Wall clock time and date at job start Mon Mar 8 2021 10:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86300 * 109.47183 * 2 1 4 4 C 1.50698 * 109.47100 * 239.99860 * 2 1 3 5 5 C 1.33387 * 125.20562 * 317.66027 * 4 2 1 6 6 S 1.76199 * 122.53790 * 0.02562 * 5 4 2 7 7 O 1.42098 * 106.40539 * 314.58748 * 6 5 4 8 8 O 1.42102 * 106.40285 * 181.66314 * 6 5 4 9 9 N 1.65607 * 107.21721 * 68.12515 * 6 5 4 10 10 C 1.46496 * 119.99640 * 66.80591 * 9 6 5 11 11 H 1.09002 * 112.91193 * 12.84832 * 10 9 6 12 12 C 1.53789 * 113.61114 * 144.10327 * 10 9 6 13 13 C 1.53781 * 87.08158 * 89.11359 * 12 10 9 14 14 H 1.09000 * 113.61346 * 270.80048 * 13 12 10 15 15 C 1.52996 * 113.61103 * 139.97884 * 13 12 10 16 16 N 1.46503 * 109.46849 * 174.99828 * 15 13 12 17 17 C 1.35309 * 125.86805 * 124.71553 * 16 15 13 18 18 C 1.35356 * 106.17768 * 179.90297 * 17 16 15 19 19 N 1.33768 * 106.49177 * 0.35443 * 18 17 16 20 20 N 1.28635 * 108.89019 * 359.77445 * 19 18 17 21 21 C 1.53779 * 87.08041 * 25.43235 * 13 12 10 22 22 C 1.38421 * 114.92142 * 179.76006 * 5 4 2 23 23 C 1.33381 * 114.92266 * 0.23953 * 22 5 4 24 24 S 1.75882 * 109.59462 * 0.02562 * 23 22 5 25 25 H 0.96705 * 113.99677 * 53.09758 * 1 2 3 26 26 H 1.09005 * 109.46723 * 119.99965 * 2 1 3 27 27 H 1.48497 * 110.00186 * 298.68029 * 3 2 1 28 28 H 1.48504 * 109.99830 * 59.99915 * 3 2 1 29 29 H 0.96993 * 119.99603 * 246.80607 * 9 6 5 30 30 H 1.08999 * 113.61009 * 203.66065 * 12 10 9 31 31 H 1.09000 * 113.61066 * 334.47828 * 12 10 9 32 32 H 1.08996 * 109.47671 * 294.99997 * 15 13 12 33 33 H 1.09004 * 109.47252 * 55.00285 * 15 13 12 34 34 H 1.08007 * 126.91399 * 0.02562 * 17 16 15 35 35 H 1.08001 * 126.75236 * 180.12696 * 18 17 16 36 36 H 1.09004 * 113.61249 * 220.02045 * 21 13 12 37 37 H 1.09004 * 113.61550 * 89.11657 * 21 13 12 38 38 H 1.08002 * 122.53926 * 180.22944 * 22 5 4 39 39 H 1.08004 * 125.20497 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.4282 -1.8429 -1.7238 6 16 0.0689 -2.6800 -0.9780 7 8 0.3326 -2.7095 0.4179 8 8 -0.1547 -3.8509 -1.7517 9 7 -1.2674 -1.7231 -1.1813 10 6 -1.8071 -1.4944 -2.5239 11 1 -1.3912 -2.1721 -3.2695 12 6 -3.3417 -1.4018 -2.5633 13 6 -3.1786 0.1069 -2.3139 14 1 -3.1533 0.3746 -1.2576 15 6 -4.1489 0.9701 -3.1227 16 7 -3.9980 2.3733 -2.7297 17 6 -3.7305 3.4055 -3.5626 18 6 -3.6787 4.5130 -2.7861 19 7 -3.9063 4.1082 -1.5316 20 7 -4.0916 2.8353 -1.5319 21 6 -1.7855 -0.0179 -2.9532 22 6 2.0510 -2.3076 -2.8693 23 6 3.0632 -1.5553 -3.3033 24 16 3.2735 -0.1752 -2.2334 25 1 -0.3933 0.5305 -0.7065 26 1 1.7923 -0.5139 0.8900 27 1 1.5880 2.4586 -1.2242 28 1 1.5615 2.4679 1.2085 29 1 -1.6925 -1.3141 -0.4114 30 1 -3.7685 -1.6397 -3.5377 31 1 -3.8321 -1.9304 -1.7459 32 1 -3.9300 0.8648 -4.1852 33 1 -5.1715 0.6464 -2.9286 34 1 -3.5889 3.3561 -4.6322 35 1 -3.4873 5.5240 -3.1143 36 1 -1.0196 0.5720 -2.4496 37 1 -1.7870 0.1226 -4.0341 38 1 1.7410 -3.2111 -3.3733 39 1 3.6622 -1.7618 -4.1780 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567534_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:24:53 Heat of formation + Delta-G solvation = 73.821415 kcal Electronic energy + Delta-G solvation = -28669.837484 eV Core-core repulsion = 24643.974718 eV Total energy + Delta-G solvation = -4025.862766 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.16952 -40.64015 -39.69443 -38.45777 -37.58588 -36.97570 -35.81667 -33.58716 -31.95205 -31.86910 -29.31057 -27.58166 -26.70671 -24.84922 -24.36760 -23.57541 -22.36921 -21.84393 -20.71662 -19.92016 -19.45899 -18.83491 -18.45959 -18.14514 -17.41766 -17.21596 -16.96723 -16.55967 -16.21543 -15.89101 -15.68269 -15.43262 -15.33769 -15.13064 -14.82183 -14.35426 -14.25739 -14.14705 -13.90117 -13.61871 -13.30300 -13.24648 -13.17977 -13.12129 -12.84786 -12.65872 -12.50746 -12.38211 -12.15044 -11.86720 -11.73387 -11.60801 -11.52201 -11.22747 -10.85451 -10.42914 -10.32495 -10.13802 -9.74675 -5.24292 -0.72151 -0.50476 0.35072 0.62315 0.69437 0.99650 1.11372 1.41083 1.52092 1.61907 1.75076 2.03889 2.67250 3.01535 3.21883 3.33899 3.41994 3.45012 3.54751 3.68273 3.75550 4.01300 4.04222 4.19299 4.21109 4.27263 4.33877 4.34932 4.39724 4.41789 4.69705 4.73347 4.77834 4.78193 4.89385 4.93657 5.05716 5.09032 5.13923 5.26615 5.45929 5.72422 6.03011 6.12077 7.54293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.081 4.081 3 Si 0.745 3.255 4 C -0.108 4.108 5 C -0.672 4.672 6 S 2.727 3.273 7 O -0.984 6.984 8 O -0.990 6.990 9 N -1.080 6.080 10 C 0.114 3.886 11 H 0.115 0.885 12 C -0.123 4.123 13 C -0.126 4.126 14 H 0.088 0.912 15 C 0.115 3.885 16 N -0.281 5.281 17 C -0.034 4.034 18 C -0.075 4.075 19 N -0.324 5.324 20 N -0.125 5.125 21 C -0.145 4.145 22 C -0.094 4.094 23 C -0.206 4.206 24 S 0.192 5.808 25 H 0.382 0.618 26 H 0.148 0.852 27 H -0.254 1.254 28 H -0.270 1.270 29 H 0.427 0.573 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.235 0.765 35 H 0.207 0.793 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.160 0.840 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 2.227 -10.452 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.191 4.191 3 Si 0.643 3.357 4 C -0.229 4.229 5 C -0.775 4.775 6 S 2.816 3.184 7 O -0.974 6.974 8 O -0.980 6.980 9 N -0.843 5.843 10 C 0.006 3.994 11 H 0.133 0.867 12 C -0.163 4.163 13 C -0.146 4.146 14 H 0.106 0.894 15 C -0.005 4.005 16 N -0.075 5.075 17 C -0.185 4.185 18 C -0.233 4.233 19 N -0.189 5.189 20 N -0.105 5.105 21 C -0.184 4.184 22 C -0.122 4.122 23 C -0.342 4.342 24 S 0.457 5.543 25 H 0.234 0.766 26 H 0.165 0.835 27 H -0.179 1.179 28 H -0.195 1.195 29 H 0.266 0.734 30 H 0.146 0.854 31 H 0.096 0.904 32 H 0.166 0.834 33 H 0.127 0.873 34 H 0.251 0.749 35 H 0.223 0.777 36 H 0.078 0.922 37 H 0.142 0.858 38 H 0.177 0.823 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.125 2.631 -8.186 9.148 hybrid contribution -1.622 -0.393 -1.207 2.059 sum 1.503 2.238 -9.393 9.772 Atomic orbital electron populations 1.86683 1.17127 1.72631 1.57341 1.25151 0.84336 1.12733 0.96845 0.94198 0.90017 0.71208 0.80228 1.25101 1.00270 0.97290 1.00244 1.29680 1.25308 1.10458 1.12025 1.00658 0.72935 0.72605 0.72189 1.93546 1.85159 1.86736 1.31961 1.93543 1.85508 1.45978 1.73004 1.55222 1.44749 1.69502 1.14826 1.21832 0.96839 0.97819 0.82884 0.86671 1.23348 0.94568 0.93130 1.05222 1.22890 0.95423 0.95898 1.00352 0.89360 1.22655 1.02723 0.72480 1.02597 1.47848 1.43412 1.10972 1.05282 1.24385 1.06584 0.86367 1.01201 1.24198 1.07477 1.02486 0.89112 1.75096 1.17482 1.03137 1.23216 1.78234 1.21676 1.05606 1.04937 1.23706 0.95981 0.95738 1.02995 1.19845 0.96287 1.01744 0.94355 1.26264 1.03446 0.98930 1.05515 1.84143 1.28262 1.24656 1.17287 0.76637 0.83460 1.17882 1.19470 0.73445 0.85390 0.90352 0.83375 0.87308 0.74911 0.77657 0.92231 0.85780 0.82258 0.78292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.45 8.19 -135.50 -1.11 -1.56 16 2 C -0.08 -0.01 2.13 71.24 0.15 0.14 16 3 Si 0.74 -1.68 31.02 68.60 2.13 0.45 16 4 C -0.11 0.02 5.77 24.59 0.14 0.16 16 5 C -0.67 -1.26 5.80 21.22 0.12 -1.14 16 6 S 2.73 15.07 4.90 -56.49 -0.28 14.80 16 7 O -0.98 -12.42 16.47 -121.74 -2.01 -14.42 16 8 O -0.99 -10.32 16.80 -128.00 -2.15 -12.47 16 9 N -1.08 1.75 3.86 -167.19 -0.65 1.10 16 10 C 0.11 -0.80 4.52 45.52 0.21 -0.59 16 11 H 0.12 -0.87 7.72 -2.39 -0.02 -0.89 16 12 C -0.12 1.25 7.43 31.12 0.23 1.48 16 13 C -0.13 1.11 3.65 -10.27 -0.04 1.08 16 14 H 0.09 -0.31 7.86 -2.39 -0.02 -0.33 16 15 C 0.11 -1.21 6.29 86.38 0.54 -0.66 16 16 N -0.28 0.60 3.44 -347.73 -1.20 -0.59 16 17 C -0.03 0.17 11.57 83.49 0.97 1.14 16 18 C -0.07 -0.11 12.05 83.73 1.01 0.90 16 19 N -0.32 -3.36 12.41 -58.25 -0.72 -4.08 16 20 N -0.13 -0.96 12.76 37.02 0.47 -0.49 16 21 C -0.15 1.48 7.36 31.12 0.23 1.70 16 22 C -0.09 0.04 9.69 21.21 0.21 0.24 16 23 C -0.21 0.86 11.23 66.72 0.75 1.61 16 24 S 0.19 -0.83 20.79 -56.49 -1.17 -2.01 16 25 H 0.38 -1.40 6.11 -74.05 -0.45 -1.85 16 26 H 0.15 0.12 7.90 -2.38 -0.02 0.10 16 27 H -0.25 0.04 7.11 99.48 0.71 0.75 16 28 H -0.27 -1.26 7.11 99.48 0.71 -0.56 16 29 H 0.43 -0.89 7.51 -96.75 -0.73 -1.62 16 30 H 0.13 -1.95 8.10 -2.39 -0.02 -1.97 16 31 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.15 -2.72 7.77 -2.39 -0.02 -2.74 16 33 H 0.11 -1.20 8.14 -2.39 -0.02 -1.22 16 34 H 0.23 -3.56 8.06 -2.91 -0.02 -3.58 16 35 H 0.21 -0.88 8.06 -2.91 -0.02 -0.90 16 36 H 0.06 -0.47 6.12 -2.38 -0.01 -0.48 16 37 H 0.12 -1.86 7.90 -2.38 -0.02 -1.88 16 38 H 0.16 -0.22 7.74 -2.91 -0.02 -0.24 16 39 H 0.20 -1.92 8.06 -2.91 -0.02 -1.95 16 Total: 0.00 -31.00 347.54 -2.18 -33.19 By element: Atomic # 1 Polarization: -19.95 SS G_CDS: -0.02 Total: -19.97 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 4.52 Total: 6.06 kcal Atomic # 7 Polarization: -1.97 SS G_CDS: -2.09 Total: -4.06 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -5.26 Total: -28.45 kcal Atomic # 14 Polarization: -1.68 SS G_CDS: 2.13 Total: 0.45 kcal Atomic # 16 Polarization: 14.24 SS G_CDS: -1.45 Total: 12.79 kcal Total: -31.00 -2.18 -33.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567534_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.008 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds