Wall clock time and date at job start Mon Mar 8 2021 10:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86306 * 109.46823 * 2 1 4 4 C 1.50693 * 109.46872 * 119.99922 * 2 1 3 5 5 C 1.33388 * 122.54245 * 75.00419 * 4 2 1 6 6 S 1.76204 * 125.19832 * 359.95392 * 5 4 2 7 7 O 1.42105 * 106.40059 * 293.53791 * 6 5 4 8 8 O 1.42091 * 106.40230 * 66.46113 * 6 5 4 9 9 N 1.65599 * 107.21566 * 180.02562 * 6 5 4 10 10 C 1.46501 * 120.00291 * 64.99583 * 9 6 5 11 11 C 1.53003 * 109.47265 * 164.99870 * 10 9 6 12 12 H 1.09004 * 112.84968 * 45.33610 * 11 10 9 13 13 C 1.53773 * 113.61678 * 176.53222 * 11 10 9 14 14 C 1.53777 * 87.08314 * 139.98146 * 13 11 10 15 15 H 1.09008 * 113.61320 * 89.20590 * 14 13 11 16 16 N 1.46500 * 113.61511 * 220.01552 * 14 13 11 17 17 C 1.35318 * 125.86426 * 85.00574 * 16 14 13 18 18 C 1.35354 * 106.17463 * 179.97438 * 17 16 14 19 19 N 1.33775 * 106.49378 * 359.97438 * 18 17 16 20 20 N 1.28633 * 108.88826 * 359.73629 * 19 18 17 21 21 C 1.53785 * 113.61654 * 274.14363 * 11 10 9 22 22 S 1.75879 * 109.59837 * 179.97438 * 5 4 2 23 23 C 1.75889 * 90.97049 * 359.97438 * 22 5 4 24 24 C 1.33389 * 109.59326 * 0.02562 * 23 22 5 25 25 H 0.96702 * 113.99871 * 300.00420 * 1 2 3 26 26 H 1.08996 * 109.46644 * 240.00285 * 2 1 3 27 27 H 1.48498 * 109.99580 * 178.68072 * 3 2 1 28 28 H 1.48493 * 110.00014 * 300.00059 * 3 2 1 29 29 H 0.97004 * 119.99633 * 244.99912 * 9 6 5 30 30 H 1.08990 * 109.47343 * 285.00124 * 10 9 6 31 31 H 1.09008 * 109.46817 * 45.00468 * 10 9 6 32 32 H 1.09003 * 113.61481 * 254.53225 * 13 11 10 33 33 H 1.09000 * 113.61371 * 25.34916 * 13 11 10 34 34 H 1.07995 * 126.90997 * 359.97438 * 17 16 14 35 35 H 1.07993 * 126.75040 * 180.02562 * 18 17 16 36 36 H 1.09003 * 113.60907 * 334.56076 * 21 11 10 37 37 H 1.08997 * 113.61629 * 105.46890 * 21 11 10 38 38 H 1.07995 * 125.20405 * 179.73500 * 23 22 5 39 39 H 1.07998 * 122.54399 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8962 -2.0377 1.3572 6 16 1.2748 -3.1575 0.1469 7 8 -0.1223 -2.9146 0.0553 8 8 2.1532 -3.0725 -0.9668 9 7 1.4438 -4.6861 0.7609 10 6 0.6866 -5.0860 1.9497 11 6 0.7236 -6.6091 2.0896 12 1 1.7202 -7.0240 1.9383 13 6 0.0262 -7.1284 3.3579 14 6 -0.5257 -8.2724 2.4911 15 1 0.1281 -9.1437 2.4502 16 7 -1.9168 -8.6189 2.7930 17 6 -3.0135 -8.0124 2.2827 18 6 -4.0805 -8.6443 2.8250 19 7 -3.5908 -9.5943 3.6296 20 7 -2.3058 -9.5569 3.5839 21 6 -0.3717 -7.3285 1.2847 22 16 2.5643 -2.4993 2.9174 23 6 2.8634 -0.8138 3.3215 24 6 2.4651 -0.0349 2.3145 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5615 2.4679 -1.2084 29 1 2.0442 -5.3169 0.3335 30 1 1.1305 -4.6290 2.8339 31 1 -0.3474 -4.7553 1.8500 32 1 0.7183 -7.4614 4.1314 33 1 -0.7434 -6.4571 3.7389 34 1 -3.0333 -7.1897 1.5833 35 1 -5.1223 -8.4253 2.6433 36 1 -1.2513 -6.7127 1.0971 37 1 -0.0004 -7.8228 0.3870 38 1 3.2982 -0.4628 4.2456 39 1 2.5524 1.0412 2.3427 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17567540_13652106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:07 Heat of formation + Delta-G solvation = 73.621256 kcal Electronic energy + Delta-G solvation = -27285.268343 eV Core-core repulsion = 23259.396897 eV Total energy + Delta-G solvation = -4025.871446 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.19865 -40.76293 -40.16276 -38.23356 -37.17664 -36.88545 -36.43756 -33.98403 -31.94546 -31.59454 -28.96668 -28.12211 -27.30904 -25.29702 -24.46963 -23.58243 -22.49616 -21.76251 -20.95566 -19.98849 -19.77581 -19.08507 -18.54254 -17.95364 -17.47239 -17.38577 -16.81917 -16.71308 -16.35675 -16.00094 -15.97027 -15.77040 -15.68063 -15.26797 -15.03792 -14.33714 -14.07825 -13.98359 -13.95139 -13.87967 -13.75600 -13.30470 -13.16421 -13.06676 -12.78371 -12.71042 -12.66473 -12.60965 -12.29097 -12.24349 -11.97672 -11.84944 -11.68184 -11.00389 -10.90416 -10.64156 -10.55752 -10.29383 -9.80620 -5.19009 -0.80391 -0.79596 0.07549 0.44097 0.65564 1.06210 1.11800 1.32492 1.54507 1.71597 1.77129 1.87345 2.50603 2.73837 2.88182 3.11869 3.19438 3.26590 3.32831 3.53540 3.58453 3.62701 3.80734 3.85290 3.92930 4.00924 4.05535 4.16138 4.18967 4.23885 4.27070 4.35707 4.39244 4.49608 4.50705 4.57645 4.69526 4.76125 4.88530 4.89745 5.26254 5.61657 5.64470 6.42843 7.62317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.518 6.518 2 C -0.099 4.099 3 Si 0.707 3.293 4 C 0.006 3.994 5 C -0.769 4.769 6 S 2.715 3.285 7 O -0.923 6.923 8 O -0.949 6.949 9 N -1.119 6.119 10 C 0.124 3.876 11 C -0.111 4.111 12 H 0.114 0.886 13 C -0.134 4.134 14 C 0.115 3.885 15 H 0.137 0.863 16 N -0.282 5.282 17 C -0.051 4.051 18 C -0.050 4.050 19 N -0.272 5.272 20 N -0.086 5.086 21 C -0.141 4.141 22 S 0.202 5.798 23 C -0.162 4.162 24 C -0.157 4.157 25 H 0.382 0.618 26 H 0.123 0.877 27 H -0.251 1.251 28 H -0.245 1.245 29 H 0.423 0.577 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.190 0.810 35 H 0.191 0.809 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.180 0.820 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 4.304 3.731 6.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.323 6.323 2 C -0.211 4.211 3 Si 0.606 3.394 4 C -0.011 4.011 5 C -0.969 4.969 6 S 2.799 3.201 7 O -0.913 6.913 8 O -0.939 6.939 9 N -0.881 5.881 10 C -0.003 4.003 11 C -0.131 4.131 12 H 0.132 0.868 13 C -0.174 4.174 14 C 0.013 3.987 15 H 0.155 0.845 16 N -0.076 5.076 17 C -0.202 4.202 18 C -0.207 4.207 19 N -0.138 5.138 20 N -0.065 5.065 21 C -0.179 4.179 22 S 0.468 5.532 23 C -0.299 4.299 24 C -0.187 4.187 25 H 0.229 0.771 26 H 0.140 0.860 27 H -0.175 1.175 28 H -0.169 1.169 29 H 0.259 0.741 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.207 0.793 35 H 0.208 0.792 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.198 0.802 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.420 2.416 3.811 6.317 hybrid contribution 0.314 1.540 -1.041 1.885 sum 4.734 3.956 2.770 6.763 Atomic orbital electron populations 1.86693 1.14967 1.81698 1.48985 1.25401 0.86890 1.12565 0.96267 0.94813 0.81017 0.75915 0.87644 1.19076 0.93959 0.91384 0.96724 1.35733 1.26109 1.14484 1.20529 1.01606 0.74352 0.71718 0.72382 1.93660 1.29274 1.83840 1.84508 1.93634 1.67530 1.85708 1.47071 1.55602 1.58696 1.31133 1.42677 1.21435 0.97077 0.95147 0.86599 1.22577 0.99875 0.94064 0.96612 0.86798 1.23461 1.00677 0.96108 0.97135 1.23411 0.77769 0.98972 0.98505 0.84491 1.47504 1.08196 1.22376 1.29486 1.23633 0.86089 1.04526 1.05924 1.23687 1.00948 0.96668 0.99387 1.75160 1.00207 1.19592 1.18794 1.78340 1.07833 1.08533 1.11836 1.23652 1.00159 0.97094 0.96999 1.84035 1.56330 1.06320 1.06519 1.26182 1.03395 0.96743 1.03558 1.20227 1.03572 1.01651 0.93255 0.77051 0.85985 1.17501 1.16919 0.74118 0.91040 0.89169 0.88764 0.88305 0.79299 0.79226 0.87871 0.88772 0.80237 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.57 12.30 -36.15 -0.44 -1.01 16 2 C -0.10 -0.08 2.33 36.00 0.08 0.01 16 3 Si 0.71 -1.03 30.25 -169.99 -5.14 -6.17 16 4 C 0.01 0.00 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -0.27 6.46 29.04 0.19 -0.08 16 6 S 2.72 3.83 5.07 -107.50 -0.55 3.28 16 7 O -0.92 -3.66 16.90 -59.59 -1.01 -4.66 16 8 O -0.95 -4.33 17.50 -57.17 -1.00 -5.34 16 9 N -1.12 3.22 5.81 -10.61 -0.06 3.16 16 10 C 0.12 -0.53 5.79 -4.04 -0.02 -0.56 16 11 C -0.11 0.63 3.78 -89.81 -0.34 0.29 16 12 H 0.11 -0.81 8.14 -51.93 -0.42 -1.23 16 13 C -0.13 0.63 7.44 -25.93 -0.19 0.44 16 14 C 0.12 -0.37 4.96 -67.03 -0.33 -0.71 16 15 H 0.14 -0.55 8.14 -51.92 -0.42 -0.98 16 16 N -0.28 -0.13 3.53 -53.88 -0.19 -0.32 16 17 C -0.05 0.03 10.78 -17.04 -0.18 -0.16 16 18 C -0.05 -0.08 12.06 -17.73 -0.21 -0.29 16 19 N -0.27 -1.41 12.41 30.23 0.38 -1.03 16 20 N -0.09 -0.37 13.17 60.35 0.79 0.42 16 21 C -0.14 0.69 6.99 -25.83 -0.18 0.51 16 22 S 0.20 -0.49 21.09 -107.50 -2.27 -2.76 16 23 C -0.16 0.49 11.23 29.04 0.33 0.82 16 24 C -0.16 0.35 8.74 -41.20 -0.36 -0.01 16 25 H 0.38 -1.36 8.70 45.56 0.40 -0.97 16 26 H 0.12 0.28 7.24 -51.93 -0.38 -0.09 16 27 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 28 H -0.24 -0.39 7.11 56.52 0.40 0.01 16 29 H 0.42 -2.05 8.65 -34.47 -0.30 -2.35 16 30 H 0.07 -0.38 6.25 -51.93 -0.32 -0.70 16 31 H 0.09 -0.35 7.48 -51.92 -0.39 -0.74 16 32 H 0.09 -0.49 8.14 -51.93 -0.42 -0.91 16 33 H 0.10 -0.41 8.10 -51.93 -0.42 -0.83 16 34 H 0.19 -0.76 6.74 -52.49 -0.35 -1.11 16 35 H 0.19 -0.27 8.06 -52.49 -0.42 -0.70 16 36 H 0.10 -0.51 6.11 -51.93 -0.32 -0.82 16 37 H 0.09 -0.51 8.14 -51.93 -0.42 -0.94 16 38 H 0.18 -1.05 8.06 -52.49 -0.42 -1.47 16 39 H 0.16 -0.79 5.73 -52.49 -0.30 -1.09 16 LS Contribution 351.61 15.07 5.30 5.30 Total: 0.00 -14.03 351.61 -10.08 -24.11 By element: Atomic # 1 Polarization: -10.58 SS G_CDS: -4.12 Total: -14.70 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.77 Total: -0.28 kcal Atomic # 7 Polarization: 1.30 SS G_CDS: 0.92 Total: 2.22 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -2.45 Total: -11.01 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -5.14 Total: -6.17 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -2.81 Total: 0.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -14.03 -10.08 -24.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567540_13652106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.736 kcal (2) G-P(sol) polarization free energy of solvation -14.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds