C 0.009 3.991 11 H 0.135 0.865 12 C -0.187 4.187 13 C -0.134 4.134 14 H 0.114 0.886 15 C 0.005 3.995 16 N -0.360 5.360 17 C 0.400 3.600 18 O -0.467 6.467 19 N -0.351 5.351 20 C 0.310 3.690 21 O -0.367 6.367 22 C -0.158 4.158 23 C -0.123 4.123 24 C -0.342 4.342 25 S 0.444 5.556 26 H 0.251 0.749 27 H 0.146 0.854 28 H -0.191 1.191 29 H -0.188 1.188 30 H 0.270 0.730 31 H 0.134 0.866 32 H 0.076 0.924 33 H 0.182 0.818 34 H 0.303 0.697 35 H 0.277 0.723 36 H 0.124 0.876 37 H 0.152 0.848 38 H 0.176 0.824 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.907 7.032 -6.801 10.944 hybrid contribution -1.029 -1.465 0.686 1.917 sum 3.878 5.567 -6.115 9.134 Atomic orbital electron populations 1.86565 1.15323 1.82267 1.50247 1.25175 0.86541 1.11713 0.94851 0.94127 0.79470 0.73325 0.87365 1.25177 0.99887 0.97085 1.00371 1.29692 1.24782 1.09962 1.12499 1.00718 0.73113 0.72779 0.72040 1.93553 1.85754 1.45304 1.73577 1.93544 1.84291 1.86968 1.33330 1.55112 1.40836 1.72428 1.15415 1.21852 0.95058 0.98713 0.83487 0.86513 1.23555 0.95456 0.96149 1.03580 1.22830 0.91855 0.98199 1.00530 0.88648 1.22328 0.92929 0.79905 1.04388 1.45409 1.20294 1.09155 1.61165 1.16014 0.82498 0.82775 0.78674 1.91071 1.67731 1.30747 1.57142 1.44429 1.25132 1.08326 1.57253 1.21375 0.85712 0.85564 0.76388 1.90879 1.75619 1.14686 1.55504 1.23501 0.91633 0.95557 1.05063 1.19870 0.96549 1.01770 0.94063 1.26218 1.04018 0.98270 1.05646 1.84454 1.32682 1.21890 1.16612 0.74944 0.85445 1.19056 1.18814 0.73045 0.86567 0.92356 0.81804 0.69720 0.72305 0.87638 0.84823 0.82383 0.78600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 4.09 8.58 -144.90 -1.24 2.85 16 2 C -0.07 0.29 2.08 71.24 0.15 0.44 16 3 Si 0.76 -5.10 31.08 68.60 2.13 -2.97 16 4 C -0.10 0.35 5.74 24.59 0.14 0.49 16 5 C -0.67 0.60 5.78 21.22 0.12 0.72 16 6 S 2.72 8.23 4.88 -56.49 -0.28 7.96 16 7 O -0.99 -9.14 17.09 -128.00 -2.19 -11.33 16 8 O -0.99 -10.66 16.67 -124.42 -2.07 -12.73 16 9 N -1.07 6.64 3.69 -167.19 -0.62 6.02 16 10 C 0.12 -1.33 4.43 45.51 0.20 -1.13 16 11 H 0.12 -1.51 8.05 -2.38 -0.02 -1.52 16 12 C -0.15 1.33 7.44 31.12 0.23 1.56 16 13 C -0.11 1.44 3.21 -10.27 -0.03 1.41 16 14 H 0.10 -0.98 8.11 -2.38 -0.02 -1.00 16 15 C 0.11 -1.32 3.39 44.37 0.15 -1.17 16 16 N -0.69 7.49 6.15 -459.61 -2.83 4.66 16 17 C 0.70 -0.89 8.99 179.44 1.61 0.72 16 18 O -0.59 -4.96 18.04 -3.84 -0.07 -5.03 16 19 N -0.68 1.97 5.70 -441.12 -2.52 -0.55 16 20 C 0.52 -1.59 8.14 87.94 0.72 -0.87 16 21 O -0.50 -2.26 18.02 -2.91 -0.05 -2.31 16 22 C -0.12 2.21 7.32 31.12 0.23 2.44 16 23 C -0.09 0.20 9.70 21.22 0.21 0.41 16 24 C -0.21 1.13 11.23 66.72 0.75 1.88 16 25 S 0.18 -1.03 20.71 -56.49 -1.17 -2.20 16 26 H 0.40 -6.82 6.69 -74.06 -0.50 -7.31 16 27 H 0.13 0.01 7.75 -2.39 -0.02 0.00 16 28 H -0.27 0.11 7.11 99.48 0.71 0.81 16 29 H -0.26 0.58 7.11 99.48 0.71 1.29 16 30 H 0.43 -3.34 7.65 -96.74 -0.74 -4.08 16 31 H 0.12 -1.39 8.04 -2.39 -0.02 -1.41 16 32 H 0.06 -0.16 8.14 -2.39 -0.02 -0.17 16 33 H 0.16 -2.82 8.06 -2.39 -0.02 -2.84 16 34 H 0.46 -7.19 8.96 -92.71 -0.83 -8.03 16 35 H 0.43 -1.74 8.96 -92.70 -0.83 -2.57 16 36 H 0.11 -2.34 6.51 -2.39 -0.02 -2.35 16 37 H 0.13 -3.17 8.10 -2.39 -0.02 -3.19 16 38 H 0.16 -0.40 7.74 -2.91 -0.02 -0.42 16 39 H 0.20 -2.03 8.06 -2.91 -0.02 -2.06 16 Total: 0.00 -35.47 353.10 -8.11 -43.58 By element: Atomic # 1 Polarization: -33.17 SS G_CDS: -1.68 Total: -34.85 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 4.47 Total: 6.90 kcal Atomic # 7 Polarization: 16.10 SS G_CDS: -5.96 Total: 10.14 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -5.63 Total: -28.55 kcal Atomic # 14 Polarization: -5.10 SS G_CDS: 2.13 Total: -2.97 kcal Atomic # 16 Polarization: 7.20 SS G_CDS: -1.45 Total: 5.75 kcal Total: -35.47 -8.11 -43.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17522900_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.925 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds