Wall clock time and date at job start Mon Mar 8 2021 10:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86300 * 109.47183 * 2 1 4 4 C 1.50698 * 109.47100 * 239.99860 * 2 1 3 5 5 C 1.33387 * 125.20562 * 317.66027 * 4 2 1 6 6 S 1.76199 * 122.53790 * 0.02562 * 5 4 2 7 7 O 1.42098 * 106.40539 * 314.58748 * 6 5 4 8 8 O 1.42102 * 106.40285 * 181.66314 * 6 5 4 9 9 N 1.65607 * 107.21721 * 68.12515 * 6 5 4 10 10 C 1.46496 * 119.99640 * 66.80591 * 9 6 5 11 11 H 1.09002 * 112.91193 * 12.84832 * 10 9 6 12 12 C 1.53789 * 113.61114 * 144.10327 * 10 9 6 13 13 C 1.53781 * 87.08158 * 89.11359 * 12 10 9 14 14 H 1.09000 * 113.61346 * 270.80048 * 13 12 10 15 15 C 1.52996 * 113.61103 * 139.97884 * 13 12 10 16 16 N 1.46503 * 109.46849 * 174.99828 * 15 13 12 17 17 C 1.35309 * 125.86805 * 124.71553 * 16 15 13 18 18 C 1.35356 * 106.17768 * 179.90297 * 17 16 15 19 19 N 1.33768 * 106.49177 * 0.35443 * 18 17 16 20 20 N 1.28635 * 108.89019 * 359.77445 * 19 18 17 21 21 C 1.53779 * 87.08041 * 25.43235 * 13 12 10 22 22 C 1.38421 * 114.92142 * 179.76006 * 5 4 2 23 23 C 1.33381 * 114.92266 * 0.23953 * 22 5 4 24 24 S 1.75882 * 109.59462 * 0.02562 * 23 22 5 25 25 H 0.96705 * 113.99677 * 53.09758 * 1 2 3 26 26 H 1.09005 * 109.46723 * 119.99965 * 2 1 3 27 27 H 1.48497 * 110.00186 * 298.68029 * 3 2 1 28 28 H 1.48504 * 109.99830 * 59.99915 * 3 2 1 29 29 H 0.96993 * 119.99603 * 246.80607 * 9 6 5 30 30 H 1.08999 * 113.61009 * 203.66065 * 12 10 9 31 31 H 1.09000 * 113.61066 * 334.47828 * 12 10 9 32 32 H 1.08996 * 109.47671 * 294.99997 * 15 13 12 33 33 H 1.09004 * 109.47252 * 55.00285 * 15 13 12 34 34 H 1.08007 * 126.91399 * 0.02562 * 17 16 15 35 35 H 1.08001 * 126.75236 * 180.12696 * 18 17 16 36 36 H 1.09004 * 113.61249 * 220.02045 * 21 13 12 37 37 H 1.09004 * 113.61550 * 89.11657 * 21 13 12 38 38 H 1.08002 * 122.53926 * 180.22944 * 22 5 4 39 39 H 1.08004 * 125.20497 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.4282 -1.8429 -1.7238 6 16 0.0689 -2.6800 -0.9780 7 8 0.3326 -2.7095 0.4179 8 8 -0.1547 -3.8509 -1.7517 9 7 -1.2674 -1.7231 -1.1813 10 6 -1.8071 -1.4944 -2.5239 11 1 -1.3912 -2.1721 -3.2695 12 6 -3.3417 -1.4018 -2.5633 13 6 -3.1786 0.1069 -2.3139 14 1 -3.1533 0.3746 -1.2576 15 6 -4.1489 0.9701 -3.1227 16 7 -3.9980 2.3733 -2.7297 17 6 -3.7305 3.4055 -3.5626 18 6 -3.6787 4.5130 -2.7861 19 7 -3.9063 4.1082 -1.5316 20 7 -4.0916 2.8353 -1.5319 21 6 -1.7855 -0.0179 -2.9532 22 6 2.0510 -2.3076 -2.8693 23 6 3.0632 -1.5553 -3.3033 24 16 3.2735 -0.1752 -2.2334 25 1 -0.3933 0.5305 -0.7065 26 1 1.7923 -0.5139 0.8900 27 1 1.5880 2.4586 -1.2242 28 1 1.5615 2.4679 1.2085 29 1 -1.6925 -1.3141 -0.4114 30 1 -3.7685 -1.6397 -3.5377 31 1 -3.8321 -1.9304 -1.7459 32 1 -3.9300 0.8648 -4.1852 33 1 -5.1715 0.6464 -2.9286 34 1 -3.5889 3.3561 -4.6322 35 1 -3.4873 5.5240 -3.1143 36 1 -1.0196 0.5720 -2.4496 37 1 -1.7870 0.1226 -4.0341 38 1 1.7410 -3.2111 -3.3733 39 1 3.6622 -1.7618 -4.1780 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567534_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:24:53 Heat of formation + Delta-G solvation = 78.067626 kcal Electronic energy + Delta-G solvation = -28669.653355 eV Core-core repulsion = 24643.974718 eV Total energy + Delta-G solvation = -4025.678637 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -44.21817 -40.91711 -39.74439 -38.30901 -37.55099 -36.72772 -35.94295 -33.68596 -32.00690 -31.92906 -29.52051 -27.63815 -27.05440 -25.01547 -24.42422 -23.65071 -22.48708 -21.85712 -20.91347 -19.99066 -19.49522 -18.87064 -18.56692 -18.15118 -17.53198 -17.24980 -17.07053 -16.63025 -16.24155 -16.01046 -15.77737 -15.58370 -15.42246 -15.17722 -14.98664 -14.57289 -14.30496 -14.14704 -14.01693 -13.90596 -13.43732 -13.23407 -13.04443 -12.92016 -12.80712 -12.69795 -12.56632 -12.34936 -12.32900 -11.98575 -11.89815 -11.76663 -11.64766 -11.27857 -10.99381 -10.59129 -10.37294 -10.20931 -9.84559 -5.31316 -0.68331 -0.50271 0.27371 0.55314 0.60113 0.92949 1.07303 1.28096 1.36670 1.63261 1.71203 2.02177 2.72988 2.95310 2.99472 3.11299 3.17766 3.23269 3.37931 3.49843 3.52658 3.65415 3.81608 3.94868 4.02338 4.08223 4.09372 4.17436 4.24881 4.33814 4.35323 4.37112 4.55705 4.59171 4.66066 4.73480 4.79962 4.84647 5.06892 5.13127 5.18751 5.54232 5.89880 5.99986 7.54130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.518 6.518 2 C -0.068 4.068 3 Si 0.672 3.328 4 C -0.097 4.097 5 C -0.668 4.668 6 S 2.719 3.281 7 O -0.943 6.943 8 O -0.959 6.959 9 N -1.087 6.087 10 C 0.128 3.872 11 H 0.112 0.888 12 C -0.131 4.131 13 C -0.129 4.129 14 H 0.112 0.888 15 C 0.122 3.878 16 N -0.288 5.288 17 C -0.052 4.052 18 C -0.052 4.052 19 N -0.272 5.272 20 N -0.084 5.084 21 C -0.153 4.153 22 C -0.076 4.076 23 C -0.211 4.211 24 S 0.157 5.843 25 H 0.374 0.626 26 H 0.153 0.847 27 H -0.241 1.241 28 H -0.226 1.226 29 H 0.425 0.575 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.190 0.810 35 H 0.189 0.811 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.158 0.842 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.860 1.871 -7.519 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.326 6.326 2 C -0.179 4.179 3 Si 0.568 3.432 4 C -0.218 4.218 5 C -0.767 4.767 6 S 2.805 3.195 7 O -0.933 6.933 8 O -0.949 6.949 9 N -0.848 5.848 10 C 0.019 3.981 11 H 0.130 0.870 12 C -0.171 4.171 13 C -0.148 4.148 14 H 0.130 0.870 15 C 0.002 3.998 16 N -0.082 5.082 17 C -0.203 4.203 18 C -0.209 4.209 19 N -0.138 5.138 20 N -0.064 5.064 21 C -0.192 4.192 22 C -0.105 4.105 23 C -0.347 4.347 24 S 0.421 5.579 25 H 0.225 0.775 26 H 0.171 0.829 27 H -0.165 1.165 28 H -0.149 1.149 29 H 0.263 0.737 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.207 0.793 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.175 0.825 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.632 2.321 -5.271 6.332 hybrid contribution -1.458 -0.310 -2.054 2.538 sum 1.174 2.012 -7.326 7.687 Atomic orbital electron populations 1.86697 1.16824 1.72277 1.56804 1.24935 0.84341 1.11800 0.96808 0.94991 0.91171 0.73587 0.83420 1.25019 0.99465 0.97298 0.99985 1.29943 1.25383 1.10037 1.11346 1.01354 0.72338 0.72561 0.73288 1.93606 1.84265 1.85897 1.29531 1.93590 1.84803 1.43792 1.72746 1.55493 1.45710 1.70008 1.13618 1.21567 0.95824 0.96670 0.84042 0.87031 1.23316 0.95774 0.93842 1.04172 1.23020 0.94840 0.95465 1.01440 0.86953 1.22264 1.02508 0.74442 1.00629 1.47540 1.45027 1.09591 1.06070 1.23724 1.09226 0.87648 0.99704 1.23685 1.06915 1.00633 0.89694 1.75173 1.15648 1.02172 1.20809 1.78313 1.19506 1.05718 1.02848 1.23676 0.96681 0.97213 1.01672 1.19757 0.95426 1.01072 0.94203 1.25916 1.04102 0.99518 1.05126 1.84268 1.29915 1.25358 1.18393 0.77520 0.82929 1.16501 1.14892 0.73685 0.88017 0.89357 0.87283 0.87782 0.79331 0.79383 0.91366 0.88315 0.82453 0.80720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.24 8.19 -49.33 -0.40 -0.16 16 2 C -0.07 0.04 2.13 36.00 0.08 0.11 16 3 Si 0.67 -0.98 31.02 -169.99 -5.27 -6.25 16 4 C -0.10 0.02 5.77 -36.00 -0.21 -0.18 16 5 C -0.67 -0.40 5.80 -41.21 -0.24 -0.64 16 6 S 2.72 5.08 4.90 -107.50 -0.53 4.55 16 7 O -0.94 -4.73 16.47 -63.72 -1.05 -5.78 16 8 O -0.96 -4.17 16.80 -57.17 -0.96 -5.13 16 9 N -1.09 1.64 3.86 -4.20 -0.02 1.62 16 10 C 0.13 -0.44 4.52 -67.12 -0.30 -0.74 16 11 H 0.11 -0.40 7.72 -51.93 -0.40 -0.80 16 12 C -0.13 0.62 7.43 -25.91 -0.19 0.43 16 13 C -0.13 0.54 3.65 -89.81 -0.33 0.21 16 14 H 0.11 -0.28 7.86 -51.93 -0.41 -0.69 16 15 C 0.12 -0.54 6.29 -4.04 -0.03 -0.56 16 16 N -0.29 0.20 3.44 -61.26 -0.21 -0.01 16 17 C -0.05 0.08 11.57 -17.05 -0.20 -0.11 16 18 C -0.05 -0.04 12.05 -17.74 -0.21 -0.25 16 19 N -0.27 -1.20 12.41 30.24 0.38 -0.82 16 20 N -0.08 -0.27 12.76 60.35 0.77 0.50 16 21 C -0.15 0.69 7.36 -25.92 -0.19 0.50 16 22 C -0.08 0.01 9.69 -41.21 -0.40 -0.39 16 23 C -0.21 0.29 11.23 29.03 0.33 0.62 16 24 S 0.16 -0.25 20.79 -107.50 -2.24 -2.48 16 25 H 0.37 -0.97 6.11 45.56 0.28 -0.70 16 26 H 0.15 -0.08 7.90 -51.93 -0.41 -0.49 16 27 H -0.24 -0.01 7.11 56.52 0.40 0.40 16 28 H -0.23 -0.29 7.11 56.52 0.40 0.11 16 29 H 0.42 -0.89 7.51 -34.47 -0.26 -1.15 16 30 H 0.10 -0.65 8.10 -51.93 -0.42 -1.07 16 31 H 0.09 -0.35 8.14 -51.93 -0.42 -0.78 16 32 H 0.11 -0.78 7.77 -51.93 -0.40 -1.18 16 33 H 0.10 -0.50 8.14 -51.93 -0.42 -0.93 16 34 H 0.19 -1.05 8.06 -52.48 -0.42 -1.47 16 35 H 0.19 -0.39 8.06 -52.49 -0.42 -0.81 16 36 H 0.07 -0.26 6.12 -51.93 -0.32 -0.58 16 37 H 0.10 -0.59 7.90 -51.93 -0.41 -1.00 16 38 H 0.16 -0.13 7.74 -52.49 -0.41 -0.53 16 39 H 0.18 -0.64 8.06 -52.48 -0.42 -1.06 16 LS Contribution 347.54 15.07 5.24 5.24 Total: 0.00 -11.82 347.54 -10.66 -22.48 By element: Atomic # 1 Polarization: -8.26 SS G_CDS: -4.47 Total: -12.73 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.89 Total: -1.02 kcal Atomic # 7 Polarization: 0.38 SS G_CDS: 0.92 Total: 1.29 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -2.41 Total: -11.08 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: -5.27 Total: -6.25 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -2.76 Total: 2.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -11.82 -10.66 -22.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567534_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.545 kcal (2) G-P(sol) polarization free energy of solvation -11.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds