Wall clock time and date at job start Mon Mar 8 2021 11:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.46938 * 2 1 4 4 C 1.50706 * 109.46858 * 119.99509 * 2 1 3 5 5 C 1.33387 * 125.20204 * 65.29364 * 4 2 1 6 6 C 1.38418 * 114.92004 * 180.20527 * 5 4 2 7 7 S 1.76203 * 122.53927 * 179.76087 * 6 5 4 8 8 O 1.42104 * 106.40146 * 156.19522 * 7 6 5 9 9 O 1.42095 * 106.40229 * 23.27779 * 7 6 5 10 10 N 1.65602 * 107.21635 * 269.73357 * 7 6 5 11 11 C 1.46498 * 119.99612 * 65.28001 * 10 7 6 12 12 H 1.08997 * 112.84847 * 345.91598 * 11 10 7 13 13 C 1.53783 * 113.61625 * 117.22228 * 11 10 7 14 14 C 1.53784 * 87.07769 * 89.11584 * 13 11 10 15 15 H 1.09005 * 113.61506 * 270.88188 * 14 13 11 16 16 C 1.53000 * 113.69083 * 139.99484 * 14 13 11 17 17 N 1.47316 * 110.60054 * 196.63456 * 16 14 13 18 18 C 1.34522 * 106.61960 * 241.47346 * 17 16 14 19 19 O 1.21537 * 123.76959 * 179.97438 * 18 17 16 20 20 N 1.33791 * 112.45880 * 359.97438 * 18 17 16 21 21 C 1.34761 * 111.64457 * 0.02562 * 20 18 17 22 22 O 1.21237 * 127.15994 * 179.97438 * 21 20 18 23 23 C 1.53780 * 87.08590 * 25.43289 * 14 13 11 24 24 C 1.33389 * 114.92375 * 359.48976 * 6 5 4 25 25 S 1.75884 * 125.20315 * 244.97676 * 4 2 1 26 26 H 0.96694 * 114.00628 * 299.99659 * 1 2 3 27 27 H 1.08994 * 109.47704 * 240.00181 * 2 1 3 28 28 H 1.48495 * 109.99944 * 299.99625 * 3 2 1 29 29 H 1.48501 * 109.99831 * 61.31575 * 3 2 1 30 30 H 1.08000 * 122.54289 * 359.97036 * 5 4 2 31 31 H 0.97001 * 119.99942 * 244.99525 * 10 7 6 32 32 H 1.08992 * 113.61543 * 203.66000 * 13 11 10 33 33 H 1.08999 * 113.61520 * 334.57086 * 13 11 10 34 34 H 1.08994 * 110.53381 * 319.63244 * 16 14 13 35 35 H 0.97003 * 126.68687 * 61.45278 * 17 16 14 36 36 H 0.97004 * 124.17535 * 179.97438 * 20 18 17 37 37 H 1.08994 * 113.61637 * 220.02476 * 23 14 13 38 38 H 1.08996 * 113.61469 * 89.11167 * 23 14 13 39 39 H 1.08002 * 125.20784 * 180.28673 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.7581 -2.0062 1.4949 6 6 2.3055 -2.4356 2.6916 7 16 2.1893 -4.1055 3.2418 8 8 3.2720 -4.3084 4.1396 9 8 1.9844 -4.8975 2.0799 10 7 0.8053 -4.2296 4.1426 11 6 -0.5014 -4.0420 3.5072 12 1 -0.4298 -3.5923 2.5169 13 6 -1.3947 -5.2929 3.5547 14 6 -1.9167 -4.7724 4.9044 15 1 -1.3315 -5.1118 5.7591 16 6 -3.4215 -4.9695 5.0989 17 7 -3.9181 -4.1198 6.1950 18 6 -4.4119 -4.9497 7.1316 19 8 -4.9042 -4.5723 8.1767 20 7 -4.3005 -6.2368 6.7840 21 6 -3.7179 -6.3771 5.5770 22 8 -3.4801 -7.4135 4.9946 23 6 -1.5377 -3.3635 4.4186 24 6 2.9325 -1.4908 3.3940 25 16 2.8424 0.0409 2.5341 26 1 -0.3934 0.4416 0.7650 27 1 1.7924 -0.5138 -0.8899 28 1 1.5615 2.4679 -1.2085 29 1 1.5877 2.4586 1.2242 30 1 1.2274 -2.6694 0.8278 31 1 0.8596 -4.4306 5.0900 32 1 -2.1539 -5.3171 2.7730 33 1 -0.8362 -6.2256 3.6329 34 1 -3.9575 -4.7582 4.1737 35 1 -3.8935 -3.1509 6.2340 36 1 -4.6012 -6.9776 7.3334 37 1 -1.0946 -2.7388 5.1940 38 1 -2.3359 -2.8603 3.8729 39 1 3.4211 -1.6430 4.3451 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17522900_15065232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:47:07 Heat of formation + Delta-G solvation = -75.935173 kcal Electronic energy + Delta-G solvation = -29662.038470 eV Core-core repulsion = 25213.280916 eV Total energy + Delta-G solvation = -4448.757554 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.053 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.54255 -40.67557 -39.66229 -39.61780 -38.28904 -37.77423 -37.24927 -36.92670 -35.17886 -33.75723 -31.96652 -29.51278 -27.34692 -27.03091 -25.35041 -24.99355 -23.82058 -22.75002 -21.61660 -21.15108 -20.28203 -19.49075 -19.35594 -18.72355 -18.04393 -18.01636 -17.75453 -17.71476 -17.26523 -17.08471 -16.55690 -16.53057 -16.25333 -15.89001 -15.79187 -15.54383 -15.20783 -15.05223 -14.57552 -14.33850 -14.26348 -14.16664 -13.93403 -13.72342 -13.51149 -13.22023 -13.10321 -13.01236 -12.58700 -12.55372 -12.46835 -12.38336 -11.96029 -11.83387 -11.64801 -11.49233 -11.26202 -10.94840 -10.77309 -10.65209 -10.35644 -9.97537 -5.23389 -0.86512 -0.58361 0.20084 0.44969 0.46408 0.88629 1.02805 1.26350 1.35930 1.73231 1.88487 1.89902 1.95219 2.61969 2.66810 3.04968 3.07775 3.17672 3.27488 3.33409 3.43079 3.49770 3.66218 3.71642 3.83931 3.96369 4.11736 4.16367 4.31468 4.35432 4.40656 4.49316 4.59304 4.65589 4.77656 4.86473 4.90577 4.94744 5.09151 5.57428 5.68921 5.76214 6.11570 6.23691 7.00161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.034 4.034 3 Si 0.650 3.350 4 C -0.226 4.226 5 C -0.045 4.045 6 C -0.688 4.688 7 S 2.709 3.291 8 O -0.953 6.953 9 O -0.943 6.943 10 N -1.098 6.098 11 C 0.129 3.871 12 H 0.109 0.891 13 C -0.137 4.137 14 C -0.116 4.116 15 H 0.103 0.897 16 C 0.102 3.898 17 N -0.721 5.721 18 C 0.703 3.297 19 O -0.541 6.541 20 N -0.681 5.681 21 C 0.526 3.474 22 O -0.457 6.457 23 C -0.137 4.137 24 C -0.082 4.082 25 S 0.161 5.839 26 H 0.377 0.623 27 H 0.131 0.869 28 H -0.232 1.232 29 H -0.239 1.239 30 H 0.158 0.842 31 H 0.420 0.580 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.442 0.558 36 H 0.434 0.566 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 5.533 -1.122 5.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.146 4.146 3 Si 0.549 3.451 4 C -0.343 4.343 5 C -0.074 4.074 6 C -0.787 4.787 7 S 2.796 3.204 8 O -0.943 6.943 9 O -0.933 6.933 10 N -0.856 5.856 11 C 0.021 3.979 12 H 0.127 0.873 13 C -0.177 4.177 14 C -0.135 4.135 15 H 0.121 0.879 16 C -0.007 4.007 17 N -0.386 5.386 18 C 0.402 3.598 19 O -0.414 6.414 20 N -0.353 5.353 21 C 0.311 3.689 22 O -0.325 6.325 23 C -0.177 4.177 24 C -0.221 4.221 25 S 0.425 5.575 26 H 0.225 0.775 27 H 0.148 0.852 28 H -0.155 1.155 29 H -0.163 1.163 30 H 0.175 0.825 31 H 0.255 0.745 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.150 0.850 35 H 0.287 0.713 36 H 0.277 0.723 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.281 6.634 -1.611 6.946 hybrid contribution -1.797 -0.872 1.010 2.238 sum -0.516 5.762 -0.600 5.816 Atomic orbital electron populations 1.86653 1.17044 1.79857 1.49179 1.24403 0.83915 1.10185 0.96113 0.95105 0.91912 0.74901 0.83226 1.25014 1.08687 0.98296 1.02342 1.19634 0.98264 0.94887 0.94624 1.30031 1.15818 1.26366 1.06513 1.01676 0.72145 0.73188 0.73422 1.93628 1.50894 1.84975 1.64831 1.93629 1.85090 1.65174 1.49391 1.55410 1.19831 1.87244 1.23115 1.21588 0.82137 0.97477 0.96734 0.87286 1.23466 0.99325 0.99122 0.95807 1.22850 0.91680 0.98944 1.00074 0.87880 1.22191 0.97467 0.87756 0.93326 1.45519 1.64376 1.09403 1.19263 1.15875 0.78966 0.81106 0.83814 1.91101 1.48384 1.77947 1.23934 1.44371 1.58871 1.10049 1.21980 1.20796 0.75909 0.91403 0.80764 1.90894 1.49573 1.32444 1.59565 1.23401 0.98969 0.95472 0.99822 1.25923 0.97809 0.95625 1.02763 1.84500 1.50100 1.10285 1.12633 0.77548 0.85153 1.15515 1.16307 0.82488 0.74480 0.87793 0.89319 0.84991 0.71348 0.72292 0.89760 0.87969 0.79708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.70 12.88 -35.23 -0.45 0.25 16 2 C -0.03 0.07 2.96 36.01 0.11 0.18 16 3 Si 0.65 -1.58 30.98 -169.99 -5.27 -6.84 16 4 C -0.23 0.39 5.70 -36.00 -0.21 0.19 16 5 C -0.05 0.05 9.54 -41.21 -0.39 -0.34 16 6 C -0.69 0.84 5.87 -41.21 -0.24 0.60 16 7 S 2.71 -0.75 5.74 -107.50 -0.62 -1.36 16 8 O -0.95 -2.51 17.64 -57.17 -1.01 -3.52 16 9 O -0.94 -2.74 17.38 -57.17 -0.99 -3.74 16 10 N -1.10 3.85 5.73 -4.20 -0.02 3.82 16 11 C 0.13 -0.58 4.43 -67.11 -0.30 -0.87 16 12 H 0.11 -0.55 8.00 -51.93 -0.42 -0.96 16 13 C -0.14 0.54 7.44 -25.92 -0.19 0.35 16 14 C -0.12 0.57 3.20 -89.81 -0.29 0.29 16 15 H 0.10 -0.47 8.11 -51.93 -0.42 -0.89 16 16 C 0.10 -0.45 3.39 -68.20 -0.23 -0.68 16 17 N -0.72 2.76 6.15 -59.19 -0.36 2.40 16 18 C 0.70 -0.14 8.99 -88.02 -0.79 -0.94 16 19 O -0.54 -2.27 18.04 5.33 0.10 -2.17 16 20 N -0.68 1.04 5.70 -15.79 -0.09 0.95 16 21 C 0.53 -0.72 8.14 -10.56 -0.09 -0.80 16 22 O -0.46 -0.84 18.02 5.59 0.10 -0.74 16 23 C -0.14 0.87 7.34 -25.92 -0.19 0.68 16 24 C -0.08 0.17 10.70 29.04 0.31 0.48 16 25 S 0.16 -0.39 20.60 -107.50 -2.21 -2.60 16 26 H 0.38 -1.66 8.70 45.56 0.40 -1.26 16 27 H 0.13 -0.36 7.96 -51.93 -0.41 -0.77 16 28 H -0.23 -0.11 7.11 56.52 0.40 0.29 16 29 H -0.24 0.24 7.11 56.52 0.40 0.64 16 30 H 0.16 -0.24 7.96 -52.49 -0.42 -0.66 16 31 H 0.42 -2.10 8.78 -34.47 -0.30 -2.40 16 32 H 0.10 -0.51 8.04 -51.93 -0.42 -0.93 16 33 H 0.09 -0.20 8.14 -51.93 -0.42 -0.62 16 34 H 0.13 -0.84 8.06 -51.93 -0.42 -1.26 16 35 H 0.44 -2.49 8.96 -40.82 -0.37 -2.85 16 36 H 0.43 -1.13 8.96 -40.82 -0.37 -1.49 16 37 H 0.08 -0.55 8.14 -51.93 -0.42 -0.97 16 38 H 0.10 -0.79 8.10 -51.93 -0.42 -1.21 16 39 H 0.19 -0.70 8.00 -52.49 -0.42 -1.12 16 LS Contribution 366.72 15.07 5.53 5.53 Total: 0.00 -13.54 366.72 -11.83 -25.38 By element: Atomic # 1 Polarization: -12.45 SS G_CDS: -4.02 Total: -16.47 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.50 Total: -0.87 kcal Atomic # 7 Polarization: 7.64 SS G_CDS: -0.48 Total: 7.16 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -2.26 Total: -9.92 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: -5.27 Total: -6.84 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.83 Total: -3.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -13.54 -11.83 -25.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17522900_15065232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.557 kcal (2) G-P(sol) polarization free energy of solvation -13.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds