Wall clock time and date at job start Mon Mar 8 2021 10:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42910 * 1 3 3 Si 1.86306 * 109.46823 * 2 1 4 4 C 1.50693 * 109.46872 * 119.99922 * 2 1 3 5 5 C 1.33388 * 122.54245 * 75.00419 * 4 2 1 6 6 S 1.76204 * 125.19832 * 359.95392 * 5 4 2 7 7 O 1.42105 * 106.40059 * 293.53791 * 6 5 4 8 8 O 1.42091 * 106.40230 * 66.46113 * 6 5 4 9 9 N 1.65599 * 107.21566 * 180.02562 * 6 5 4 10 10 C 1.46501 * 120.00291 * 64.99583 * 9 6 5 11 11 C 1.53003 * 109.47265 * 164.99870 * 10 9 6 12 12 H 1.09004 * 112.84968 * 45.33610 * 11 10 9 13 13 C 1.53773 * 113.61678 * 176.53222 * 11 10 9 14 14 C 1.53777 * 87.08314 * 139.98146 * 13 11 10 15 15 H 1.09008 * 113.61320 * 89.20590 * 14 13 11 16 16 N 1.46500 * 113.61511 * 220.01552 * 14 13 11 17 17 C 1.35318 * 125.86426 * 85.00574 * 16 14 13 18 18 C 1.35354 * 106.17463 * 179.97438 * 17 16 14 19 19 N 1.33775 * 106.49378 * 359.97438 * 18 17 16 20 20 N 1.28633 * 108.88826 * 359.73629 * 19 18 17 21 21 C 1.53785 * 113.61654 * 274.14363 * 11 10 9 22 22 S 1.75879 * 109.59837 * 179.97438 * 5 4 2 23 23 C 1.75889 * 90.97049 * 359.97438 * 22 5 4 24 24 C 1.33389 * 109.59326 * 0.02562 * 23 22 5 25 25 H 0.96702 * 113.99871 * 300.00420 * 1 2 3 26 26 H 1.08996 * 109.46644 * 240.00285 * 2 1 3 27 27 H 1.48498 * 109.99580 * 178.68072 * 3 2 1 28 28 H 1.48493 * 110.00014 * 300.00059 * 3 2 1 29 29 H 0.97004 * 119.99633 * 244.99912 * 9 6 5 30 30 H 1.08990 * 109.47343 * 285.00124 * 10 9 6 31 31 H 1.09008 * 109.46817 * 45.00468 * 10 9 6 32 32 H 1.09003 * 113.61481 * 254.53225 * 13 11 10 33 33 H 1.09000 * 113.61371 * 25.34916 * 13 11 10 34 34 H 1.07995 * 126.90997 * 359.97438 * 17 16 14 35 35 H 1.07993 * 126.75040 * 180.02562 * 18 17 16 36 36 H 1.09003 * 113.60907 * 334.56076 * 21 11 10 37 37 H 1.08997 * 113.61629 * 105.46890 * 21 11 10 38 38 H 1.07995 * 125.20405 * 179.73500 * 23 22 5 39 39 H 1.07998 * 122.54399 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.8962 -2.0377 1.3572 6 16 1.2748 -3.1575 0.1469 7 8 -0.1223 -2.9146 0.0553 8 8 2.1532 -3.0725 -0.9668 9 7 1.4438 -4.6861 0.7609 10 6 0.6866 -5.0860 1.9497 11 6 0.7236 -6.6091 2.0896 12 1 1.7202 -7.0240 1.9383 13 6 0.0262 -7.1284 3.3579 14 6 -0.5257 -8.2724 2.4911 15 1 0.1281 -9.1437 2.4502 16 7 -1.9168 -8.6189 2.7930 17 6 -3.0135 -8.0124 2.2827 18 6 -4.0805 -8.6443 2.8250 19 7 -3.5908 -9.5943 3.6296 20 7 -2.3058 -9.5569 3.5839 21 6 -0.3717 -7.3285 1.2847 22 16 2.5643 -2.4993 2.9174 23 6 2.8634 -0.8138 3.3215 24 6 2.4651 -0.0349 2.3145 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5615 2.4679 -1.2084 29 1 2.0442 -5.3169 0.3335 30 1 1.1305 -4.6290 2.8339 31 1 -0.3474 -4.7553 1.8500 32 1 0.7183 -7.4614 4.1314 33 1 -0.7434 -6.4571 3.7389 34 1 -3.0333 -7.1897 1.5833 35 1 -5.1223 -8.4253 2.6433 36 1 -1.2513 -6.7127 1.0971 37 1 -0.0004 -7.8228 0.3870 38 1 3.2982 -0.4628 4.2456 39 1 2.5524 1.0412 2.3427 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17567540_13652106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:26:06 Heat of formation + Delta-G solvation = 64.610154 kcal Electronic energy + Delta-G solvation = -27285.659094 eV Core-core repulsion = 23259.396897 eV Total energy + Delta-G solvation = -4026.262197 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.065 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.24258 -40.46601 -40.04076 -38.41157 -37.17309 -37.02469 -36.27393 -33.96610 -31.99591 -31.43419 -28.75240 -28.07769 -26.94216 -25.16868 -24.32573 -23.60512 -22.38505 -21.69485 -20.69345 -19.94726 -19.64397 -18.96829 -18.53017 -17.89594 -17.41455 -17.24829 -16.78011 -16.56520 -16.29860 -15.92397 -15.86895 -15.74490 -15.49153 -15.14004 -14.91031 -14.27714 -13.98179 -13.88287 -13.71664 -13.65315 -13.54866 -13.36760 -13.26598 -13.10689 -12.74168 -12.71504 -12.58853 -12.50860 -12.31487 -11.96535 -11.79169 -11.75202 -11.56345 -10.96841 -10.68363 -10.61608 -10.39697 -10.35972 -9.59956 -5.10668 -0.83078 -0.66207 0.22146 0.63716 0.66279 1.13804 1.28747 1.45800 1.60203 1.61324 1.85082 1.92374 2.47667 3.03446 3.22073 3.31016 3.43173 3.44912 3.52346 3.61185 3.68777 3.91609 3.99721 4.13433 4.20290 4.22607 4.27161 4.27737 4.36526 4.47065 4.60343 4.62142 4.71544 4.75988 4.80975 4.89799 4.91303 4.96336 5.10369 5.21999 5.29591 5.72095 5.92202 6.65343 7.51772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.123 4.123 3 Si 0.818 3.182 4 C -0.005 4.005 5 C -0.799 4.799 6 S 2.723 3.277 7 O -0.959 6.959 8 O -0.993 6.993 9 N -1.105 6.105 10 C 0.116 3.884 11 C -0.096 4.096 12 H 0.135 0.865 13 C -0.129 4.129 14 C 0.100 3.900 15 H 0.144 0.856 16 N -0.274 5.274 17 C -0.039 4.039 18 C -0.067 4.067 19 N -0.319 5.319 20 N -0.127 5.127 21 C -0.139 4.139 22 S 0.231 5.769 23 C -0.153 4.153 24 C -0.170 4.170 25 H 0.400 0.600 26 H 0.095 0.905 27 H -0.275 1.275 28 H -0.292 1.292 29 H 0.433 0.567 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.225 0.775 35 H 0.211 0.789 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.213 0.787 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 5.352 5.089 8.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.233 4.233 3 Si 0.719 3.281 4 C -0.023 4.023 5 C -1.001 5.001 6 S 2.810 3.190 7 O -0.948 6.948 8 O -0.983 6.983 9 N -0.871 5.871 10 C -0.009 4.009 11 C -0.117 4.117 12 H 0.153 0.847 13 C -0.169 4.169 14 C 0.000 4.000 15 H 0.161 0.839 16 N -0.068 5.068 17 C -0.190 4.190 18 C -0.225 4.225 19 N -0.184 5.184 20 N -0.105 5.105 21 C -0.178 4.178 22 S 0.498 5.502 23 C -0.290 4.290 24 C -0.198 4.198 25 H 0.250 0.750 26 H 0.112 0.888 27 H -0.201 1.201 28 H -0.219 1.219 29 H 0.272 0.728 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.241 0.759 35 H 0.228 0.772 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.230 0.770 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.632 3.401 5.184 8.376 hybrid contribution -0.044 1.220 -1.459 1.902 sum 5.588 4.621 3.725 8.152 Atomic orbital electron populations 1.86641 1.15435 1.82377 1.50397 1.25740 0.86909 1.14709 0.95941 0.93650 0.77630 0.71877 0.84917 1.19247 0.94355 0.91586 0.97123 1.35527 1.27942 1.14586 1.22035 1.00857 0.73288 0.72521 0.72304 1.93608 1.31117 1.84754 1.85364 1.93570 1.68189 1.86647 1.49865 1.55250 1.59047 1.29614 1.43146 1.21643 0.96867 0.96200 0.86220 1.22535 1.00649 0.92841 0.95634 0.84724 1.23450 1.00643 0.95258 0.97539 1.23848 0.76265 0.99877 1.00058 0.83869 1.47833 1.09647 1.21187 1.28151 1.24173 0.85219 1.04407 1.05243 1.24208 1.02653 0.96386 0.99244 1.75081 1.00993 1.21585 1.20720 1.78243 1.07778 1.10570 1.13948 1.23723 1.00576 0.96660 0.96820 1.83851 1.55229 1.06933 1.04205 1.26674 1.01912 0.96084 1.04308 1.20447 1.03690 1.03112 0.92589 0.74991 0.88760 1.20094 1.21934 0.72848 0.89744 0.89541 0.87972 0.88738 0.75886 0.77198 0.87712 0.87870 0.76999 0.79744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.99 12.30 -148.10 -1.82 -3.81 16 2 C -0.12 -0.35 2.33 71.23 0.17 -0.19 16 3 Si 0.82 -2.24 30.25 68.60 2.07 -0.16 16 4 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 5 C -0.80 -0.80 6.46 66.72 0.43 -0.37 16 6 S 2.72 11.38 5.07 -56.49 -0.29 11.09 16 7 O -0.96 -9.31 16.90 -125.69 -2.12 -11.44 16 8 O -0.99 -11.37 17.50 -128.00 -2.24 -13.61 16 9 N -1.10 6.47 5.81 -187.48 -1.09 5.38 16 10 C 0.12 -1.11 5.79 86.38 0.50 -0.61 16 11 C -0.10 1.24 3.78 -10.27 -0.04 1.20 16 12 H 0.13 -2.24 8.14 -2.38 -0.02 -2.26 16 13 C -0.13 1.35 7.44 31.12 0.23 1.58 16 14 C 0.10 -0.71 4.96 45.57 0.23 -0.48 16 15 H 0.14 -1.22 8.14 -2.38 -0.02 -1.24 16 16 N -0.27 -0.31 3.53 -324.39 -1.15 -1.46 16 17 C -0.04 0.05 10.78 83.49 0.90 0.95 16 18 C -0.07 -0.25 12.06 83.73 1.01 0.76 16 19 N -0.32 -3.83 12.41 -58.26 -0.72 -4.55 16 20 N -0.13 -1.27 13.17 37.02 0.49 -0.78 16 21 C -0.14 1.53 6.99 31.18 0.22 1.75 16 22 S 0.23 -1.46 21.09 -56.49 -1.19 -2.66 16 23 C -0.15 1.32 11.23 66.72 0.75 2.07 16 24 C -0.17 1.04 8.74 21.22 0.19 1.22 16 25 H 0.40 -2.57 8.70 -74.06 -0.64 -3.21 16 26 H 0.09 0.73 7.24 -2.39 -0.02 0.71 16 27 H -0.27 -0.29 7.11 99.48 0.71 0.42 16 28 H -0.29 -1.35 7.11 99.48 0.71 -0.65 16 29 H 0.43 -4.36 8.65 -96.74 -0.84 -5.20 16 30 H 0.08 -1.01 6.25 -2.39 -0.01 -1.03 16 31 H 0.09 -0.72 7.48 -2.38 -0.02 -0.73 16 32 H 0.10 -1.19 8.14 -2.39 -0.02 -1.21 16 33 H 0.09 -0.86 8.10 -2.39 -0.02 -0.88 16 34 H 0.22 -2.13 6.74 -2.91 -0.02 -2.15 16 35 H 0.21 -0.54 8.06 -2.91 -0.02 -0.57 16 36 H 0.10 -1.16 6.11 -2.39 -0.01 -1.18 16 37 H 0.10 -1.27 8.14 -2.39 -0.02 -1.29 16 38 H 0.21 -3.31 8.06 -2.91 -0.02 -3.34 16 39 H 0.19 -2.30 5.73 -2.91 -0.02 -2.31 16 Total: 0.00 -36.45 351.61 -3.90 -40.35 By element: Atomic # 1 Polarization: -25.81 SS G_CDS: -0.31 Total: -26.12 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 4.47 Total: 7.78 kcal Atomic # 7 Polarization: 1.05 SS G_CDS: -2.47 Total: -1.42 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -6.19 Total: -28.86 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.07 Total: -0.16 kcal Atomic # 16 Polarization: 9.91 SS G_CDS: -1.48 Total: 8.44 kcal Total: -36.45 -3.90 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17567540_13652106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.957 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds