Wall clock time and date at job start Mon Mar 8 2021 11:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 117.00131 * 2 1 4 4 O 1.20821 * 119.99627 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99808 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46975 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47270 * 180.02562 * 6 5 3 8 8 H 1.08992 * 112.84672 * 43.80539 * 7 6 5 9 9 C 1.53778 * 113.61178 * 175.00378 * 7 6 5 10 10 C 1.53787 * 87.08056 * 140.06502 * 9 7 6 11 11 H 1.08990 * 113.61226 * 219.93287 * 10 9 7 12 12 N 1.46497 * 113.60986 * 89.11257 * 10 9 7 13 13 S 1.65606 * 119.99616 * 144.71202 * 12 10 9 14 14 O 1.42094 * 106.40610 * 312.45933 * 13 12 10 15 15 O 1.42105 * 106.39842 * 179.53704 * 13 12 10 16 16 C 1.76207 * 107.21657 * 66.00008 * 13 12 10 17 17 C 1.33390 * 122.53917 * 66.95001 * 16 13 12 18 18 C 1.50696 * 125.20200 * 0.05354 * 17 16 13 19 19 O 1.42899 * 109.47395 * 320.74656 * 18 17 16 20 20 Si 1.86305 * 109.47241 * 200.74899 * 18 17 16 21 21 S 1.75885 * 109.59102 * 180.02562 * 17 16 13 22 22 C 1.75882 * 90.97045 * 359.82917 * 21 17 16 23 23 C 1.33390 * 109.59327 * 0.29972 * 22 21 17 24 24 C 1.53781 * 87.08048 * 334.56471 * 10 9 7 25 25 H 1.09000 * 109.47290 * 59.99159 * 1 2 3 26 26 H 1.09007 * 109.46895 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46838 * 299.99263 * 1 2 3 28 28 H 1.09005 * 109.47328 * 60.00959 * 5 3 2 29 29 H 1.08994 * 109.47581 * 300.00343 * 5 3 2 30 30 H 1.09005 * 109.46398 * 60.00281 * 6 5 3 31 31 H 1.08994 * 109.47157 * 300.00494 * 6 5 3 32 32 H 1.08995 * 113.61485 * 25.51826 * 9 7 6 33 33 H 1.09001 * 113.61523 * 254.61307 * 9 7 6 34 34 H 0.96997 * 120.00782 * 324.71086 * 12 10 9 35 35 H 1.08998 * 109.46915 * 80.75317 * 18 17 16 36 36 H 0.96699 * 114.00441 * 301.06488 * 19 18 17 37 37 H 1.48493 * 110.00173 * 180.02562 * 20 18 17 38 38 H 1.48504 * 109.99575 * 301.32322 * 20 18 17 39 39 H 1.07997 * 125.19990 * 180.18957 * 22 21 17 40 40 H 1.08000 * 122.53443 * 179.90376 * 23 22 21 41 41 H 1.09000 * 113.61334 * 139.97960 * 24 10 9 42 42 H 1.08996 * 113.61747 * 270.88502 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7421 0.0011 7 6 5.5281 2.8221 0.0011 8 1 5.9886 2.1206 -0.6945 9 6 6.0697 4.2562 -0.1212 10 6 7.1399 3.8557 0.9081 11 1 7.3536 4.6337 1.6409 12 7 8.3511 3.2926 0.3064 13 16 9.8310 3.5972 0.9845 14 8 9.8808 4.9963 1.2273 15 8 10.7866 2.9123 0.1863 16 6 9.8513 2.8169 2.5642 17 6 9.8243 1.4913 2.7101 18 6 9.7751 0.4940 1.5814 19 8 8.9093 0.9800 0.5537 20 14 9.1301 -1.1336 2.2185 21 16 9.8558 1.0855 4.4212 22 6 9.9105 2.7892 4.8548 23 6 9.8961 3.5332 3.7478 24 6 6.1485 2.7917 1.4079 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 3.9564 0.7806 -0.8893 29 1 3.9557 0.7808 0.8907 30 1 3.6101 3.2359 0.8912 31 1 3.6107 3.2364 -0.8888 32 1 5.3781 5.0165 0.2415 33 1 6.4759 4.4871 -1.1060 34 1 8.2864 2.7414 -0.4891 35 1 10.7773 0.3540 1.1763 36 1 8.0027 1.1432 0.8477 37 1 9.0773 -2.1260 1.1152 38 1 10.0040 -1.6341 3.3099 39 1 9.9481 3.1740 5.8632 40 1 9.9219 4.6126 3.7731 41 1 6.6181 1.8402 1.6575 42 1 5.4783 3.1516 2.1885 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17523014_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:47:28 Heat of formation + Delta-G solvation = -119.654959 kcal Electronic energy + Delta-G solvation = -29321.900408 eV Core-core repulsion = 25103.013506 eV Total energy + Delta-G solvation = -4218.886902 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.50603 -40.70632 -39.71014 -38.27141 -37.59853 -37.41139 -36.67913 -35.07463 -32.78003 -31.89189 -29.09943 -27.63882 -27.00074 -26.64582 -24.50350 -23.45137 -21.84585 -21.57392 -20.81224 -19.86216 -19.49389 -18.73256 -18.47151 -18.05574 -17.66141 -17.51095 -17.17587 -16.92821 -16.46528 -16.20430 -15.74902 -15.51744 -15.49466 -15.24453 -14.95309 -14.44719 -14.38512 -14.26979 -14.14215 -13.92934 -13.74304 -13.53765 -13.23867 -13.02585 -12.98933 -12.87620 -12.79785 -12.73881 -12.71794 -12.35248 -12.16549 -11.93534 -11.78490 -11.69027 -11.58708 -11.38444 -11.18461 -11.08168 -10.44872 -10.22008 -9.82604 -5.33923 -0.66003 -0.48554 0.27219 0.57226 0.94682 1.09456 1.22231 1.37517 1.72046 1.73059 2.08997 2.80811 3.00333 3.19367 3.34006 3.38198 3.54345 3.61000 3.65233 3.73958 3.96565 4.01887 4.10360 4.10881 4.15417 4.20569 4.23658 4.33058 4.38893 4.43042 4.55991 4.60354 4.63251 4.66836 4.73325 4.83948 4.86344 4.92019 5.08592 5.10946 5.13517 5.36981 5.43722 6.00063 6.15035 6.75221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.457 3.543 4 O -0.507 6.507 5 C -0.114 4.114 6 C -0.100 4.100 7 C -0.112 4.112 8 H 0.098 0.902 9 C -0.137 4.137 10 C 0.120 3.880 11 H 0.107 0.893 12 N -1.088 6.088 13 S 2.720 3.280 14 O -0.959 6.959 15 O -0.945 6.945 16 C -0.664 4.664 17 C -0.102 4.102 18 C -0.059 4.059 19 O -0.533 6.533 20 Si 0.667 3.333 21 S 0.154 5.846 22 C -0.211 4.211 23 C -0.075 4.075 24 C -0.154 4.154 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.425 0.575 35 H 0.148 0.852 36 H 0.379 0.621 37 H -0.226 1.226 38 H -0.233 1.233 39 H 0.175 0.825 40 H 0.159 0.841 41 H 0.070 0.930 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 -3.951 3.136 6.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.300 3.700 4 O -0.395 6.395 5 C -0.151 4.151 6 C -0.138 4.138 7 C -0.131 4.131 8 H 0.116 0.884 9 C -0.177 4.177 10 C 0.012 3.988 11 H 0.125 0.875 12 N -0.850 5.850 13 S 2.805 3.195 14 O -0.949 6.949 15 O -0.935 6.935 16 C -0.763 4.763 17 C -0.222 4.222 18 C -0.171 4.171 19 O -0.342 6.342 20 Si 0.565 3.435 21 S 0.418 5.582 22 C -0.347 4.347 23 C -0.103 4.103 24 C -0.193 4.193 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.264 0.736 35 H 0.165 0.835 36 H 0.231 0.769 37 H -0.148 1.148 38 H -0.157 1.157 39 H 0.193 0.807 40 H 0.176 0.824 41 H 0.088 0.912 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.420 -5.333 3.585 7.279 hybrid contribution -0.028 1.116 -0.421 1.193 sum -3.448 -4.217 3.164 6.300 Atomic orbital electron populations 1.23297 0.76010 1.03914 1.02677 1.86510 1.23736 1.33601 1.84035 1.23944 0.92477 0.81331 0.72254 1.90697 1.67377 1.36377 1.45035 1.21463 0.87163 1.00449 1.06075 1.21444 0.94490 0.93628 1.04201 1.22635 0.94654 0.98203 0.97576 0.88407 1.23335 0.97227 0.96905 1.00190 1.21693 0.84520 0.96039 0.96597 0.87501 1.55546 1.22025 1.66325 1.41125 1.01348 0.72361 0.73122 0.72676 1.93591 1.85873 1.29698 1.85781 1.93603 1.57895 1.75300 1.66674 1.29993 1.19833 1.02915 1.23580 1.25068 1.00643 0.96904 0.99629 1.25035 1.00016 1.03906 0.88172 1.86625 1.24485 1.87492 1.35585 0.94982 0.90164 0.75682 0.82681 1.84515 1.68740 1.07412 0.97563 1.25901 1.09949 0.95463 1.03392 1.19773 0.99686 1.01730 0.89115 1.23687 0.98720 0.99396 0.97494 0.91805 0.87945 0.91788 0.87497 0.87427 0.90535 0.90597 0.88458 0.90197 0.73625 0.83527 0.76934 1.14839 1.15728 0.80749 0.82394 0.91160 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.02 16 2 O -0.36 -0.10 10.57 -39.27 -0.41 -0.51 16 3 C 0.46 0.13 7.96 36.00 0.29 0.41 16 4 O -0.51 -1.79 15.73 -18.75 -0.29 -2.09 16 5 C -0.11 0.42 5.80 -27.88 -0.16 0.26 16 6 C -0.10 0.34 4.34 -26.73 -0.12 0.23 16 7 C -0.11 0.56 3.47 -89.80 -0.31 0.24 16 8 H 0.10 -0.58 8.09 -51.93 -0.42 -1.00 16 9 C -0.14 0.51 7.43 -25.92 -0.19 0.31 16 10 C 0.12 -0.41 4.52 -67.12 -0.30 -0.72 16 11 H 0.11 -0.33 7.74 -51.93 -0.40 -0.73 16 12 N -1.09 2.38 3.55 -4.20 -0.01 2.37 16 13 S 2.72 4.39 4.89 -107.50 -0.53 3.87 16 14 O -0.96 -4.31 16.82 -57.17 -0.96 -5.27 16 15 O -0.94 -4.58 16.52 -64.36 -1.06 -5.64 16 16 C -0.66 -0.23 5.79 -41.21 -0.24 -0.47 16 17 C -0.10 0.06 5.72 -36.00 -0.21 -0.14 16 18 C -0.06 0.07 2.23 36.00 0.08 0.15 16 19 O -0.53 1.20 8.17 -51.48 -0.42 0.78 16 20 Si 0.67 -1.77 31.20 -169.99 -5.30 -7.08 16 21 S 0.15 -0.21 20.87 -107.50 -2.24 -2.46 16 22 C -0.21 0.26 11.23 29.04 0.33 0.59 16 23 C -0.08 0.00 9.69 -41.21 -0.40 -0.39 16 24 C -0.15 0.83 7.18 -25.92 -0.19 0.65 16 25 H 0.06 -0.07 8.13 -51.93 -0.42 -0.49 16 26 H 0.10 -0.36 8.14 -51.92 -0.42 -0.78 16 27 H 0.06 -0.07 8.13 -51.93 -0.42 -0.50 16 28 H 0.11 -0.54 8.14 -51.93 -0.42 -0.96 16 29 H 0.11 -0.60 8.14 -51.93 -0.42 -1.02 16 30 H 0.08 -0.20 7.81 -51.93 -0.41 -0.60 16 31 H 0.08 -0.15 8.10 -51.93 -0.42 -0.57 16 32 H 0.10 -0.36 8.10 -51.93 -0.42 -0.78 16 33 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 34 H 0.43 -1.44 7.39 -34.47 -0.25 -1.69 16 35 H 0.15 -0.04 7.96 -51.93 -0.41 -0.46 16 36 H 0.38 -2.11 5.05 45.56 0.23 -1.88 16 37 H -0.23 0.06 7.11 56.52 0.40 0.46 16 38 H -0.23 0.17 7.11 56.52 0.40 0.57 16 39 H 0.18 -0.59 8.06 -52.49 -0.42 -1.01 16 40 H 0.16 -0.10 7.74 -52.49 -0.41 -0.50 16 41 H 0.07 -0.49 5.96 -51.93 -0.31 -0.79 16 42 H 0.10 -0.56 7.90 -51.93 -0.41 -0.97 16 LS Contribution 367.16 15.07 5.53 5.53 Total: 0.00 -10.88 367.16 -11.85 -22.73 By element: Atomic # 1 Polarization: -8.59 SS G_CDS: -5.79 Total: -14.38 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.36 Total: 2.14 kcal Atomic # 7 Polarization: 2.38 SS G_CDS: -0.01 Total: 2.37 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -3.15 Total: -12.73 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: -5.30 Total: -7.08 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -2.77 Total: 1.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -10.88 -11.85 -22.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17523014_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.921 kcal (2) G-P(sol) polarization free energy of solvation -10.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds